RNA–Protein interactions for RNA: ENST00000473099.1

VPS13D-205, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 2

Gene VPS13D, Length 461 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-205ENST00000473099 FOXK1P85037 733 aa11.5□□□□□ -0.57
VPS13D-205ENST00000473099 POU4F3Q15319 338 aa11.5□□□□□ -0.57
VPS13D-205ENST00000473099 MESTQ5EB52 335 aa11.5□□□□□ -0.57
VPS13D-205ENST00000473099 WIPI1Q5MNZ9 446 aaPredicted RBP11.5□□□□□ -0.57
VPS13D-205ENST00000473099 TMEM225Q6GV28 225 aa11.5□□□□□ -0.57
VPS13D-205ENST00000473099 DNM1P34Q6PK57 102 aa11.5□□□□□ -0.57
VPS13D-205ENST00000473099 IGFL3Q6UXB1 125 aa11.5□□□□□ -0.57
VPS13D-205ENST00000473099 B3GNT6Q6ZMB0 384 aa11.5□□□□□ -0.57
VPS13D-205ENST00000473099 SLC35D2Q76EJ3 337 aa11.5□□□□□ -0.57
VPS13D-205ENST00000473099 FAM109AQ8N4B1 249 aa11.5□□□□□ -0.57
VPS13D-205ENST00000473099 ACBD7Q8N6N7 88 aa11.5□□□□□ -0.57
VPS13D-205ENST00000473099 TMEM99Q8N816 258 aa11.5□□□□□ -0.57
VPS13D-205ENST00000473099 FNDC8Q8TC99 324 aa11.5□□□□□ -0.57
VPS13D-205ENST00000473099 ASB10Q8WXI3 467 aa11.5□□□□□ -0.57
VPS13D-205ENST00000473099 KISS1RQ969F8 398 aaPredicted RBP11.5□□□□□ -0.57
VPS13D-205ENST00000473099 BCL7BQ9BQE9 202 aa11.5□□□□□ -0.57
VPS13D-205ENST00000473099 HES7Q9BYE0 225 aa11.5□□□□□ -0.57
VPS13D-205ENST00000473099 RBM38Q9H0Z9 239 aaKnown RBP11.5□□□□□ -0.57
VPS13D-205ENST00000473099 PAQR5Q9NXK6 330 aaPredicted RBP11.5□□□□□ -0.57
VPS13D-205ENST00000473099 VSX1Q9NZR4 365 aaPredicted RBP11.5□□□□□ -0.57
VPS13D-205ENST00000473099 SEC14L4Q9UDX3 406 aa11.5□□□□□ -0.57
VPS13D-205ENST00000473099 GTF3C1Q12789 2109 aa11.5□□□□□ -0.57
VPS13D-205ENST00000473099 PRSS37A4D1T9 235 aa11.49□□□□□ -0.57
VPS13D-205ENST00000473099 OR6C68A6NDL8 312 aa11.49□□□□□ -0.57
VPS13D-205ENST00000473099 CENPBD1B2RD01 187 aa11.49□□□□□ -0.57
VPS13D-205ENST00000473099 C1QTNF9BB2RNN3 333 aa11.49□□□□□ -0.57
VPS13D-205ENST00000473099 ARHGEF9O43307 516 aa11.49□□□□□ -0.57
VPS13D-205ENST00000473099 AKAP8O43823 692 aaKnown RBP11.49□□□□□ -0.57
VPS13D-205ENST00000473099 SERPINI2O75830 405 aa11.49□□□□□ -0.57
VPS13D-205ENST00000473099 INMTO95050 263 aa11.49□□□□□ -0.57
VPS13D-205ENST00000473099 ACTL6AO96019 429 aa11.49□□□□□ -0.57
VPS13D-205ENST00000473099 SBK2P0C263 348 aa11.49□□□□□ -0.57
