RNA–Protein interactions for RNA: ENST00000450966.5

USP40-208, Transcript of ubiquitin specific peptidase 40, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene USP40, Length 5,616 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-208ENST00000450966 A0A1W2PQU0 124 aa12.33□□□□□ -0.44
USP40-208ENST00000450966 TMEM129A0AVI4 362 aa12.33□□□□□ -0.44
USP40-208ENST00000450966 HMSDA8MTL9 139 aa12.33□□□□□ -0.44
USP40-208ENST00000450966 ANHXE9PGG2 379 aa12.33□□□□□ -0.44
USP40-208ENST00000450966 ERVH48-1M5A8F1 160 aa12.33□□□□□ -0.44
USP40-208ENST00000450966 DVL2O14641 736 aa12.33□□□□□ -0.44
USP40-208ENST00000450966 STC2O76061 302 aa12.33□□□□□ -0.44
USP40-208ENST00000450966 OR2W3Q7Z3T1 314 aa12.33□□□□□ -0.44
USP40-208ENST00000450966 CMTM1Q8IZ96 169 aa12.33□□□□□ -0.44
USP40-208ENST00000450966 MRPL38Q96DV4 380 aaKnown RBP12.33□□□□□ -0.44
USP40-208ENST00000450966 KCTD3Q9Y597 815 aa12.33□□□□□ -0.44
USP40-208ENST00000450966 GPR31O00270 319 aa12.33□□□□□ -0.44
USP40-208ENST00000450966 LEFTY1O75610 366 aa12.33□□□□□ -0.44
USP40-208ENST00000450966 TYRP1P17643 537 aa12.33□□□□□ -0.44
USP40-208ENST00000450966 TNFRSF1BP20333 461 aa12.33□□□□□ -0.44
USP40-208ENST00000450966 HNRNPA2B1P22626 353 aaKnown RBP12.33□□□□□ -0.44
USP40-208ENST00000450966 IFITM2Q01629 132 aa12.33□□□□□ -0.44
USP40-208ENST00000450966 LRRTM3Q86VH5 581 aa12.33□□□□□ -0.44
USP40-208ENST00000450966 HSD17B11Q8NBQ5 300 aa12.33□□□□□ -0.44
USP40-208ENST00000450966 ZNF738Q8NE65 137 aa12.33□□□□□ -0.44
USP40-208ENST00000450966 KLHDC9Q8NEP7 349 aa12.33□□□□□ -0.44
USP40-208ENST00000450966 OR52E2Q8NGJ4 325 aa12.33□□□□□ -0.44
USP40-208ENST00000450966 LMO3Q8TAP4 145 aa12.33□□□□□ -0.44
USP40-208ENST00000450966 CASD1Q96PB1 797 aa12.33□□□□□ -0.44
USP40-208ENST00000450966 OPN3Q9H1Y3 402 aaPredicted RBP12.33□□□□□ -0.44
USP40-208ENST00000450966 ARL2-SNX15V9GYD0 113 aa12.33□□□□□ -0.44
USP40-208ENST00000450966 CPEP16870 476 aa12.32□□□□□ -0.44
USP40-208ENST00000450966 OR10J1P30954 320 aa12.32□□□□□ -0.44
USP40-208ENST00000450966 MRPL49Q13405 166 aaKnown RBP12.32□□□□□ -0.44
USP40-208ENST00000450966 ILKQ13418 452 aa12.32□□□□□ -0.44
USP40-208ENST00000450966 GRINAQ7Z429 371 aa12.32□□□□□ -0.44
USP40-208ENST00000450966 CBLN2Q8IUK8 224 aa12.32□□□□□ -0.44
USP40-208ENST00000450966 TMEM234Q8WY98 164 aa12.32□□□□□ -0.44
USP40-208ENST00000450966 SLCO4A1Q96BD0 722 aa12.32□□□□□ -0.44
USP40-208ENST00000450966 TMEM19Q96HH6 336 aa12.32□□□□□ -0.44
USP40-208ENST00000450966 SLC41A2Q96JW4 573 aa12.32□□□□□ -0.44
USP40-208ENST00000450966 SAMD8Q96LT4 415 aa12.32□□□□□ -0.44
USP40-208ENST00000450966 ZCCHC4Q9H5U6 513 aa12.32□□□□□ -0.44
USP40-208ENST00000450966 SETD1AO15047 1707 aaKnown RBP12.32□□□□□ -0.44
USP40-208ENST00000450966 TMEM210A6NLX4 147 aa12.32□□□□□ -0.44
USP40-208ENST00000450966 HHLA1C9JL84 531 aa12.32□□□□□ -0.44
USP40-208ENST00000450966 IGFBP1P08833 259 aaPredicted RBP12.32□□□□□ -0.44
USP40-208ENST00000450966 FBP1P09467 338 aa12.32□□□□□ -0.44
USP40-208ENST00000450966 PGCP20142 388 aa12.32□□□□□ -0.44
USP40-208ENST00000450966 MMP11P24347 488 aa12.32□□□□□ -0.44
USP40-208ENST00000450966 AKR1C3P42330 323 aa12.32□□□□□ -0.44
USP40-208ENST00000450966 FBXW12Q6X9E4 464 aa12.32□□□□□ -0.44
USP40-208ENST00000450966 Q6ZTK2 550 aa12.32□□□□□ -0.44
USP40-208ENST00000450966 PHF6Q8IWS0 365 aaKnown RBP eCLIP12.32□□□□□ -0.44
