RNA–Protein interactions for RNA: ENST00000437679.3

LIMS3-201, Transcript of LIM zinc finger domain containing 3, humanhuman

TSL 1 (best) BASIC

Gene LIMS3, Length 1,220 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS3-201ENST00000437679 HTR3EA5X5Y0 456 aa13.27□□□□□ -0.29
LIMS3-201ENST00000437679 ZNF99A8MXY4 864 aaPredicted RBP13.27□□□□□ -0.29
LIMS3-201ENST00000437679 SOD3P08294 240 aa13.27□□□□□ -0.29
LIMS3-201ENST00000437679 DANCRP0C864 163 aa13.27□□□□□ -0.29
LIMS3-201ENST00000437679 PAX1P15863 534 aa13.27□□□□□ -0.29
LIMS3-201ENST00000437679 AGAP6Q5VW22 663 aa13.27□□□□□ -0.29
LIMS3-201ENST00000437679 GLYATQ6IB77 296 aa13.27□□□□□ -0.29
LIMS3-201ENST00000437679 YTHDF3Q7Z739 585 aaKnown RBP13.27□□□□□ -0.29
LIMS3-201ENST00000437679 CYP4Z1Q86W10 505 aa13.27□□□□□ -0.29
LIMS3-201ENST00000437679 KRTAP1-3Q8IUG1 177 aa13.27□□□□□ -0.29
LIMS3-201ENST00000437679 CCDC36Q8IYA8 594 aa13.27□□□□□ -0.29
LIMS3-201ENST00000437679 OFCC1Q8IZS5 231 aa13.27□□□□□ -0.29
LIMS3-201ENST00000437679 PGAM4Q8N0Y7 254 aa13.27□□□□□ -0.29
LIMS3-201ENST00000437679 ANKS4BQ8N8V4 417 aa13.27□□□□□ -0.29
LIMS3-201ENST00000437679 OR6X1Q8NH79 312 aa13.27□□□□□ -0.29
LIMS3-201ENST00000437679 ZNF837Q96EG3 531 aaPredicted RBP13.27□□□□□ -0.29
LIMS3-201ENST00000437679 DHRS9Q9BPW9 319 aa13.27□□□□□ -0.29
LIMS3-201ENST00000437679 KCNS3Q9BQ31 491 aa13.27□□□□□ -0.29
LIMS3-201ENST00000437679 ULBP2Q9BZM5 246 aa13.27□□□□□ -0.29
LIMS3-201ENST00000437679 NELFAQ9H3P2 528 aa13.27□□□□□ -0.29
LIMS3-201ENST00000437679 C20orf141Q9NUB4 165 aa13.27□□□□□ -0.29
LIMS3-201ENST00000437679 ZNF701Q9NV72 531 aaPredicted RBP13.27□□□□□ -0.29
LIMS3-201ENST00000437679 ARL8BQ9NVJ2 186 aa13.27□□□□□ -0.29
LIMS3-201ENST00000437679 NDE1Q9NXR1 346 aa13.27□□□□□ -0.29
LIMS3-201ENST00000437679 SNX13Q9Y5W8 968 aa13.27□□□□□ -0.29
LIMS3-201ENST00000437679 ATP23Q9Y6H3 246 aa13.27□□□□□ -0.29
LIMS3-201ENST00000437679 A0A1W2PRG6 482 aa13.26□□□□□ -0.29
LIMS3-201ENST00000437679 E7EQL1 145 aa13.26□□□□□ -0.29
LIMS3-201ENST00000437679 J3KTA2 159 aa13.26□□□□□ -0.29
LIMS3-201ENST00000437679 BCL10O95999 233 aa13.26□□□□□ -0.29
LIMS3-201ENST00000437679 IFI30P13284 250 aa13.26□□□□□ -0.29
LIMS3-201ENST00000437679 ATP5J2P56134 94 aa13.26□□□□□ -0.29
