RNA–Protein interactions for RNA: ENST00000437048.6

VPS53-204, Transcript of VPS53, GARP complex subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS53, Length 13,106 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-204ENST00000437048 SSX1Q16384 188 aa6.68□□□□□ -1.34
VPS53-204ENST00000437048 SLCO4A1Q96BD0 722 aa6.68□□□□□ -1.34
VPS53-204ENST00000437048 WDR92Q96MX6 357 aa6.68□□□□□ -1.34
VPS53-204ENST00000437048 SLC25A19Q9HC21 320 aa6.68□□□□□ -1.34
VPS53-204ENST00000437048 AKIP1Q9NQ31 210 aa6.68□□□□□ -1.34
VPS53-204ENST00000437048 TM7SF3Q9NS93 570 aa6.68□□□□□ -1.34
VPS53-204ENST00000437048 ZNF223Q9UK11 482 aaPredicted RBP6.68□□□□□ -1.34
VPS53-204ENST00000437048 PADI3Q9ULW8 664 aa6.68□□□□□ -1.34
VPS53-204ENST00000437048 PSAT1Q9Y617 370 aa6.68□□□□□ -1.34
VPS53-204ENST00000437048 HAND1O96004 215 aa6.68□□□□□ -1.34
VPS53-204ENST00000437048 MBPP02686 304 aaPredicted RBP6.68□□□□□ -1.34
VPS53-204ENST00000437048 RRASP10301 218 aa6.68□□□□□ -1.34
VPS53-204ENST00000437048 SELEP16581 610 aa6.68□□□□□ -1.34
VPS53-204ENST00000437048 DOC2BQ14184 412 aa6.68□□□□□ -1.34
VPS53-204ENST00000437048 ELOBQ15370 118 aa6.68□□□□□ -1.34
VPS53-204ENST00000437048 CRTC1Q6UUV9 634 aa6.68□□□□□ -1.34
VPS53-204ENST00000437048 CATSPERDQ86XM0 798 aa6.68□□□□□ -1.34
VPS53-204ENST00000437048 TEX19Q8NA77 164 aa6.68□□□□□ -1.34
VPS53-204ENST00000437048 BSCL2Q96G97 398 aaPredicted RBP6.68□□□□□ -1.34
VPS53-204ENST00000437048 SPANXCQ9NY87 97 aa6.68□□□□□ -1.34
VPS53-204ENST00000437048 MAS1P04201 325 aa6.68□□□□□ -1.34
VPS53-204ENST00000437048 SOWAHCQ53LP3 525 aaPredicted RBP6.68□□□□□ -1.34
VPS53-204ENST00000437048 SLC16A14Q7RTX9 510 aa6.68□□□□□ -1.34
VPS53-204ENST00000437048 CLEC14AQ86T13 490 aa6.68□□□□□ -1.34
VPS53-204ENST00000437048 MMP21Q8N119 569 aa6.68□□□□□ -1.34
VPS53-204ENST00000437048 ZCCHC10Q8TBK6 192 aa6.68□□□□□ -1.34
VPS53-204ENST00000437048 EDARADDQ8WWZ3 215 aa6.68□□□□□ -1.34
VPS53-204ENST00000437048 UBXN10Q96LJ8 280 aa6.68□□□□□ -1.34
VPS53-204ENST00000437048 CLDN5O00501 218 aa6.68□□□□□ -1.34
VPS53-204ENST00000437048 PRKACGP22612 351 aa6.68□□□□□ -1.34
VPS53-204ENST00000437048 HOXD13P35453 343 aa6.68□□□□□ -1.34
VPS53-204ENST00000437048 SOX3P41225 446 aa6.68□□□□□ -1.34
VPS53-204ENST00000437048 P2RX1P51575 399 aa6.68□□□□□ -1.34
VPS53-204ENST00000437048 DCBLD1Q8N8Z6 715 aa6.68□□□□□ -1.34
VPS53-204ENST00000437048 CLEC1AQ8NC01 280 aa6.68□□□□□ -1.34
VPS53-204ENST00000437048 IFI44Q8TCB0 444 aa6.68□□□□□ -1.34
VPS53-204ENST00000437048 HBEGFQ99075 208 aa6.68□□□□□ -1.34
VPS53-204ENST00000437048 ALG12Q9BV10 488 aa6.68□□□□□ -1.34
VPS53-204ENST00000437048 HRO43593 1189 aa6.68□□□□□ -1.34
VPS53-204ENST00000437048 CTXN1P60606 82 aa6.68□□□□□ -1.34
VPS53-204ENST00000437048 TMEM184AQ6ZMB5 413 aa6.68□□□□□ -1.34
VPS53-204ENST00000437048 LPAR4Q99677 370 aa6.68□□□□□ -1.34
VPS53-204ENST00000437048 BANF2Q9H503 90 aa6.68□□□□□ -1.34
VPS53-204ENST00000437048 DDX60Q8IY21 1712 aaKnown RBP6.68□□□□□ -1.34
VPS53-204ENST00000437048 ANTXRLA6NF34 631 aa6.67□□□□□ -1.34
VPS53-204ENST00000437048 GABRR3A8MPY1 467 aa6.67□□□□□ -1.34
VPS53-204ENST00000437048 GABRA3P34903 492 aa6.67□□□□□ -1.34
VPS53-204ENST00000437048 PPP1CBP62140 327 aa6.67□□□□□ -1.34
VPS53-204ENST00000437048 MAT1AQ00266 395 aaKnown RBP6.67□□□□□ -1.34
