RNA–Protein interactions for RNA: ENST00000466159.6

SYNE1-217, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best) BASIC

Gene SYNE1, Length 2,610 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-217ENST00000466159 GHITMQ9H3K2 345 aa8.11□□□□□ -1.11
SYNE1-217ENST00000466159 SLA2Q9H6Q3 261 aa8.11□□□□□ -1.11
SYNE1-217ENST00000466159 NIPAL2Q9H841 368 aa8.11□□□□□ -1.11
SYNE1-217ENST00000466159 FKRPQ9H9S5 495 aa8.11□□□□□ -1.11
SYNE1-217ENST00000466159 TAS2R5Q9NYW4 299 aa8.11□□□□□ -1.11
SYNE1-217ENST00000466159 LAMP5Q9UJQ1 280 aa8.11□□□□□ -1.11
SYNE1-217ENST00000466159 MKL2Q9ULH7 1088 aa8.11□□□□□ -1.11
SYNE1-217ENST00000466159 V9GY05 133 aa8.11□□□□□ -1.11
SYNE1-217ENST00000466159 BGLAPP02818 100 aa8.1□□□□□ -1.11
SYNE1-217ENST00000466159 ABCD3P28288 659 aa8.1□□□□□ -1.11
SYNE1-217ENST00000466159 GDNFP39905 211 aa8.1□□□□□ -1.11
SYNE1-217ENST00000466159 SLC6A8P48029 635 aa8.1□□□□□ -1.11
SYNE1-217ENST00000466159 RGS19P49795 217 aa8.1□□□□□ -1.11
SYNE1-217ENST00000466159 PLCXD2Q0VAA5 305 aa8.1□□□□□ -1.11
SYNE1-217ENST00000466159 SNTB2Q13425 540 aaKnown RBP8.1□□□□□ -1.11
SYNE1-217ENST00000466159 TNK1Q13470 666 aa8.1□□□□□ -1.11
SYNE1-217ENST00000466159 SMAD4Q13485 552 aaKnown RBP8.1□□□□□ -1.11
SYNE1-217ENST00000466159 KLF9Q13886 244 aaPredicted RBP8.1□□□□□ -1.11
SYNE1-217ENST00000466159 CHRDL2Q6WN34 429 aa8.1□□□□□ -1.11
SYNE1-217ENST00000466159 STAC2Q6ZMT1 411 aa8.1□□□□□ -1.11
SYNE1-217ENST00000466159 LANCL3Q6ZV70 420 aa8.1□□□□□ -1.11
SYNE1-217ENST00000466159 LINGO2Q7L985 606 aa8.1□□□□□ -1.11
SYNE1-217ENST00000466159 KCTD20Q7Z5Y7 419 aa8.1□□□□□ -1.11
SYNE1-217ENST00000466159 DNAAF1Q8NEP3 725 aa8.1□□□□□ -1.11
SYNE1-217ENST00000466159 OR11H7Q8NGC8 314 aa8.1□□□□□ -1.11
SYNE1-217ENST00000466159 OR10AC1Q8NH08 325 aa8.1□□□□□ -1.11
SYNE1-217ENST00000466159 THEM6Q8WUY1 208 aa8.1□□□□□ -1.11
SYNE1-217ENST00000466159 SMIM4Q8WVI0 70 aa8.1□□□□□ -1.11
SYNE1-217ENST00000466159 OIT3Q8WWZ8 545 aa8.1□□□□□ -1.11
SYNE1-217ENST00000466159 ADAMTS14Q8WXS8 1223 aa8.1□□□□□ -1.11
SYNE1-217ENST00000466159 OMA1Q96E52 524 aa8.1□□□□□ -1.11
SYNE1-217ENST00000466159 AMELYQ99218 206 aa8.1□□□□□ -1.11
