RNA–Protein interactions for RNA: ENST00000466342.1

SQSTM1-206, Transcript of sequestosome 1, humanhuman

TSL 2

Gene SQSTM1, Length 808 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-206ENST00000466342 PIWIL3Q7Z3Z3 882 aaKnown RBP10.48□□□□□ -0.73
SQSTM1-206ENST00000466342 NUFIP2Q7Z417 695 aaKnown RBP10.48□□□□□ -0.73
SQSTM1-206ENST00000466342 GPAT4Q86UL3 456 aa10.48□□□□□ -0.73
SQSTM1-206ENST00000466342 STEAP2Q8NFT2 490 aa10.48□□□□□ -0.73
SQSTM1-206ENST00000466342 PFN4Q8NHR9 129 aa10.48□□□□□ -0.73
SQSTM1-206ENST00000466342 ACOT11Q8WXI4 607 aaPredicted RBP10.48□□□□□ -0.73
SQSTM1-206ENST00000466342 ZNF347Q96SE7 839 aa10.48□□□□□ -0.73
SQSTM1-206ENST00000466342 USB1Q9BQ65 265 aaKnown RBP10.48□□□□□ -0.73
SQSTM1-206ENST00000466342 SHARPINQ9H0F6 387 aa10.48□□□□□ -0.73
SQSTM1-206ENST00000466342 SLCO5A1Q9H2Y9 848 aa10.48□□□□□ -0.73
SQSTM1-206ENST00000466342 C12orf49Q9H741 205 aa10.48□□□□□ -0.73
SQSTM1-206ENST00000466342 NANSQ9NR45 359 aa10.48□□□□□ -0.73
SQSTM1-206ENST00000466342 C20orf141Q9NUB4 165 aa10.48□□□□□ -0.73
SQSTM1-206ENST00000466342 MRPL39Q9NYK5 338 aaKnown RBP10.48□□□□□ -0.73
SQSTM1-206ENST00000466342 SEC14L4Q9UDX3 406 aa10.48□□□□□ -0.73
SQSTM1-206ENST00000466342 ZNF229Q9UJW7 825 aa10.48□□□□□ -0.73
SQSTM1-206ENST00000466342 LAMP3Q9UQV4 416 aa10.48□□□□□ -0.73
SQSTM1-206ENST00000466342 RASD1Q9Y272 281 aa10.48□□□□□ -0.73
SQSTM1-206ENST00000466342 NOSIPQ9Y314 301 aaKnown RBP10.48□□□□□ -0.73
SQSTM1-206ENST00000466342 A0A087WUU8 490 aa10.47□□□□□ -0.73
SQSTM1-206ENST00000466342 HTR3EA5X5Y0 456 aa10.47□□□□□ -0.73
SQSTM1-206ENST00000466342 HS3ST1O14792 307 aa10.47□□□□□ -0.73
SQSTM1-206ENST00000466342 KLF4O43474 513 aa10.47□□□□□ -0.73
SQSTM1-206ENST00000466342 PIP5K1CO60331 668 aa10.47□□□□□ -0.73
SQSTM1-206ENST00000466342 THBDP07204 575 aa10.47□□□□□ -0.73
SQSTM1-206ENST00000466342 ASAH2BP0C7U1 165 aa10.47□□□□□ -0.73
SQSTM1-206ENST00000466342 UMPSP11172 480 aa10.47□□□□□ -0.73
SQSTM1-206ENST00000466342 NQO1P15559 274 aaKnown RBP10.47□□□□□ -0.73
SQSTM1-206ENST00000466342 CFPP27918 469 aa10.47□□□□□ -0.73
SQSTM1-206ENST00000466342 SMIM11AP58511 58 aa10.47□□□□□ -0.73
SQSTM1-206ENST00000466342 SPIBQ01892 262 aa10.47□□□□□ -0.73
SQSTM1-206ENST00000466342 CHRNB3Q05901 458 aa10.47□□□□□ -0.73
