RNA–Protein interactions for RNA: ENST00000484954.1

VPS50-216, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 4

Gene VPS50, Length 594 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-216ENST00000484954 MAPK3P27361 379 aaPredicted RBP1.34□□□□□ -2.19
VPS50-216ENST00000484954 QARSP47897 775 aaKnown RBP1.34□□□□□ -2.19
VPS50-216ENST00000484954 KLRC3Q07444 240 aa1.34□□□□□ -2.19
VPS50-216ENST00000484954 PLD1Q13393 1074 aa1.34□□□□□ -2.19
VPS50-216ENST00000484954 USH1GQ495M9 461 aa1.34□□□□□ -2.19
VPS50-216ENST00000484954 C10orf120Q5SQS8 335 aa1.34□□□□□ -2.19
VPS50-216ENST00000484954 C1orf220Q5T0J3 134 aa1.34□□□□□ -2.19
VPS50-216ENST00000484954 BEND3Q5T5X7 828 aa1.34□□□□□ -2.19
VPS50-216ENST00000484954 HES5Q5TA89 166 aa1.34□□□□□ -2.19
VPS50-216ENST00000484954 CNIH2Q6PI25 160 aa1.34□□□□□ -2.19
VPS50-216ENST00000484954 DUX4L9Q6RFH8 374 aaPredicted RBP1.34□□□□□ -2.19
VPS50-216ENST00000484954 OR10G4Q8NGN3 311 aa1.34□□□□□ -2.19
VPS50-216ENST00000484954 RNF139Q8WU17 664 aa1.34□□□□□ -2.19
VPS50-216ENST00000484954 C7orf34Q96L11 122 aa1.34□□□□□ -2.19
VPS50-216ENST00000484954 GIN1Q9NXP7 522 aa1.34□□□□□ -2.19
VPS50-216ENST00000484954 ZNF586Q9NXT0 402 aa1.34□□□□□ -2.19
VPS50-216ENST00000484954 ACTR3BQ9P1U1 418 aa1.34□□□□□ -2.19
VPS50-216ENST00000484954 PCSK1NQ9UHG2 260 aa1.34□□□□□ -2.19
VPS50-216ENST00000484954 ODF2LQ9ULJ1 636 aa1.34□□□□□ -2.19
VPS50-216ENST00000484954 NID2Q14112 1375 aa1.34□□□□□ -2.2
VPS50-216ENST00000484954 PCNX2A6NKB5 2137 aa1.33□□□□□ -2.2
VPS50-216ENST00000484954 IGHV5-10-1A0A0J9YXX1 117 aa1.33□□□□□ -2.2
VPS50-216ENST00000484954 A0A1B0GVI7 797 aa1.33□□□□□ -2.2
VPS50-216ENST00000484954 RGSL1A5PLK6 1076 aa1.33□□□□□ -2.2
VPS50-216ENST00000484954 BCAS1O75363 584 aaPredicted RBP1.33□□□□□ -2.2
VPS50-216ENST00000484954 CDRT1O95170 752 aa1.33□□□□□ -2.2
VPS50-216ENST00000484954 AP2A1O95782 977 aa1.33□□□□□ -2.2
VPS50-216ENST00000484954 AK1P00568 194 aa1.33□□□□□ -2.2
VPS50-216ENST00000484954 SMIM10L1P0DMW3 83 aa1.33□□□□□ -2.2
VPS50-216ENST00000484954 IGHV1-8P0DP01 117 aa1.33□□□□□ -2.2
VPS50-216ENST00000484954 RDXP35241 583 aaKnown RBP1.33□□□□□ -2.2
VPS50-216ENST00000484954 KIR3DL2P43630 455 aa1.33□□□□□ -2.2
VPS50-216ENST00000484954 RPS21P63220 83 aaKnown RBP1.33□□□□□ -2.2
VPS50-216ENST00000484954 IRX3P78415 501 aaPredicted RBP1.33□□□□□ -2.2
VPS50-216ENST00000484954 LOXL1Q08397 574 aaPredicted RBP1.33□□□□□ -2.2
VPS50-216ENST00000484954 CDC20Q12834 499 aa1.33□□□□□ -2.2
VPS50-216ENST00000484954 SCGB2A2Q13296 93 aa1.33□□□□□ -2.2
VPS50-216ENST00000484954 SLC39A6Q13433 755 aa1.33□□□□□ -2.2
VPS50-216ENST00000484954 AQP6Q13520 282 aa1.33□□□□□ -2.2
VPS50-216ENST00000484954 ZDHHC21Q8IVQ6 265 aa1.33□□□□□ -2.2
VPS50-216ENST00000484954 GEMIN6Q8WXD5 167 aaKnown RBP1.33□□□□□ -2.2
VPS50-216ENST00000484954 SMIM10Q96HG1 83 aa1.33□□□□□ -2.2
VPS50-216ENST00000484954 TSSK3Q96PN8 268 aa1.33□□□□□ -2.2
VPS50-216ENST00000484954 RNF5Q99942 180 aa1.33□□□□□ -2.2
VPS50-216ENST00000484954 RAB34Q9BZG1 259 aa1.33□□□□□ -2.2
VPS50-216ENST00000484954 GBA3Q9H227 469 aa1.33□□□□□ -2.2
VPS50-216ENST00000484954 TIMM10BQ9Y5J6 103 aa1.33□□□□□ -2.2
VPS50-216ENST00000484954 TMEM14AQ9Y6G1 99 aa1.33□□□□□ -2.2
VPS50-216ENST00000484954 S4R3C0 116 aa1.33□□□□□ -2.2