SYNE1-217ENST00000466159 DPYSL5Q9BPU6 564 aa8.1□□□□□ -1.11
SYNE1-217ENST00000466159 TBL1XR1Q9BZK7 514 aa8.1□□□□□ -1.11
SYNE1-217ENST00000466159 VN1R1Q9GZP7 353 aa8.1□□□□□ -1.11
SYNE1-217ENST00000466159 WWTR1Q9GZV5 400 aa8.1□□□□□ -1.11
SYNE1-217ENST00000466159 MED28Q9H204 178 aa8.1□□□□□ -1.11
SYNE1-217ENST00000466159 NUBP2Q9Y5Y2 271 aa8.1□□□□□ -1.11
SYNE1-217ENST00000466159 C7orf66A4D0T2 115 aa8.1□□□□□ -1.11
SYNE1-217ENST00000466159 PDCD5O14737 125 aa8.1□□□□□ -1.11
SYNE1-217ENST00000466159 FABP7O15540 132 aa8.1□□□□□ -1.11
SYNE1-217ENST00000466159 GSTZ1O43708 216 aaPredicted RBP8.1□□□□□ -1.11
SYNE1-217ENST00000466159 ITGA10O75578 1167 aa8.1□□□□□ -1.11
SYNE1-217ENST00000466159 RENP00797 406 aa8.1□□□□□ -1.11
SYNE1-217ENST00000466159 SYPP08247 313 aa8.1□□□□□ -1.11
SYNE1-217ENST00000466159 PTHLHP12272 177 aa8.1□□□□□ -1.11
SYNE1-217ENST00000466159 ADRA2CP18825 462 aa8.1□□□□□ -1.11
SYNE1-217ENST00000466159 ALOX5APP20292 161 aa8.1□□□□□ -1.11
SYNE1-217ENST00000466159 BCKDHBP21953 392 aa8.1□□□□□ -1.11
SYNE1-217ENST00000466159 RPS15P62841 145 aaKnown RBP8.1□□□□□ -1.11
SYNE1-217ENST00000466159 BTBD16Q32M84 506 aa8.1□□□□□ -1.11
SYNE1-217ENST00000466159 Q499Y3 187 aa8.1□□□□□ -1.11
SYNE1-217ENST00000466159 EMC4Q5J8M3 183 aa8.1□□□□□ -1.11
SYNE1-217ENST00000466159 ARHGAP40Q5TG30 622 aa8.1□□□□□ -1.11
SYNE1-217ENST00000466159 EEF1A1P5Q5VTE0 462 aa8.1□□□□□ -1.11
SYNE1-217ENST00000466159 LAMTOR1Q6IAA8 161 aa8.1□□□□□ -1.11
SYNE1-217ENST00000466159 LRRC69Q6ZNQ3 347 aa8.1□□□□□ -1.11
SYNE1-217ENST00000466159 PLXDC1Q8IUK5 500 aa8.1□□□□□ -1.11
SYNE1-217ENST00000466159 SLC25A45Q8N413 288 aa8.1□□□□□ -1.11
SYNE1-217ENST00000466159 D2HGDHQ8N465 521 aa8.1□□□□□ -1.11
SYNE1-217ENST00000466159 BEST4Q8NFU0 473 aa8.1□□□□□ -1.11
SYNE1-217ENST00000466159 OR51A4Q8NGJ6 313 aa8.1□□□□□ -1.11
SYNE1-217ENST00000466159 DAZLQ92904 295 aaKnown RBP8.1□□□□□ -1.11
SYNE1-217ENST00000466159 PHF21AQ96BD5 680 aa8.1□□□□□ -1.11
SYNE1-217ENST00000466159 MESP1Q9BRJ9 268 aa8.1□□□□□ -1.11
SYNE1-217ENST00000466159 ULBP3Q9BZM4 244 aa8.1□□□□□ -1.11
SYNE1-217ENST00000466159 CHRDQ9H2X0 955 aa8.1□□□□□ -1.11
