RNA–Protein interactions for RNA: ENST00000476903.1

CCDC88A-213, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 3

Gene CCDC88A, Length 419 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-213ENST00000476903 TRIM64A6NGJ6 449 aa5.95□□□□□ -1.46
CCDC88A-213ENST00000476903 TRIM64BA6NI03 449 aa5.95□□□□□ -1.46
CCDC88A-213ENST00000476903 OR6C65A6NJZ3 312 aa5.95□□□□□ -1.46
CCDC88A-213ENST00000476903 M0R1B8 84 aa5.95□□□□□ -1.46
CCDC88A-213ENST00000476903 PDLIM1O00151 329 aa5.95□□□□□ -1.46
CCDC88A-213ENST00000476903 EDF1O60869 148 aaKnown RBP5.95□□□□□ -1.46
CCDC88A-213ENST00000476903 SERPINB7O75635 380 aa5.95□□□□□ -1.46
CCDC88A-213ENST00000476903 KRT33AO76009 404 aa5.95□□□□□ -1.46
CCDC88A-213ENST00000476903 SOD3P08294 240 aa5.95□□□□□ -1.46
CCDC88A-213ENST00000476903 PNMTP11086 282 aa5.95□□□□□ -1.46
CCDC88A-213ENST00000476903 CD40P25942 277 aa5.95□□□□□ -1.46
CCDC88A-213ENST00000476903 RPS5P46782 204 aaKnown RBP5.95□□□□□ -1.46
CCDC88A-213ENST00000476903 ZNF83P51522 516 aa5.95□□□□□ -1.46
CCDC88A-213ENST00000476903 P2RY4P51582 365 aa5.95□□□□□ -1.46
CCDC88A-213ENST00000476903 FOXG1P55316 489 aaPredicted RBP5.95□□□□□ -1.46
CCDC88A-213ENST00000476903 PRPS1P60891 318 aa5.95□□□□□ -1.46
CCDC88A-213ENST00000476903 LTBQ06643 244 aa5.95□□□□□ -1.46
CCDC88A-213ENST00000476903 GABRA6Q16445 453 aa5.95□□□□□ -1.46
CCDC88A-213ENST00000476903 PGGHGQ32M88 737 aa5.95□□□□□ -1.46
CCDC88A-213ENST00000476903 ALG10BQ5I7T1 473 aa5.95□□□□□ -1.46
CCDC88A-213ENST00000476903 TSPO2Q5TGU0 170 aa5.95□□□□□ -1.46
CCDC88A-213ENST00000476903 C9orf135Q5VTT2 229 aa5.95□□□□□ -1.46
CCDC88A-213ENST00000476903 SLC22A25Q6T423 547 aa5.95□□□□□ -1.46
CCDC88A-213ENST00000476903 KLHL24Q6TFL4 600 aa5.95□□□□□ -1.46
CCDC88A-213ENST00000476903 C5orf46Q6UWT4 87 aa5.95□□□□□ -1.46
CCDC88A-213ENST00000476903 DLEU7Q6UYE1 221 aa5.95□□□□□ -1.46
CCDC88A-213ENST00000476903 CREB3L2Q70SY1 520 aa5.95□□□□□ -1.46
CCDC88A-213ENST00000476903 DHDDSQ86SQ9 333 aa5.95□□□□□ -1.46
CCDC88A-213ENST00000476903 CIARTQ8N365 385 aaPredicted RBP5.95□□□□□ -1.46
CCDC88A-213ENST00000476903 LSMEM1Q8N8F7 131 aa5.95□□□□□ -1.46
CCDC88A-213ENST00000476903 ZIC4Q8N9L1 334 aa5.95□□□□□ -1.46
CCDC88A-213ENST00000476903 HIPK4Q8NE63 616 aa5.95□□□□□ -1.46