LIMS3-201ENST00000437679 TUBA1BP68363 451 aa13.26□□□□□ -0.29
LIMS3-201ENST00000437679 TUBA4AP68366 448 aa13.26□□□□□ -0.29
LIMS3-201ENST00000437679 MXRA7P84157 204 aa13.26□□□□□ -0.29
LIMS3-201ENST00000437679 RPL18Q07020 188 aaKnown RBP13.26□□□□□ -0.29
LIMS3-201ENST00000437679 TRAM2Q15035 370 aa13.26□□□□□ -0.29
LIMS3-201ENST00000437679 PGGHGQ32M88 737 aa13.26□□□□□ -0.29
LIMS3-201ENST00000437679 GKAP1Q5VSY0 366 aaPredicted RBP13.26□□□□□ -0.29
LIMS3-201ENST00000437679 TUBA1AQ71U36 451 aa13.26□□□□□ -0.29
LIMS3-201ENST00000437679 FBXL14Q8N1E6 418 aa13.26□□□□□ -0.29
LIMS3-201ENST00000437679 RNF148Q8N7C7 305 aa13.26□□□□□ -0.29
LIMS3-201ENST00000437679 LIPHQ8WWY8 451 aa13.26□□□□□ -0.29
LIMS3-201ENST00000437679 ZNF566Q969W8 418 aa13.26□□□□□ -0.29
LIMS3-201ENST00000437679 TRMT61AQ96FX7 289 aaKnown RBP13.26□□□□□ -0.29
LIMS3-201ENST00000437679 SLC25A44Q96H78 314 aaPredicted RBP13.26□□□□□ -0.29
LIMS3-201ENST00000437679 SLC38A2Q96QD8 506 aa13.26□□□□□ -0.29
LIMS3-201ENST00000437679 RHCGQ9UBD6 479 aa13.26□□□□□ -0.29
LIMS3-201ENST00000437679 SAMD4AQ9UPU9 718 aaKnown RBP13.26□□□□□ -0.29
LIMS3-201ENST00000437679 IGHV1-18A0A0C4DH31 117 aa13.25□□□□□ -0.29
LIMS3-201ENST00000437679 MCIDASD6RGH6 385 aa13.25□□□□□ -0.29
LIMS3-201ENST00000437679 OVOL3O00110 214 aa13.25□□□□□ -0.29
LIMS3-201ENST00000437679 SEC14L2O76054 403 aa13.25□□□□□ -0.29
LIMS3-201ENST00000437679 TCN1P20061 433 aaPredicted RBP13.25□□□□□ -0.29
LIMS3-201ENST00000437679 AQP2P41181 271 aa13.25□□□□□ -0.29
LIMS3-201ENST00000437679 CAPZA2P47755 286 aa13.25□□□□□ -0.29
LIMS3-201ENST00000437679 FABP6P51161 128 aa13.25□□□□□ -0.29
LIMS3-201ENST00000437679 DAP3P51398 398 aaKnown RBP13.25□□□□□ -0.29
LIMS3-201ENST00000437679 MNAT1P51948 309 aa13.25□□□□□ -0.29
LIMS3-201ENST00000437679 MELKQ14680 651 aa13.25□□□□□ -0.29
LIMS3-201ENST00000437679 C3orf36Q3SXR2 165 aa13.25□□□□□ -0.29
LIMS3-201ENST00000437679 SAMD4BQ5PRF9 694 aaKnown RBP13.25□□□□□ -0.29
LIMS3-201ENST00000437679 C16orf89Q6UX73 402 aa13.25□□□□□ -0.29
LIMS3-201ENST00000437679 ZNF813Q6ZN06 617 aa13.25□□□□□ -0.29
LIMS3-201ENST00000437679 HDDC2Q7Z4H3 204 aa13.25□□□□□ -0.29
LIMS3-201ENST00000437679 DTX2Q86UW9 622 aa13.25□□□□□ -0.29
