RNA–Protein interactions for RNA: ENST00000454354.1

USP40-210, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2

Gene USP40, Length 348 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-210ENST00000454354 BMP4P12644 408 aa10.46□□□□□ -0.73
USP40-210ENST00000454354 AHCYP23526 432 aa10.46□□□□□ -0.73
USP40-210ENST00000454354 ARR3P36575 388 aa10.46□□□□□ -0.73
USP40-210ENST00000454354 MDH1P40925 334 aaKnown RBP10.46□□□□□ -0.73
USP40-210ENST00000454354 RBM34P42696 430 aaKnown RBP10.46□□□□□ -0.73
USP40-210ENST00000454354 DSCR9P59020 149 aa10.46□□□□□ -0.73
USP40-210ENST00000454354 RAB35Q15286 201 aa10.46□□□□□ -0.73
USP40-210ENST00000454354 MST1LQ2TV78 715 aa10.46□□□□□ -0.73
USP40-210ENST00000454354 CARD17Q5XLA6 110 aa10.46□□□□□ -0.73
USP40-210ENST00000454354 SLC46A3Q7Z3Q1 461 aa10.46□□□□□ -0.73
USP40-210ENST00000454354 ARPINQ7Z6K5 226 aa10.46□□□□□ -0.73
USP40-210ENST00000454354 NUP37Q8NFH4 326 aa10.46□□□□□ -0.73
USP40-210ENST00000454354 OR2T12Q8NG77 320 aa10.46□□□□□ -0.73
USP40-210ENST00000454354 OR10H5Q8NGA6 315 aa10.46□□□□□ -0.73
USP40-210ENST00000454354 OR4F15Q8NGB8 312 aa10.46□□□□□ -0.73
USP40-210ENST00000454354 OR6X1Q8NH79 312 aa10.46□□□□□ -0.73
USP40-210ENST00000454354 RCN3Q96D15 328 aa10.46□□□□□ -0.73
USP40-210ENST00000454354 ULBP2Q9BZM5 246 aa10.46□□□□□ -0.73
USP40-210ENST00000454354 MEPEQ9NQ76 525 aaPredicted RBP10.46□□□□□ -0.73
USP40-210ENST00000454354 CA10Q9NS85 328 aa10.46□□□□□ -0.73
USP40-210ENST00000454354 B3GNT2Q9NY97 397 aa10.46□□□□□ -0.73
USP40-210ENST00000454354 TAS2R5Q9NYW4 299 aa10.46□□□□□ -0.73
USP40-210ENST00000454354 AP3M1Q9Y2T2 418 aa10.46□□□□□ -0.73
USP40-210ENST00000454354 SH3GLB1Q9Y371 365 aa10.46□□□□□ -0.73
USP40-210ENST00000454354 PMF1-BGLAPU3KQ54 211 aa10.46□□□□□ -0.73
USP40-210ENST00000454354 RTTNQ86VV8 2226 aa10.45□□□□□ -0.74
USP40-210ENST00000454354 IGHV2OR16-5A0A0B4J2B6 119 aa10.45□□□□□ -0.74
USP40-210ENST00000454354 ZNF726A6NNF4 738 aa10.45□□□□□ -0.74
USP40-210ENST00000454354 C11orf98E9PRG8 122 aa10.45□□□□□ -0.74
USP40-210ENST00000454354 KPNA4O00629 521 aaPredicted RBP10.45□□□□□ -0.74
USP40-210ENST00000454354 SEC14L2O76054 403 aa10.45□□□□□ -0.74
USP40-210ENST00000454354 OR6A2O95222 327 aa10.45□□□□□ -0.74
USP40-210ENST00000454354 IFNA14P01570 189 aa10.45□□□□□ -0.74
USP40-210ENST00000454354 MT-ND1P03886 318 aa10.45□□□□□ -0.74
USP40-210ENST00000454354 THRBP10828 461 aa10.45□□□□□ -0.74
USP40-210ENST00000454354 IFNGR1P15260 489 aa10.45□□□□□ -0.74
USP40-210ENST00000454354 TNFRSF1BP20333 461 aa10.45□□□□□ -0.74
USP40-210ENST00000454354 KDELR2P33947 212 aa10.45□□□□□ -0.74
USP40-210ENST00000454354 CSNK1A1P48729 337 aa10.45□□□□□ -0.74
USP40-210ENST00000454354 EFNA4P52798 201 aa10.45□□□□□ -0.74
USP40-210ENST00000454354 BIDP55957 195 aa10.45□□□□□ -0.74
USP40-210ENST00000454354 CAMK2DQ13557 499 aa10.45□□□□□ -0.74
USP40-210ENST00000454354 EFNB3Q15768 340 aa10.45□□□□□ -0.74
USP40-210ENST00000454354 ADIPOQQ15848 244 aa10.45□□□□□ -0.74
USP40-210ENST00000454354 CYBRD1Q53TN4 286 aa10.45□□□□□ -0.74
USP40-210ENST00000454354 CLEC2AQ6UVW9 174 aa10.45□□□□□ -0.74
USP40-210ENST00000454354 SLC35D2Q76EJ3 337 aa10.45□□□□□ -0.74
USP40-210ENST00000454354 MDP1Q86V88 176 aa10.45□□□□□ -0.74
USP40-210ENST00000454354 NKAIN4Q8IVV8 208 aa10.45□□□□□ -0.74