VPS13D-205ENST00000473099 C1QTNF9P0C862 333 aa11.49□□□□□ -0.57
VPS13D-205ENST00000473099 PSMB9P28065 219 aa11.49□□□□□ -0.57
VPS13D-205ENST00000473099 CRABP1P29762 137 aa11.49□□□□□ -0.57
VPS13D-205ENST00000473099 AGFG1P52594 562 aaKnown RBP11.49□□□□□ -0.57
VPS13D-205ENST00000473099 TMBIM6P55061 237 aa11.49□□□□□ -0.57
VPS13D-205ENST00000473099 UCNP55089 124 aa11.49□□□□□ -0.57
VPS13D-205ENST00000473099 H3F3AP84243 136 aa11.49□□□□□ -0.57
VPS13D-205ENST00000473099 POU3F1Q03052 451 aaPredicted RBP11.49□□□□□ -0.57
VPS13D-205ENST00000473099 SLC10A1Q14973 349 aa11.49□□□□□ -0.57
VPS13D-205ENST00000473099 BCL2A1Q16548 175 aa11.49□□□□□ -0.57
VPS13D-205ENST00000473099 EGFL6Q8IUX8 553 aa11.49□□□□□ -0.57
VPS13D-205ENST00000473099 ZADH2Q8N4Q0 377 aa11.49□□□□□ -0.57
VPS13D-205ENST00000473099 TMEM251Q8N6I4 163 aa11.49□□□□□ -0.57
VPS13D-205ENST00000473099 NANOGP1Q8N7R0 232 aa11.49□□□□□ -0.57
VPS13D-205ENST00000473099 OR51G2Q8NGK0 314 aa11.49□□□□□ -0.57
VPS13D-205ENST00000473099 OR9Q1Q8NGQ5 310 aa11.49□□□□□ -0.57
VPS13D-205ENST00000473099 OR2V1Q8NHB1 315 aa11.49□□□□□ -0.57
VPS13D-205ENST00000473099 SMPDL3BQ92485 455 aa11.49□□□□□ -0.57
VPS13D-205ENST00000473099 TMIGD2Q96BF3 282 aa11.49□□□□□ -0.57
VPS13D-205ENST00000473099 DNAJA3Q96EY1 480 aa11.49□□□□□ -0.57
VPS13D-205ENST00000473099 ADAD1Q96M93 576 aaKnown RBP11.49□□□□□ -0.57
VPS13D-205ENST00000473099 COG8Q96MW5 612 aa11.49□□□□□ -0.57
VPS13D-205ENST00000473099 CNN2Q99439 309 aaKnown RBP11.49□□□□□ -0.57
VPS13D-205ENST00000473099 MNTQ99583 582 aa11.49□□□□□ -0.57
VPS13D-205ENST00000473099 ALG12Q9BV10 488 aa11.49□□□□□ -0.57
VPS13D-205ENST00000473099 SF3B5Q9BWJ5 86 aaKnown RBP11.49□□□□□ -0.57
VPS13D-205ENST00000473099 HCAR1Q9BXC0 346 aa11.49□□□□□ -0.57
VPS13D-205ENST00000473099 MFRPQ9BY79 579 aa11.49□□□□□ -0.57
VPS13D-205ENST00000473099 CCDC86Q9H6F5 360 aaKnown RBP11.49□□□□□ -0.57
VPS13D-205ENST00000473099 ISYNA1Q9NPH2 558 aa11.49□□□□□ -0.57
VPS13D-205ENST00000473099 RPRD1BQ9NQG5 326 aaKnown RBP11.49□□□□□ -0.57
VPS13D-205ENST00000473099 RSL24D1Q9UHA3 163 aaKnown RBP11.49□□□□□ -0.57
VPS13D-205ENST00000473099 IGF2RP11717 2491 aa11.49□□□□□ -0.57
VPS13D-205ENST00000473099 ARHGAP21Q5T5U3 1957 aa11.48□□□□□ -0.57