SQSTM1-206ENST00000466342 PMS2P3Q13401 168 aa10.47□□□□□ -0.73
SQSTM1-206ENST00000466342 FGD3Q5JSP0 725 aa10.47□□□□□ -0.73
SQSTM1-206ENST00000466342 LIPNQ5VXI9 398 aa10.47□□□□□ -0.73
SQSTM1-206ENST00000466342 TFAP2EQ6VUC0 442 aa10.47□□□□□ -0.73
SQSTM1-206ENST00000466342 ZNF730Q6ZMV8 503 aa10.47□□□□□ -0.73
SQSTM1-206ENST00000466342 SLC46A3Q7Z3Q1 461 aa10.47□□□□□ -0.73
SQSTM1-206ENST00000466342 GALNT5Q7Z7M9 940 aa10.47□□□□□ -0.73
SQSTM1-206ENST00000466342 SPATA24Q86W54 205 aa10.47□□□□□ -0.73
SQSTM1-206ENST00000466342 ADGRG5Q8IZF4 528 aa10.47□□□□□ -0.73
SQSTM1-206ENST00000466342 RNF113BQ8IZP6 322 aaKnown RBP10.47□□□□□ -0.73
SQSTM1-206ENST00000466342 GABRG1Q8N1C3 465 aa10.47□□□□□ -0.73
SQSTM1-206ENST00000466342 OR9K2Q8NGE7 335 aa10.47□□□□□ -0.73
SQSTM1-206ENST00000466342 OR5J2Q8NH18 312 aa10.47□□□□□ -0.73
SQSTM1-206ENST00000466342 SLC7A13Q8TCU3 470 aa10.47□□□□□ -0.73
SQSTM1-206ENST00000466342 TMEM45BQ96B21 275 aa10.47□□□□□ -0.73
SQSTM1-206ENST00000466342 ZNF775Q96BV0 537 aaPredicted RBP10.47□□□□□ -0.73
SQSTM1-206ENST00000466342 SGTBQ96EQ0 304 aa10.47□□□□□ -0.73
SQSTM1-206ENST00000466342 OXGR1Q96P68 337 aa10.47□□□□□ -0.73
SQSTM1-206ENST00000466342 B3GAT1Q9P2W7 334 aa10.47□□□□□ -0.73
SQSTM1-206ENST00000466342 FLVCR1Q9Y5Y0 555 aa10.47□□□□□ -0.73
SQSTM1-206ENST00000466342 MALRD1Q5VYJ5 2156 aa10.47□□□□□ -0.73
SQSTM1-206ENST00000466342 TRBV4-1A0A0J9YWV2 114 aa10.46□□□□□ -0.73
SQSTM1-206ENST00000466342 LOC102725191A0A1B0GVB3 256 aa10.46□□□□□ -0.73
SQSTM1-206ENST00000466342 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP10.46□□□□□ -0.73
SQSTM1-206ENST00000466342 TCRBV3S1A0A5B6 114 aa10.46□□□□□ -0.73
SQSTM1-206ENST00000466342 DHRS12A0PJE2 317 aa10.46□□□□□ -0.73
SQSTM1-206ENST00000466342 MS4A18H0YCH9 400 aa10.46□□□□□ -0.73
SQSTM1-206ENST00000466342 OR7A10O76100 309 aa10.46□□□□□ -0.73
SQSTM1-206ENST00000466342 GADD45GO95257 159 aa10.46□□□□□ -0.73
SQSTM1-206ENST00000466342 PLAUP00749 431 aa10.46□□□□□ -0.73
SQSTM1-206ENST00000466342 RAP2AP10114 183 aa10.46□□□□□ -0.73
SQSTM1-206ENST00000466342 IFI30P13284 250 aa10.46□□□□□ -0.73
SQSTM1-206ENST00000466342 HOXB6P17509 224 aaKnown RBP10.46□□□□□ -0.73
SQSTM1-206ENST00000466342 OR3A2P47893 321 aa10.46□□□□□ -0.73