SYNE1-217ENST00000466159 C12orf10Q9HB07 376 aa8.1□□□□□ -1.11
SYNE1-217ENST00000466159 TCF7L1Q9HCS4 588 aa8.1□□□□□ -1.11
SYNE1-217ENST00000466159 CFAP54Q96N23 3096 aa8.1□□□□□ -1.11
SYNE1-217ENST00000466159 TRAV36DV7A0A075B6V5 113 aa8.09□□□□□ -1.11
SYNE1-217ENST00000466159 IGHV3-20A0A0C4DH32 117 aa8.09□□□□□ -1.11
SYNE1-217ENST00000466159 ALG1L2C9J202 215 aa8.09□□□□□ -1.11
SYNE1-217ENST00000466159 CTDSPLO15194 276 aa8.09□□□□□ -1.11
SYNE1-217ENST00000466159 DCAF7P61962 342 aa8.09□□□□□ -1.11
SYNE1-217ENST00000466159 NUP210LQ5VU65 1888 aa8.09□□□□□ -1.11
SYNE1-217ENST00000466159 BAIAP2L2Q6UXY1 529 aa8.09□□□□□ -1.11
SYNE1-217ENST00000466159 C16orf47Q6ZP98 133 aaPredicted RBP8.09□□□□□ -1.11
SYNE1-217ENST00000466159 ZSCAN2Q7Z7L9 614 aaPredicted RBP8.09□□□□□ -1.11
SYNE1-217ENST00000466159 OR1N1Q8NGS0 311 aa8.09□□□□□ -1.11
SYNE1-217ENST00000466159 OR2G2Q8NGZ5 317 aa8.09□□□□□ -1.11
SYNE1-217ENST00000466159 OR52I2Q8NH67 350 aa8.09□□□□□ -1.11
SYNE1-217ENST00000466159 SYNPRQ8TBG9 265 aa8.09□□□□□ -1.11
SYNE1-217ENST00000466159 DEDD2Q8WXF8 326 aa8.09□□□□□ -1.11
SYNE1-217ENST00000466159 MS4A3Q96HJ5 214 aa8.09□□□□□ -1.11
SYNE1-217ENST00000466159 PTDSS2Q9BVG9 487 aa8.09□□□□□ -1.11
SYNE1-217ENST00000466159 GTPBP2Q9BX10 602 aaKnown RBP8.09□□□□□ -1.11
SYNE1-217ENST00000466159 BEX1Q9HBH7 125 aa8.09□□□□□ -1.11
SYNE1-217ENST00000466159 COPS7AQ9UBW8 275 aa8.09□□□□□ -1.11
SYNE1-217ENST00000466159 CTSFQ9UBX1 484 aa8.09□□□□□ -1.11
SYNE1-217ENST00000466159 OR5V1Q9UGF6 321 aa8.09□□□□□ -1.11
SYNE1-217ENST00000466159 KCNG2Q9UJ96 466 aa8.09□□□□□ -1.11
SYNE1-217ENST00000466159 TRAV8-7A0A075B6U6 113 aa8.09□□□□□ -1.11
SYNE1-217ENST00000466159 OR4C45A6NMZ5 311 aa8.09□□□□□ -1.11
SYNE1-217ENST00000466159 NUDT21O43809 227 aaKnown RBP8.09□□□□□ -1.11
SYNE1-217ENST00000466159 DUX1O43812 170 aa8.09□□□□□ -1.11
SYNE1-217ENST00000466159 GMDSO60547 372 aa8.09□□□□□ -1.11
SYNE1-217ENST00000466159 ZNF780AO75290 641 aaPredicted RBP8.09□□□□□ -1.11
SYNE1-217ENST00000466159 SLC25A12O75746 678 aa8.09□□□□□ -1.11
SYNE1-217ENST00000466159 MAS1P04201 325 aa8.09□□□□□ -1.11
Retrieved 100 of 20,778 RNA–protein pairs in 38.8 ms