RNA–Protein interactions for RNA: ENST00000469550.6

HDAC3-205, Transcript of histone deacetylase 3, humanhuman

TSL 1 (best)

Gene HDAC3, Length 1,952 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3-205ENST00000469550 ACOT7O00154 380 aa8.75□□□□□ -1.01
HDAC3-205ENST00000469550 LGALS8O00214 317 aa8.75□□□□□ -1.01
HDAC3-205ENST00000469550 PPM1DO15297 605 aa8.75□□□□□ -1.01
HDAC3-205ENST00000469550 PTP4A3O75365 173 aa8.75□□□□□ -1.01
HDAC3-205ENST00000469550 KHDRBS3O75525 346 aaKnown RBP8.75□□□□□ -1.01
HDAC3-205ENST00000469550 LYPD3O95274 346 aa8.75□□□□□ -1.01
HDAC3-205ENST00000469550 H2AFB1P0C5Y9 115 aa8.75□□□□□ -1.01
HDAC3-205ENST00000469550 CALCBP10092 127 aa8.75□□□□□ -1.01
HDAC3-205ENST00000469550 ZNF3P17036 446 aa8.75□□□□□ -1.01
HDAC3-205ENST00000469550 SRMP19623 302 aa8.75□□□□□ -1.01
HDAC3-205ENST00000469550 RABIFP47224 123 aa8.75□□□□□ -1.01
HDAC3-205ENST00000469550 LSSP48449 732 aa8.75□□□□□ -1.01
HDAC3-205ENST00000469550 UCNP55089 124 aa8.75□□□□□ -1.01
HDAC3-205ENST00000469550 CLDN2P57739 230 aa8.75□□□□□ -1.01
HDAC3-205ENST00000469550 MAT1AQ00266 395 aaKnown RBP8.75□□□□□ -1.01
HDAC3-205ENST00000469550 PRDX1Q06830 199 aaKnown RBP8.75□□□□□ -1.01
HDAC3-205ENST00000469550 AGERQ15109 404 aa8.75□□□□□ -1.01
HDAC3-205ENST00000469550 ARHGAP11BQ3KRB8 267 aa8.75□□□□□ -1.01
HDAC3-205ENST00000469550 LINC00303Q3SY05 128 aa8.75□□□□□ -1.01
HDAC3-205ENST00000469550 ABHD17CQ6PCB6 329 aa8.75□□□□□ -1.01
HDAC3-205ENST00000469550 ZNF836Q6ZNA1 936 aa8.75□□□□□ -1.01
HDAC3-205ENST00000469550 AMZ2Q86W34 360 aa8.75□□□□□ -1.01
HDAC3-205ENST00000469550 PARGQ86W56 976 aa8.75□□□□□ -1.01
HDAC3-205ENST00000469550 IZUMO1Q8IYV9 350 aa8.75□□□□□ -1.01
HDAC3-205ENST00000469550 POMGNT2Q8NAT1 580 aa8.75□□□□□ -1.01
HDAC3-205ENST00000469550 ZNF248Q8NDW4 579 aa8.75□□□□□ -1.01
HDAC3-205ENST00000469550 MS4A6EQ96DS6 147 aa8.75□□□□□ -1.01
HDAC3-205ENST00000469550 MRPS24Q96EL2 167 aaKnown RBP8.75□□□□□ -1.01
HDAC3-205ENST00000469550 PELI1Q96FA3 418 aa8.75□□□□□ -1.01
HDAC3-205ENST00000469550 SLC38A3Q99624 504 aa8.75□□□□□ -1.01
HDAC3-205ENST00000469550 NPAS1Q99742 590 aa8.75□□□□□ -1.01
HDAC3-205ENST00000469550 TAS2R10Q9NYW0 307 aa8.75□□□□□ -1.01