VPS50-216ENST00000484954 U3KQV3 271 aa1.33□□□□□ -2.2
VPS50-216ENST00000484954 SCN1AP35498 2009 aa1.33□□□□□ -2.2
VPS50-216ENST00000484954 ANKRD12Q6UB98 2062 aa1.32□□□□□ -2.2
VPS50-216ENST00000484954 TMEM223A0PJW6 202 aa1.32□□□□□ -2.2
VPS50-216ENST00000484954 KMOO15229 486 aa1.32□□□□□ -2.2
VPS50-216ENST00000484954 FOLR1P15328 257 aa1.32□□□□□ -2.2
VPS50-216ENST00000484954 LAP3P28838 519 aa1.32□□□□□ -2.2
VPS50-216ENST00000484954 HTD2P86397 168 aa1.32□□□□□ -2.2
VPS50-216ENST00000484954 ZNF816Q0VGE8 651 aaPredicted RBP1.32□□□□□ -2.2
VPS50-216ENST00000484954 SELPLGQ14242 412 aa1.32□□□□□ -2.2
VPS50-216ENST00000484954 DMRTC1Q5HYR2 192 aa1.32□□□□□ -2.2
VPS50-216ENST00000484954 STRADAQ7RTN6 431 aa1.32□□□□□ -2.2
VPS50-216ENST00000484954 ZNF573Q86YE8 665 aa1.32□□□□□ -2.2
VPS50-216ENST00000484954 FAM133AQ8N9E0 248 aa1.32□□□□□ -2.2
VPS50-216ENST00000484954 FNDC5Q8NAU1 212 aa1.32□□□□□ -2.2
VPS50-216ENST00000484954 NECAP1Q8NC96 275 aa1.32□□□□□ -2.2
VPS50-216ENST00000484954 ZCCHC13Q8WW36 166 aaKnown RBP1.32□□□□□ -2.2
VPS50-216ENST00000484954 CTNNBL1Q8WYA6 563 aaPredicted RBP1.32□□□□□ -2.2
VPS50-216ENST00000484954 SGK3Q96BR1 496 aa1.32□□□□□ -2.2
VPS50-216ENST00000484954 EFHD2Q96C19 240 aaPredicted RBP1.32□□□□□ -2.2
VPS50-216ENST00000484954 L3HYPDHQ96EM0 354 aa1.32□□□□□ -2.2
VPS50-216ENST00000484954 CDX2Q99626 313 aaPredicted RBP1.32□□□□□ -2.2
VPS50-216ENST00000484954 OMDQ99983 421 aa1.32□□□□□ -2.2
VPS50-216ENST00000484954 TUBGCP2Q9BSJ2 902 aa1.32□□□□□ -2.2
VPS50-216ENST00000484954 TAS2R3Q9NYW6 316 aa1.32□□□□□ -2.2
VPS50-216ENST00000484954 LAMP5Q9UJQ1 280 aa1.32□□□□□ -2.2
VPS50-216ENST00000484954 PACSIN2Q9UNF0 486 aaPredicted RBP1.32□□□□□ -2.2
VPS50-216ENST00000484954 PSG8Q9UQ74 426 aa1.32□□□□□ -2.2
VPS50-216ENST00000484954 POLDIP2Q9Y2S7 368 aa1.32□□□□□ -2.2
VPS50-216ENST00000484954 OR10H1Q9Y4A9 318 aa1.32□□□□□ -2.2
VPS50-216ENST00000484954 MYO16Q9Y6X6 1858 aa1.32□□□□□ -2.2
VPS50-216ENST00000484954 FBN3Q75N90 2809 aa1.31□□□□□ -2.2
VPS50-216ENST00000484954 SEC16AO15027 2179 aa1.31□□□□□ -2.2
VPS50-216ENST00000484954 NLRC5Q86WI3 1866 aa1.31□□□□□ -2.2
VPS50-216ENST00000484954 ZNF407Q9C0G0 2248 aa1.31□□□□□ -2.2
VPS50-216ENST00000484954 VGLL3A8MV65 326 aa1.31□□□□□ -2.2
VPS50-216ENST00000484954 A8MXQ7 604 aa1.31□□□□□ -2.2
VPS50-216ENST00000484954 RAD51BO15315 384 aa1.31□□□□□ -2.2
VPS50-216ENST00000484954 DIRAS1O95057 198 aa1.31□□□□□ -2.2
VPS50-216ENST00000484954 DIRAS3O95661 229 aa1.31□□□□□ -2.2
VPS50-216ENST00000484954 GAPDHP04406 335 aaKnown RBP1.31□□□□□ -2.2
VPS50-216ENST00000484954 NPBWR2P48146 333 aa1.31□□□□□ -2.2
VPS50-216ENST00000484954 CYB561P49447 251 aa1.31□□□□□ -2.2
VPS50-216ENST00000484954 PITPNAQ00169 270 aa1.31□□□□□ -2.2
VPS50-216ENST00000484954 ERCC8Q13216 396 aa1.31□□□□□ -2.2
VPS50-216ENST00000484954 OR5I1Q13606 314 aa1.31□□□□□ -2.2
VPS50-216ENST00000484954 POU2AF1Q16633 256 aa1.31□□□□□ -2.2
VPS50-216ENST00000484954 CCDC92Q53HC0 331 aaPredicted RBP1.31□□□□□ -2.2
VPS50-216ENST00000484954 SPIN3Q5JUX0 258 aa1.31□□□□□ -2.2
VPS50-216ENST00000484954 KDM7AQ6ZMT4 941 aa1.31□□□□□ -2.2
VPS50-216ENST00000484954 ZNF493Q6ZR52 646 aa1.31□□□□□ -2.2
Retrieved 100 of 20,778 RNA–protein pairs in 53.5 ms