SQSTM1-206ENST00000466342 LSM11P83369 360 aaKnown RBP eCLIP10.46□□□□□ -0.73
SQSTM1-206ENST00000466342 PRKCDQ05655 676 aa10.46□□□□□ -0.73
SQSTM1-206ENST00000466342 PUDPQ08623 228 aa10.46□□□□□ -0.73
SQSTM1-206ENST00000466342 P2RY6Q15077 328 aa10.46□□□□□ -0.73
SQSTM1-206ENST00000466342 MS4A18Q3C1V0 323 aa10.46□□□□□ -0.73
SQSTM1-206ENST00000466342 SFRP5Q5T4F7 317 aa10.46□□□□□ -0.73
SQSTM1-206ENST00000466342 MBOAT2Q6ZWT7 520 aa10.46□□□□□ -0.73
SQSTM1-206ENST00000466342 CREB3L2Q70SY1 520 aa10.46□□□□□ -0.73
SQSTM1-206ENST00000466342 RRM2BQ7LG56 351 aa10.46□□□□□ -0.73
SQSTM1-206ENST00000466342 ZC3HAV1Q7Z2W4 902 aaKnown RBP10.46□□□□□ -0.73
SQSTM1-206ENST00000466342 NRMQ8IXM6 262 aa10.46□□□□□ -0.73
SQSTM1-206ENST00000466342 KDM8Q8N371 416 aa10.46□□□□□ -0.73
SQSTM1-206ENST00000466342 LRRC17Q8N6Y2 441 aa10.46□□□□□ -0.73
SQSTM1-206ENST00000466342 ZIC4Q8N9L1 334 aa10.46□□□□□ -0.73
SQSTM1-206ENST00000466342 CANT1Q8WVQ1 401 aa10.46□□□□□ -0.73
SQSTM1-206ENST00000466342 LIPHQ8WWY8 451 aa10.46□□□□□ -0.73
SQSTM1-206ENST00000466342 BPIFA2Q96DR5 249 aa10.46□□□□□ -0.73
SQSTM1-206ENST00000466342 ZNF385AQ96PM9 386 aaKnown RBP10.46□□□□□ -0.73
SQSTM1-206ENST00000466342 FUZQ9BT04 418 aa10.46□□□□□ -0.73
SQSTM1-206ENST00000466342 ACTR6Q9GZN1 396 aa10.46□□□□□ -0.73
SQSTM1-206ENST00000466342 PLPP3O14495 311 aa10.45□□□□□ -0.74
SQSTM1-206ENST00000466342 MRPL33O75394 65 aaKnown RBP10.45□□□□□ -0.74
SQSTM1-206ENST00000466342 OR6A2O95222 327 aa10.45□□□□□ -0.74
SQSTM1-206ENST00000466342 HPRP00739 348 aa10.45□□□□□ -0.74
SQSTM1-206ENST00000466342 HIST1H2ABP04908 130 aa10.45□□□□□ -0.74
SQSTM1-206ENST00000466342 ADORA3P0DMS8 318 aa10.45□□□□□ -0.74
SQSTM1-206ENST00000466342 ZNF43P17038 809 aa10.45□□□□□ -0.74
SQSTM1-206ENST00000466342 SRD5A1P18405 259 aa10.45□□□□□ -0.74
SQSTM1-206ENST00000466342 FUT1P19526 365 aa10.45□□□□□ -0.74
SQSTM1-206ENST00000466342 RRM2P31350 389 aa10.45□□□□□ -0.74
SQSTM1-206ENST00000466342 NTF4P34130 210 aa10.45□□□□□ -0.74
SQSTM1-206ENST00000466342 ITGADQ13349 1161 aa10.45□□□□□ -0.74
SQSTM1-206ENST00000466342 TMEM249Q2WGJ8 235 aa10.45□□□□□ -0.74
SQSTM1-206ENST00000466342 TBPL2Q6SJ96 375 aa10.45□□□□□ -0.74
Retrieved 100 of 20,778 RNA–protein pairs in 43.4 ms