USP40-210ENST00000454354 MICU2Q8IYU8 434 aa10.45□□□□□ -0.74
USP40-210ENST00000454354 POU5F2Q8N7G0 328 aa10.45□□□□□ -0.74
USP40-210ENST00000454354 MAPK1IP1LQ8NDC0 245 aa10.45□□□□□ -0.74
USP40-210ENST00000454354 OR6N1Q8NGY5 312 aa10.45□□□□□ -0.74
USP40-210ENST00000454354 RP9Q8TA86 221 aaKnown RBP10.45□□□□□ -0.74
USP40-210ENST00000454354 TMEM54Q969K7 222 aa10.45□□□□□ -0.74
USP40-210ENST00000454354 ZNF75AQ96N20 296 aa10.45□□□□□ -0.74
USP40-210ENST00000454354 RHNO1Q9BSD3 238 aa10.45□□□□□ -0.74
USP40-210ENST00000454354 ZNF442Q9H7R0 627 aa10.45□□□□□ -0.74
USP40-210ENST00000454354 ZNF224Q9NZL3 707 aa10.45□□□□□ -0.74
USP40-210ENST00000454354 ARMCX1Q9P291 453 aa10.45□□□□□ -0.74
USP40-210ENST00000454354 MALRD1Q5VYJ5 2156 aa10.45□□□□□ -0.74
USP40-210ENST00000454354 IGHV4-30-2A0A087WSY4 118 aa10.44□□□□□ -0.74
USP40-210ENST00000454354 ELOVL7A1L3X0 281 aa10.44□□□□□ -0.74
USP40-210ENST00000454354 B9A039 149 aa10.44□□□□□ -0.74
USP40-210ENST00000454354 INAFM1C9JVW0 142 aa10.44□□□□□ -0.74
USP40-210ENST00000454354 RNF13O43567 381 aa10.44□□□□□ -0.74
USP40-210ENST00000454354 SERPINI2O75830 405 aa10.44□□□□□ -0.74
USP40-210ENST00000454354 CSF3P09919 207 aa10.44□□□□□ -0.74
USP40-210ENST00000454354 TSPAN19P0C672 248 aa10.44□□□□□ -0.74
USP40-210ENST00000454354 COX4I1P13073 169 aa10.44□□□□□ -0.74
USP40-210ENST00000454354 B4GALT1P15291 398 aa10.44□□□□□ -0.74
USP40-210ENST00000454354 SERPINF1P36955 418 aa10.44□□□□□ -0.74
USP40-210ENST00000454354 IDH3GP51553 393 aaPredicted RBP10.44□□□□□ -0.74
USP40-210ENST00000454354 UGT2B15P54855 530 aa10.44□□□□□ -0.74
USP40-210ENST00000454354 TAS2R41P59536 307 aa10.44□□□□□ -0.74
USP40-210ENST00000454354 SNRPD2P62316 118 aaKnown RBP10.44□□□□□ -0.74
USP40-210ENST00000454354 HGFACQ04756 655 aa10.44□□□□□ -0.74
USP40-210ENST00000454354 LRRC23Q53EV4 343 aaPredicted RBP10.44□□□□□ -0.74
USP40-210ENST00000454354 C8orf82Q6P1X6 216 aaPredicted RBP10.44□□□□□ -0.74
USP40-210ENST00000454354 ZNF813Q6ZN06 617 aa10.44□□□□□ -0.74
USP40-210ENST00000454354 DEF8Q6ZN54 512 aa10.44□□□□□ -0.74
USP40-210ENST00000454354 NANOGNBQ7Z5D8 188 aa10.44□□□□□ -0.74
USP40-210ENST00000454354 LRRC17Q8N6Y2 441 aa10.44□□□□□ -0.74
USP40-210ENST00000454354 IL17RDQ8NFM7 739 aa10.44□□□□□ -0.74
USP40-210ENST00000454354 TMEM255BQ8WV15 326 aa10.44□□□□□ -0.74
USP40-210ENST00000454354 LIPHQ8WWY8 451 aa10.44□□□□□ -0.74
USP40-210ENST00000454354 FBXO17Q96EF6 278 aa10.44□□□□□ -0.74
USP40-210ENST00000454354 SLC25A44Q96H78 314 aaPredicted RBP10.44□□□□□ -0.74
USP40-210ENST00000454354 FOXB1Q99853 325 aa10.44□□□□□ -0.74
USP40-210ENST00000454354 PLK3Q9H4B4 646 aa10.44□□□□□ -0.74
USP40-210ENST00000454354 DENND2DQ9H6A0 471 aaPredicted RBP10.44□□□□□ -0.74
USP40-210ENST00000454354 NOX3Q9HBY0 568 aa10.44□□□□□ -0.74
USP40-210ENST00000454354 CMTM6Q9NX76 183 aa10.44□□□□□ -0.74
USP40-210ENST00000454354 GLTPQ9NZD2 209 aa10.44□□□□□ -0.74
USP40-210ENST00000454354 RIMS3Q9UJD0 308 aa10.44□□□□□ -0.74
USP40-210ENST00000454354 POFUT2Q9Y2G5 429 aa10.44□□□□□ -0.74
USP40-210ENST00000454354 CENPBD1B2RD01 187 aa10.43□□□□□ -0.74
USP40-210ENST00000454354 ATP8B1O43520 1251 aa10.43□□□□□ -0.74
USP40-210ENST00000454354 CD5LO43866 347 aa10.43□□□□□ -0.74
USP40-210ENST00000454354 CCDC22O60826 627 aa10.43□□□□□ -0.74
Retrieved 100 of 20,778 RNA–protein pairs in 27.5 ms