CCDC88A-213ENST00000476903 TSPEARQ8WU66 669 aa5.95□□□□□ -1.46
CCDC88A-213ENST00000476903 DNAJA4Q8WW22 397 aaPredicted RBP5.95□□□□□ -1.46
CCDC88A-213ENST00000476903 NEUROG1Q92886 237 aa5.95□□□□□ -1.46
CCDC88A-213ENST00000476903 SLC38A4Q969I6 547 aa5.95□□□□□ -1.46
CCDC88A-213ENST00000476903 SLC25A36Q96CQ1 311 aa5.95□□□□□ -1.46
CCDC88A-213ENST00000476903 THOC1Q96FV9 657 aaKnown RBP5.95□□□□□ -1.46
CCDC88A-213ENST00000476903 ZNF385AQ96PM9 386 aaKnown RBP5.95□□□□□ -1.46
CCDC88A-213ENST00000476903 CPPED1Q9BRF8 314 aaPredicted RBP5.95□□□□□ -1.46
CCDC88A-213ENST00000476903 PTDSS2Q9BVG9 487 aa5.95□□□□□ -1.46
CCDC88A-213ENST00000476903 IKZF5Q9H5V7 419 aa5.95□□□□□ -1.46
CCDC88A-213ENST00000476903 ZNF385DQ9H6B1 395 aa5.95□□□□□ -1.46
CCDC88A-213ENST00000476903 EVA1AQ9H8M9 152 aa5.95□□□□□ -1.46
CCDC88A-213ENST00000476903 SLC17A5Q9NRA2 495 aa5.95□□□□□ -1.46
CCDC88A-213ENST00000476903 CISD1Q9NZ45 108 aaKnown RBP5.95□□□□□ -1.46
CCDC88A-213ENST00000476903 SELENONQ9NZV5 590 aa5.95□□□□□ -1.46
CCDC88A-213ENST00000476903 TESQ9UGI8 421 aaKnown RBP5.95□□□□□ -1.46
CCDC88A-213ENST00000476903 SLC13A4Q9UKG4 626 aa5.95□□□□□ -1.46
CCDC88A-213ENST00000476903 POU2F3Q9UKI9 436 aa5.95□□□□□ -1.46
CCDC88A-213ENST00000476903 NDUFAF1Q9Y375 327 aa5.95□□□□□ -1.46
CCDC88A-213ENST00000476903 NF1P21359 2839 aa5.95□□□□□ -1.46
CCDC88A-213ENST00000476903 A0A0G2JND7 137 aa5.94□□□□□ -1.46
CCDC88A-213ENST00000476903 A0A1B0GWA3 101 aa5.94□□□□□ -1.46
CCDC88A-213ENST00000476903 FTCDNL1E5RQL4 147 aa5.94□□□□□ -1.46
CCDC88A-213ENST00000476903 ZNF587BE7ETH6 402 aa5.94□□□□□ -1.46
CCDC88A-213ENST00000476903 AIM2O14862 343 aa5.94□□□□□ -1.46
CCDC88A-213ENST00000476903 ANGPT2O15123 496 aa5.94□□□□□ -1.46
CCDC88A-213ENST00000476903 OR2T1O43869 369 aa5.94□□□□□ -1.46
CCDC88A-213ENST00000476903 TPST1O60507 370 aa5.94□□□□□ -1.46
CCDC88A-213ENST00000476903 LY6G6DO95868 133 aa5.94□□□□□ -1.46
CCDC88A-213ENST00000476903 KNG1P01042 644 aa5.94□□□□□ -1.46
CCDC88A-213ENST00000476903 ZNF43P17038 809 aa5.94□□□□□ -1.46
CCDC88A-213ENST00000476903 CDH2P19022 906 aaPredicted RBP5.94□□□□□ -1.46
CCDC88A-213ENST00000476903 PAX7P23759 505 aa5.94□□□□□ -1.46
CCDC88A-213ENST00000476903 HTR2AP28223 471 aa5.94□□□□□ -1.46