USP40-208ENST00000450966 L3MBTL4Q8NA19 623 aa12.32□□□□□ -0.44
USP40-208ENST00000450966 ABHD4Q8TB40 342 aa12.32□□□□□ -0.44
USP40-208ENST00000450966 UCK1Q9HA47 277 aa12.32□□□□□ -0.44
USP40-208ENST00000450966 HRASLS2Q9NWW9 162 aa12.32□□□□□ -0.44
USP40-208ENST00000450966 GPR160Q9UJ42 338 aa12.32□□□□□ -0.44
USP40-208ENST00000450966 XKRY2A2RUG3 117 aa12.32□□□□□ -0.44
USP40-208ENST00000450966 K7ERQ8 282 aa12.32□□□□□ -0.44
USP40-208ENST00000450966 OR4D1Q15615 310 aa12.32□□□□□ -0.44
USP40-208ENST00000450966 SPICQ8N5J4 248 aa12.32□□□□□ -0.44
USP40-208ENST00000450966 OR2G3Q8NGZ4 309 aa12.32□□□□□ -0.44
USP40-208ENST00000450966 RXFP4Q8TDU9 374 aa12.32□□□□□ -0.44
USP40-208ENST00000450966 TOMM40LQ969M1 308 aa12.32□□□□□ -0.44
USP40-208ENST00000450966 MCHR2Q969V1 340 aa12.32□□□□□ -0.44
USP40-208ENST00000450966 MIB2Q96AX9 1013 aa12.32□□□□□ -0.44
USP40-208ENST00000450966 LYSMD1Q96S90 227 aa12.32□□□□□ -0.44
USP40-208ENST00000450966 FAM103A1Q9BTL3 118 aaKnown RBP12.32□□□□□ -0.44
USP40-208ENST00000450966 ZNF281Q9Y2X9 895 aa12.32□□□□□ -0.44
USP40-208ENST00000450966 SLC18B1Q6NT16 456 aa12.32□□□□□ -0.44
USP40-208ENST00000450966 Q6ZPB1 254 aaPredicted RBP12.32□□□□□ -0.44
USP40-208ENST00000450966 LRRTM1Q86UE6 522 aa12.32□□□□□ -0.44
USP40-208ENST00000450966 NRMQ8IXM6 262 aa12.32□□□□□ -0.44
USP40-208ENST00000450966 DEFB119Q8N690 84 aa12.32□□□□□ -0.44
USP40-208ENST00000450966 KIAA1958Q8N8K9 716 aa12.32□□□□□ -0.44
USP40-208ENST00000450966 OR13D1Q8NGV5 346 aa12.32□□□□□ -0.44
USP40-208ENST00000450966 CDS1Q92903 461 aa12.32□□□□□ -0.44
USP40-208ENST00000450966 SLC12A9Q9BXP2 914 aa12.32□□□□□ -0.44
USP40-208ENST00000450966 PARD6GQ9BYG4 376 aaPredicted RBP12.32□□□□□ -0.44
USP40-208ENST00000450966 CDCP1Q9H5V8 836 aa12.32□□□□□ -0.44
USP40-208ENST00000450966 TREM2Q9NZC2 230 aa12.32□□□□□ -0.44
USP40-208ENST00000450966 KAT6AQ92794 2004 aa12.32□□□□□ -0.44
USP40-208ENST00000450966 ZCWPW2A0A1B0GU75 182 aa12.31□□□□□ -0.44
USP40-208ENST00000450966 A0A1W2PP55 124 aa12.31□□□□□ -0.44
USP40-208ENST00000450966 TMEM115Q12893 351 aaPredicted RBP12.31□□□□□ -0.44
USP40-208ENST00000450966 PELI3Q8N2H9 469 aa12.31□□□□□ -0.44
USP40-208ENST00000450966 ZNF583Q96ND8 569 aa12.31□□□□□ -0.44
USP40-208ENST00000450966 LAMP3Q9UQV4 416 aa12.31□□□□□ -0.44
USP40-208ENST00000450966 KCNK5O95279 499 aa12.31□□□□□ -0.44
USP40-208ENST00000450966 PMS2P11Q13670 270 aa12.31□□□□□ -0.44
USP40-208ENST00000450966 PCBP2Q15366 365 aaKnown RBP eCLIP12.31□□□□□ -0.44
USP40-208ENST00000450966 XAF1Q6GPH4 301 aa12.31□□□□□ -0.44
USP40-208ENST00000450966 ZNF66Q6ZN08 573 aa12.31□□□□□ -0.44
USP40-208ENST00000450966 DUSP18Q8NEJ0 188 aa12.31□□□□□ -0.44
USP40-208ENST00000450966 OR52I1Q8NGK6 324 aa12.31□□□□□ -0.44
USP40-208ENST00000450966 MZB1Q8WU39 189 aa12.31□□□□□ -0.44
USP40-208ENST00000450966 CXorf58Q96LI9 332 aa12.31□□□□□ -0.44
USP40-208ENST00000450966 GPR137Q96N19 417 aa12.31□□□□□ -0.44
USP40-208ENST00000450966 YTHDF2Q9Y5A9 579 aaKnown RBP12.31□□□□□ -0.44
USP40-208ENST00000450966 CCDC88AQ3V6T2 1871 aa12.31□□□□□ -0.44
USP40-208ENST00000450966 GFRA2O00451 464 aa12.31□□□□□ -0.44
USP40-208ENST00000450966 GPR37L1O60883 481 aa12.31□□□□□ -0.44
USP40-208ENST00000450966 ARRB2P32121 409 aa12.31□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 36 ms