HDAC3-205ENST00000469550 MRPL15Q9P015 296 aaKnown RBP8.75□□□□□ -1.01
HDAC3-205ENST00000469550 ATPIF1Q9UII2 106 aa8.75□□□□□ -1.01
HDAC3-205ENST00000469550 SSUH2Q9Y2M2 353 aa8.75□□□□□ -1.01
HDAC3-205ENST00000469550 ATG4BQ9Y4P1 393 aa8.75□□□□□ -1.01
HDAC3-205ENST00000469550 A0A0G2JN53 185 aa8.75□□□□□ -1.01
HDAC3-205ENST00000469550 GLOD5A6NK44 160 aa8.75□□□□□ -1.01
HDAC3-205ENST00000469550 ARPC5O15511 151 aa8.75□□□□□ -1.01
HDAC3-205ENST00000469550 SPINT1O43278 529 aa8.75□□□□□ -1.01
HDAC3-205ENST00000469550 PRKRAO75569 313 aaKnown RBP8.75□□□□□ -1.01
HDAC3-205ENST00000469550 AIFM1O95831 613 aa8.75□□□□□ -1.01
HDAC3-205ENST00000469550 MRPL3P09001 348 aaKnown RBP8.75□□□□□ -1.01
HDAC3-205ENST00000469550 RPA2P15927 270 aa8.75□□□□□ -1.01
HDAC3-205ENST00000469550 NDUFS1P28331 727 aa8.75□□□□□ -1.01
HDAC3-205ENST00000469550 NOS3P29474 1203 aa8.75□□□□□ -1.01
HDAC3-205ENST00000469550 MC3RP41968 323 aa8.75□□□□□ -1.01
HDAC3-205ENST00000469550 SLC16A1P53985 500 aa8.75□□□□□ -1.01
HDAC3-205ENST00000469550 MAZP56270 477 aaKnown RBP8.75□□□□□ -1.01
HDAC3-205ENST00000469550 GGTLC2Q14390 218 aa8.75□□□□□ -1.01
HDAC3-205ENST00000469550 PABPC1L2AQ5JQF8 200 aa8.75□□□□□ -1.01
HDAC3-205ENST00000469550 ZNF660Q6AZW8 331 aaPredicted RBP8.75□□□□□ -1.01
HDAC3-205ENST00000469550 MTFR2Q6P444 385 aa8.75□□□□□ -1.01
HDAC3-205ENST00000469550 THSD4Q6ZMP0 1018 aa8.75□□□□□ -1.01
HDAC3-205ENST00000469550 SSX6Q7RTT6 188 aa8.75□□□□□ -1.01
HDAC3-205ENST00000469550 SLC36A1Q7Z2H8 476 aa8.75□□□□□ -1.01
HDAC3-205ENST00000469550 SYT9Q86SS6 491 aa8.75□□□□□ -1.01
HDAC3-205ENST00000469550 RAB42Q8N4Z0 105 aa8.75□□□□□ -1.01
HDAC3-205ENST00000469550 ACOT4Q8N9L9 421 aa8.75□□□□□ -1.01
HDAC3-205ENST00000469550 CAMKVQ8NCB2 501 aa8.75□□□□□ -1.01
HDAC3-205ENST00000469550 RPS4Y2Q8TD47 263 aa8.75□□□□□ -1.01
HDAC3-205ENST00000469550 HAVCR1Q96D42 359 aa8.75□□□□□ -1.01
HDAC3-205ENST00000469550 ARL6Q9H0F7 186 aa8.75□□□□□ -1.01
HDAC3-205ENST00000469550 EVA1AQ9H8M9 152 aa8.75□□□□□ -1.01
HDAC3-205ENST00000469550 SLC6A20Q9NP91 592 aa8.75□□□□□ -1.01
HDAC3-205ENST00000469550 EXOSC3Q9NQT5 275 aaKnown RBP8.75□□□□□ -1.01