CCDC88A-213ENST00000476903 AQP1P29972 269 aa5.94□□□□□ -1.46
CCDC88A-213ENST00000476903 CDKN1AP38936 164 aa5.94□□□□□ -1.46
CCDC88A-213ENST00000476903 RGS8P57771 180 aaPredicted RBP5.94□□□□□ -1.46
CCDC88A-213ENST00000476903 EGR4Q05215 589 aa5.94□□□□□ -1.46
CCDC88A-213ENST00000476903 SPOCK1Q08629 439 aa5.94□□□□□ -1.46
CCDC88A-213ENST00000476903 RBBP4Q09028 425 aa5.94□□□□□ -1.46
CCDC88A-213ENST00000476903 NFYCQ13952 458 aa5.94□□□□□ -1.46
CCDC88A-213ENST00000476903 VEZF1Q14119 521 aa5.94□□□□□ -1.46
CCDC88A-213ENST00000476903 ADRM1Q16186 407 aa5.94□□□□□ -1.46
CCDC88A-213ENST00000476903 NRF1Q16656 503 aa5.94□□□□□ -1.46
CCDC88A-213ENST00000476903 CYP51A1Q16850 503 aa5.94□□□□□ -1.46
CCDC88A-213ENST00000476903 CLEC12BQ2HXU8 276 aa5.94□□□□□ -1.46
CCDC88A-213ENST00000476903 RUNDC3AQ59EK9 446 aa5.94□□□□□ -1.46
CCDC88A-213ENST00000476903 FAM69AQ5T7M9 428 aa5.94□□□□□ -1.46
CCDC88A-213ENST00000476903 AGAP6Q5VW22 663 aa5.94□□□□□ -1.46
CCDC88A-213ENST00000476903 METTL21CQ5VZV1 264 aa5.94□□□□□ -1.46
CCDC88A-213ENST00000476903 FAM91A1Q658Y4 838 aa5.94□□□□□ -1.46
CCDC88A-213ENST00000476903 NIPAL3Q6P499 406 aa5.94□□□□□ -1.46
CCDC88A-213ENST00000476903 ULK3Q6PHR2 472 aa5.94□□□□□ -1.46
CCDC88A-213ENST00000476903 VHLLQ6RSH7 139 aa5.94□□□□□ -1.46
CCDC88A-213ENST00000476903 Q71RC1 249 aaPredicted RBP5.94□□□□□ -1.46
CCDC88A-213ENST00000476903 NET1Q7Z628 596 aaPredicted RBP5.94□□□□□ -1.46
CCDC88A-213ENST00000476903 DTX2Q86UW9 622 aa5.94□□□□□ -1.46
CCDC88A-213ENST00000476903 COMTD1Q86VU5 262 aa5.94□□□□□ -1.46
CCDC88A-213ENST00000476903 RANBP3LQ86VV4 465 aaPredicted RBP5.94□□□□□ -1.46
CCDC88A-213ENST00000476903 ARMC8Q8IUR7 673 aa5.94□□□□□ -1.46
CCDC88A-213ENST00000476903 SLC30A8Q8IWU4 369 aa5.94□□□□□ -1.46
CCDC88A-213ENST00000476903 FBXL14Q8N1E6 418 aa5.94□□□□□ -1.46
CCDC88A-213ENST00000476903 C10orf111Q8N326 155 aa5.94□□□□□ -1.46
CCDC88A-213ENST00000476903 DPP10Q8N608 796 aa5.94□□□□□ -1.46
CCDC88A-213ENST00000476903 WDR31Q8NA23 367 aa5.94□□□□□ -1.46
CCDC88A-213ENST00000476903 C11orf65Q8NCR3 313 aa5.94□□□□□ -1.46
CCDC88A-213ENST00000476903 KTI12Q96EK9 354 aaPredicted RBP5.94□□□□□ -1.46
CCDC88A-213ENST00000476903 SLC47A1Q96FL8 570 aa5.94□□□□□ -1.46
Retrieved 100 of 20,778 RNA–protein pairs in 35.7 ms