LIMS3-201ENST00000437679 WDFY1Q8IWB7 410 aa13.25□□□□□ -0.29
LIMS3-201ENST00000437679 FAM169BQ8N8A8 192 aa13.25□□□□□ -0.29
LIMS3-201ENST00000437679 TMEM54Q969K7 222 aa13.25□□□□□ -0.29
LIMS3-201ENST00000437679 BPIFA2Q96DR5 249 aa13.25□□□□□ -0.29
LIMS3-201ENST00000437679 TRAF4Q9BUZ4 470 aaPredicted RBP13.25□□□□□ -0.29
LIMS3-201ENST00000437679 KATNB1Q9BVA0 655 aa13.25□□□□□ -0.29
LIMS3-201ENST00000437679 INIPQ9NRY2 104 aa13.25□□□□□ -0.29
LIMS3-201ENST00000437679 GLTPQ9NZD2 209 aa13.25□□□□□ -0.29
LIMS3-201ENST00000437679 CRNNQ9UBG3 495 aaPredicted RBP13.25□□□□□ -0.29
LIMS3-201ENST00000437679 MOKQ9UQ07 419 aa13.25□□□□□ -0.29
LIMS3-201ENST00000437679 FAM32AQ9Y421 112 aaKnown RBP13.25□□□□□ -0.29
LIMS3-201ENST00000437679 ENPP4Q9Y6X5 453 aa13.25□□□□□ -0.29
LIMS3-201ENST00000437679 ZNF469Q96JG9 3925 aaPredicted RBP13.24□□□□□ -0.29
LIMS3-201ENST00000437679 ATP6V1G2-DDX39BF2Z307 99 aa13.24□□□□□ -0.29
LIMS3-201ENST00000437679 FFAR1O14842 300 aa13.24□□□□□ -0.29
LIMS3-201ENST00000437679 PIP5K1CO60331 668 aa13.24□□□□□ -0.29
LIMS3-201ENST00000437679 FAM107AO95990 144 aa13.24□□□□□ -0.29
LIMS3-201ENST00000437679 IGHG1P01857 330 aa13.24□□□□□ -0.29
LIMS3-201ENST00000437679 CRYAAP02489 173 aa13.24□□□□□ -0.29
LIMS3-201ENST00000437679 F13BP05160 661 aa13.24□□□□□ -0.29
LIMS3-201ENST00000437679 HSD17B1P14061 328 aa13.24□□□□□ -0.29
LIMS3-201ENST00000437679 FOSL1P15407 271 aa13.24□□□□□ -0.29
LIMS3-201ENST00000437679 CBR1P16152 277 aa13.24□□□□□ -0.29
LIMS3-201ENST00000437679 TTKP33981 857 aa13.24□□□□□ -0.29
LIMS3-201ENST00000437679 CLRN1P58418 232 aa13.24□□□□□ -0.29
LIMS3-201ENST00000437679 KRT72Q14CN4 511 aa13.24□□□□□ -0.29
LIMS3-201ENST00000437679 ZNF544Q6NX49 715 aa13.24□□□□□ -0.29
LIMS3-201ENST00000437679 B3GLCTQ6Y288 498 aa13.24□□□□□ -0.29
LIMS3-201ENST00000437679 ZNF730Q6ZMV8 503 aa13.24□□□□□ -0.29
LIMS3-201ENST00000437679 RRM2BQ7LG56 351 aa13.24□□□□□ -0.29
LIMS3-201ENST00000437679 NRMQ8IXM6 262 aa13.24□□□□□ -0.29
LIMS3-201ENST00000437679 CDK20Q8IZL9 346 aa13.24□□□□□ -0.29
LIMS3-201ENST00000437679 RNF113BQ8IZP6 322 aaKnown RBP13.24□□□□□ -0.29
LIMS3-201ENST00000437679 MUC15Q8N387 334 aa13.24□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 56.6 ms