HDAC3-205ENST00000469550 ANKRD10Q9NXR5 420 aa8.75□□□□□ -1.01
HDAC3-205ENST00000469550 GPR160Q9UJ42 338 aa8.75□□□□□ -1.01
HDAC3-205ENST00000469550 SERTAD3Q9UJW9 196 aa8.75□□□□□ -1.01
HDAC3-205ENST00000469550 FBXL2Q9UKC9 423 aa8.75□□□□□ -1.01
HDAC3-205ENST00000469550 ICAM5Q9UMF0 924 aa8.75□□□□□ -1.01
HDAC3-205ENST00000469550 COPS3Q9UNS2 423 aa8.75□□□□□ -1.01
HDAC3-205ENST00000469550 FOXJ3Q9UPW0 622 aa8.75□□□□□ -1.01
HDAC3-205ENST00000469550 WDR45Q9Y484 360 aa8.75□□□□□ -1.01
HDAC3-205ENST00000469550 TCRBV16S1A1N1A0A5B0 115 aa8.74□□□□□ -1.01
HDAC3-205ENST00000469550 POM121BA6NF01 834 aa8.74□□□□□ -1.01
HDAC3-205ENST00000469550 H3BUI4 141 aa8.74□□□□□ -1.01
HDAC3-205ENST00000469550 IFNGP01579 166 aa8.74□□□□□ -1.01
HDAC3-205ENST00000469550 ANXA7P20073 488 aaKnown RBP8.74□□□□□ -1.01
HDAC3-205ENST00000469550 PSMB5P28074 263 aa8.74□□□□□ -1.01
HDAC3-205ENST00000469550 FAUP35544 74 aaKnown RBP8.74□□□□□ -1.01
HDAC3-205ENST00000469550 HOXA1P49639 335 aaPredicted RBP8.74□□□□□ -1.01
HDAC3-205ENST00000469550 P2RX1P51575 399 aa8.74□□□□□ -1.01
HDAC3-205ENST00000469550 CRMP1Q14194 572 aa8.74□□□□□ -1.01
HDAC3-205ENST00000469550 ZNF750Q32MQ0 723 aa8.74□□□□□ -1.01
HDAC3-205ENST00000469550 CLVS2Q5SYC1 327 aa8.74□□□□□ -1.01
HDAC3-205ENST00000469550 METRNLQ641Q3 311 aa8.74□□□□□ -1.01
HDAC3-205ENST00000469550 MFSD12Q6NUT3 480 aa8.74□□□□□ -1.01
HDAC3-205ENST00000469550 ARHGAP11AQ6P4F7 1023 aa8.74□□□□□ -1.01
HDAC3-205ENST00000469550 WDR88Q6ZMY6 472 aa8.74□□□□□ -1.01
HDAC3-205ENST00000469550 OR2L5Q8NG80 312 aa8.74□□□□□ -1.01
HDAC3-205ENST00000469550 ZDHHC1Q8WTX9 485 aa8.74□□□□□ -1.01
HDAC3-205ENST00000469550 SMAP2Q8WU79 429 aaPredicted RBP8.74□□□□□ -1.01
HDAC3-205ENST00000469550 BPIFA2Q96DR5 249 aa8.74□□□□□ -1.01
HDAC3-205ENST00000469550 MRPL48Q96GC5 212 aaKnown RBP8.74□□□□□ -1.01
HDAC3-205ENST00000469550 DERL3Q96Q80 235 aa8.74□□□□□ -1.01
HDAC3-205ENST00000469550 OR14A2Q96R54 314 aa8.74□□□□□ -1.01
HDAC3-205ENST00000469550 GFI1Q99684 422 aa8.74□□□□□ -1.01
HDAC3-205ENST00000469550 KLHL31Q9H511 634 aa8.74□□□□□ -1.01
HDAC3-205ENST00000469550 ASCL3Q9NQ33 180 aa8.74□□□□□ -1.01
Retrieved 100 of 20,778 RNA–protein pairs in 27.2 ms