VPS13D-205ENST00000473099 PHF3Q92576 2039 aaKnown RBP11.48□□□□□ -0.57
VPS13D-205ENST00000473099 CACNA1CQ13936 2221 aa11.48□□□□□ -0.57
VPS13D-205ENST00000473099 A0A0J9YW62 118 aa11.48□□□□□ -0.57
VPS13D-205ENST00000473099 J3QRE1 110 aa11.48□□□□□ -0.57
VPS13D-205ENST00000473099 PLGP00747 810 aaPredicted RBP11.48□□□□□ -0.57
VPS13D-205ENST00000473099 PTHP01270 115 aa11.48□□□□□ -0.57
VPS13D-205ENST00000473099 LCKP06239 509 aa11.48□□□□□ -0.57
VPS13D-205ENST00000473099 OR2T7P0C7T2 308 aa11.48□□□□□ -0.57
VPS13D-205ENST00000473099 ZNF43P17038 809 aa11.48□□□□□ -0.57
VPS13D-205ENST00000473099 MAGEA5P43359 124 aa11.48□□□□□ -0.57
VPS13D-205ENST00000473099 P2RY4P51582 365 aa11.48□□□□□ -0.57
VPS13D-205ENST00000473099 GP2P55259 537 aaKnown RBP11.48□□□□□ -0.57
VPS13D-205ENST00000473099 WNT4P56705 351 aa11.48□□□□□ -0.57
VPS13D-205ENST00000473099 CARD18P57730 90 aa11.48□□□□□ -0.57
VPS13D-205ENST00000473099 RPS3AP61247 264 aaKnown RBP11.48□□□□□ -0.57
VPS13D-205ENST00000473099 PPIAP62937 165 aaKnown RBP11.48□□□□□ -0.57
VPS13D-205ENST00000473099 HSF2Q03933 536 aa11.48□□□□□ -0.57
VPS13D-205ENST00000473099 SPHARQ15513 63 aa11.48□□□□□ -0.57
VPS13D-205ENST00000473099 MED22Q15528 200 aa11.48□□□□□ -0.57
VPS13D-205ENST00000473099 TIGD6Q17RP2 521 aa11.48□□□□□ -0.57
VPS13D-205ENST00000473099 EEF1A1P5Q5VTE0 462 aa11.48□□□□□ -0.57
VPS13D-205ENST00000473099 HBMQ6B0K9 141 aa11.48□□□□□ -0.57
VPS13D-205ENST00000473099 TMPRSS11AQ6ZMR5 421 aa11.48□□□□□ -0.57
VPS13D-205ENST00000473099 PNPLA5Q7Z6Z6 429 aaPredicted RBP11.48□□□□□ -0.57
VPS13D-205ENST00000473099 GGNQ86UU5 652 aa11.48□□□□□ -0.57
VPS13D-205ENST00000473099 ZBTB46Q86UZ6 589 aa11.48□□□□□ -0.57
VPS13D-205ENST00000473099 LSRQ86X29 649 aaPredicted RBP11.48□□□□□ -0.57
VPS13D-205ENST00000473099 CLVS1Q8IUQ0 354 aaPredicted RBP11.48□□□□□ -0.57
VPS13D-205ENST00000473099 SPACA3Q8IXA5 215 aa11.48□□□□□ -0.57
VPS13D-205ENST00000473099 KLHL36Q8N4N3 616 aa11.48□□□□□ -0.57
VPS13D-205ENST00000473099 MEIOBQ8N635 442 aa11.48□□□□□ -0.57
VPS13D-205ENST00000473099 EXD3Q8N9H8 876 aa11.48□□□□□ -0.57
VPS13D-205ENST00000473099 OR4F15Q8NGB8 312 aa11.48□□□□□ -0.57
VPS13D-205ENST00000473099 OR2T27Q8NH04 317 aa11.48□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 61.9 ms