VPS53-204ENST00000437048 RAB33AQ14088 237 aa6.67□□□□□ -1.34
VPS53-204ENST00000437048 TRAT1Q6PIZ9 186 aa6.67□□□□□ -1.34
VPS53-204ENST00000437048 MRPL21Q7Z2W9 205 aaKnown RBP6.67□□□□□ -1.34
VPS53-204ENST00000437048 L3MBTL4Q8NA19 623 aa6.67□□□□□ -1.34
VPS53-204ENST00000437048 LINC01599Q8WXQ3 324 aa6.67□□□□□ -1.34
VPS53-204ENST00000437048 STACQ99469 402 aa6.67□□□□□ -1.34
VPS53-204ENST00000437048 RNF2Q99496 336 aa6.67□□□□□ -1.34
VPS53-204ENST00000437048 ZDHHC11Q9H8X9 412 aa6.67□□□□□ -1.34
VPS53-204ENST00000437048 MANBALQ9NQG1 85 aa6.67□□□□□ -1.34
VPS53-204ENST00000437048 USP3Q9Y6I4 520 aa6.67□□□□□ -1.34
VPS53-204ENST00000437048 CDK5RAP2Q96SN8 1893 aa6.67□□□□□ -1.34
VPS53-204ENST00000437048 TMEM238LA0A1B0GVL6 79 aa6.67□□□□□ -1.34
VPS53-204ENST00000437048 A6NJY4 79 aa6.67□□□□□ -1.34
VPS53-204ENST00000437048 HOXB1P14653 301 aaPredicted RBP6.67□□□□□ -1.34
VPS53-204ENST00000437048 CRMP1Q14194 572 aa6.67□□□□□ -1.34
VPS53-204ENST00000437048 C12orf54Q6X4T0 127 aa6.67□□□□□ -1.34
VPS53-204ENST00000437048 LAX1Q8IWV1 398 aa6.67□□□□□ -1.34
VPS53-204ENST00000437048 IGSF5Q9NSI5 407 aa6.67□□□□□ -1.34
VPS53-204ENST00000437048 IL20RAQ9UHF4 553 aa6.67□□□□□ -1.34
VPS53-204ENST00000437048 NXT1Q9UKK6 140 aaKnown RBP6.67□□□□□ -1.34
VPS53-204ENST00000437048 A0A0U1RQF3 1178 aa6.67□□□□□ -1.34
VPS53-204ENST00000437048 A0A1B0GVT2 93 aa6.67□□□□□ -1.34
VPS53-204ENST00000437048 RFPL4AA6NLU0 287 aa6.67□□□□□ -1.34
VPS53-204ENST00000437048 RFPL4AL1F8VTS6 287 aa6.67□□□□□ -1.34
VPS53-204ENST00000437048 G3V3Q6 166 aa6.67□□□□□ -1.34
VPS53-204ENST00000437048 TRAPPC2LH3BP13 241 aa6.67□□□□□ -1.34
VPS53-204ENST00000437048 SLC11A1P49279 550 aa6.67□□□□□ -1.34
VPS53-204ENST00000437048 SLC10A1Q14973 349 aa6.67□□□□□ -1.34
VPS53-204ENST00000437048 NPY5RQ15761 445 aa6.67□□□□□ -1.34
VPS53-204ENST00000437048 CFAP52Q8N1V2 620 aa6.67□□□□□ -1.34
VPS53-204ENST00000437048 NANOGP1Q8N7R0 232 aa6.67□□□□□ -1.34
VPS53-204ENST00000437048 IRF7Q92985 503 aa6.67□□□□□ -1.34
VPS53-204ENST00000437048 CRB3Q9BUF7 120 aa6.67□□□□□ -1.34
VPS53-204ENST00000437048 TRMT61BQ9BVS5 477 aaKnown RBP6.67□□□□□ -1.34
VPS53-204ENST00000437048 FZD3Q9NPG1 666 aa6.67□□□□□ -1.34
VPS53-204ENST00000437048 ANKRD31Q8N7Z5 1873 aa6.67□□□□□ -1.34
VPS53-204ENST00000437048 DUX1O43812 170 aa6.67□□□□□ -1.34
VPS53-204ENST00000437048 IHHQ14623 411 aa6.67□□□□□ -1.34
VPS53-204ENST00000437048 SIX1Q15475 284 aaPredicted RBP6.67□□□□□ -1.34
VPS53-204ENST00000437048 FAM219BQ5XKK7 198 aa6.67□□□□□ -1.34
VPS53-204ENST00000437048 DLK2Q6UY11 383 aa6.67□□□□□ -1.34
VPS53-204ENST00000437048 SLC7A5P1Q8MH63 180 aa6.67□□□□□ -1.34
VPS53-204ENST00000437048 NRG4Q8WWG1 115 aa6.67□□□□□ -1.34
VPS53-204ENST00000437048 SRRQ9GZT4 340 aa6.67□□□□□ -1.34
VPS53-204ENST00000437048 KIF26BQ2KJY2 2108 aa6.67□□□□□ -1.34
VPS53-204ENST00000437048 CKAP5Q14008 2032 aa6.67□□□□□ -1.34
VPS53-204ENST00000437048 ZCWPW2A0A1B0GU75 182 aa6.67□□□□□ -1.34
VPS53-204ENST00000437048 MYBPHLA2RUH7 354 aa6.67□□□□□ -1.34
VPS53-204ENST00000437048 OR5H8P0DN80 308 aa6.67□□□□□ -1.34
VPS53-204ENST00000437048 MS4A2Q01362 244 aa6.67□□□□□ -1.34
VPS53-204ENST00000437048 LRIT3Q3SXY7 679 aa6.67□□□□□ -1.34
Retrieved 100 of 20,778 RNA–protein pairs in 41.5 ms