RNA–Protein interactions for RNA: ENST00000431640.5

DDX56-204, Transcript of DEAD-box helicase 56, humanhuman

TSL 1 (best) BASIC

Gene DDX56, Length 1,554 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX56-204ENST00000431640 CPEB2Q7Z5Q1 589 aaKnown RBP11.61□□□□□ -0.55
DDX56-204ENST00000431640 UBQLNLQ8IYU4 475 aa11.61□□□□□ -0.55
DDX56-204ENST00000431640 BMPERQ8N8U9 685 aa11.61□□□□□ -0.55
DDX56-204ENST00000431640 SCAIQ8N9R8 606 aa11.61□□□□□ -0.55
DDX56-204ENST00000431640 SLC38A9Q8NBW4 561 aa11.61□□□□□ -0.55
DDX56-204ENST00000431640 APCDD1LQ8NCL9 501 aa11.61□□□□□ -0.55
DDX56-204ENST00000431640 NLGN4YQ8NFZ3 816 aaPredicted RBP11.61□□□□□ -0.55
DDX56-204ENST00000431640 ZPLD1Q8TCW7 415 aa11.61□□□□□ -0.55
DDX56-204ENST00000431640 RPS4Y2Q8TD47 263 aa11.61□□□□□ -0.55
DDX56-204ENST00000431640 ZNF524Q96C55 264 aa11.61□□□□□ -0.55
DDX56-204ENST00000431640 KLHL15Q96M94 604 aa11.61□□□□□ -0.55
DDX56-204ENST00000431640 AGAP4Q96P64 663 aa11.61□□□□□ -0.55
DDX56-204ENST00000431640 TSPAN32Q96QS1 320 aa11.61□□□□□ -0.55
DDX56-204ENST00000431640 PPIL3Q9H2H8 161 aaKnown RBP11.61□□□□□ -0.55
DDX56-204ENST00000431640 SDHAF3Q9NRP4 125 aa11.61□□□□□ -0.55
DDX56-204ENST00000431640 EXTL2Q9UBQ6 330 aa11.61□□□□□ -0.55
DDX56-204ENST00000431640 COPS3Q9UNS2 423 aa11.61□□□□□ -0.55
DDX56-204ENST00000431640 ZNF281Q9Y2X9 895 aa11.61□□□□□ -0.55
DDX56-204ENST00000431640 FAM186AA6NE01 2351 aa11.6□□□□□ -0.55
DDX56-204ENST00000431640 TMEM72A0PK05 275 aa11.6□□□□□ -0.55
DDX56-204ENST00000431640 SERPINI2O75830 405 aa11.6□□□□□ -0.55
DDX56-204ENST00000431640 ZFAND5O76080 213 aa11.6□□□□□ -0.55
DDX56-204ENST00000431640 ZNF432O94892 652 aa11.6□□□□□ -0.55
DDX56-204ENST00000431640 KRT8P05787 483 aa11.6□□□□□ -0.55
DDX56-204ENST00000431640 CCL4P13236 92 aa11.6□□□□□ -0.55
DDX56-204ENST00000431640 ELK1P19419 428 aa11.6□□□□□ -0.55
DDX56-204ENST00000431640 RBMS1P29558 406 aaKnown RBP11.6□□□□□ -0.55
DDX56-204ENST00000431640 APOBEC1P41238 236 aaKnown RBP11.6□□□□□ -0.55
DDX56-204ENST00000431640 TMED10P49755 219 aaKnown RBP11.6□□□□□ -0.55
DDX56-204ENST00000431640 RPL27P61353 136 aaKnown RBP11.6□□□□□ -0.55
DDX56-204ENST00000431640 EGR3Q06889 387 aa11.6□□□□□ -0.55
DDX56-204ENST00000431640 DBPQ10586 325 aaPredicted RBP11.6□□□□□ -0.55
DDX56-204ENST00000431640 TRA2AQ13595 282 aaKnown RBP eCLIP11.6□□□□□ -0.55
DDX56-204ENST00000431640 TAB1Q15750 504 aa11.6□□□□□ -0.55
DDX56-204ENST00000431640 COL28A1Q2UY09 1125 aa11.6□□□□□ -0.55
DDX56-204ENST00000431640 HSD17B12Q53GQ0 312 aa11.6□□□□□ -0.55
DDX56-204ENST00000431640 MESTQ5EB52 335 aa11.6□□□□□ -0.55
DDX56-204ENST00000431640 HACD4Q5VWC8 232 aa11.6□□□□□ -0.55
DDX56-204ENST00000431640 ZNF385CQ66K41 422 aaPredicted RBP11.6□□□□□ -0.55
DDX56-204ENST00000431640 PAPD4Q6PIY7 484 aaKnown RBP11.6□□□□□ -0.55
DDX56-204ENST00000431640 ZNF517Q6ZMY9 492 aaPredicted RBP11.6□□□□□ -0.55
DDX56-204ENST00000431640 LSRQ86X29 649 aaPredicted RBP11.6□□□□□ -0.55
DDX56-204ENST00000431640 CDC20BQ86Y33 519 aa11.6□□□□□ -0.55
DDX56-204ENST00000431640 TIGD4Q8IY51 512 aa11.6□□□□□ -0.55
DDX56-204ENST00000431640 GHDCQ8N2G8 530 aa11.6□□□□□ -0.55
DDX56-204ENST00000431640 RFLNBQ8N5W9 214 aa11.6□□□□□ -0.55
DDX56-204ENST00000431640 ZNF248Q8NDW4 579 aa11.6□□□□□ -0.55
DDX56-204ENST00000431640 SLC25A36Q96CQ1 311 aa11.6□□□□□ -0.55
DDX56-204ENST00000431640 KCNJ15Q99712 375 aa11.6□□□□□ -0.55
DDX56-204ENST00000431640 MRI1Q9BV20 369 aa11.6□□□□□ -0.55
DDX56-204ENST00000431640 TXNIPQ9H3M7 391 aa11.6□□□□□ -0.55
DDX56-204ENST00000431640 WDR76Q9H967 626 aa11.6□□□□□ -0.55
DDX56-204ENST00000431640 MARCH7Q9H992 704 aa11.6□□□□□ -0.55
DDX56-204ENST00000431640 LAMP5Q9UJQ1 280 aa11.6□□□□□ -0.55
DDX56-204ENST00000431640 RASD1Q9Y272 281 aa11.6□□□□□ -0.55
DDX56-204ENST00000431640 FKBP7Q9Y680 259 aa11.6□□□□□ -0.55
DDX56-204ENST00000431640 PCNX2A6NKB5 2137 aa11.59□□□□□ -0.55
DDX56-204ENST00000431640 IGHV3-20A0A0C4DH32 117 aa11.59□□□□□ -0.55
DDX56-204ENST00000431640 A0A0G2JK05 382 aa11.59□□□□□ -0.55
DDX56-204ENST00000431640 CENPBD1B2RD01 187 aa11.59□□□□□ -0.55
DDX56-204ENST00000431640 DVL2O14641 736 aa11.59□□□□□ -0.55
DDX56-204ENST00000431640 ARHGEF9O43307 516 aa11.59□□□□□ -0.55
DDX56-204ENST00000431640 GMFGO60234 142 aa11.59□□□□□ -0.55
DDX56-204ENST00000431640 IGHMP01871 453 aa11.59□□□□□ -0.55
DDX56-204ENST00000431640 FTH1P19P0C7X4 201 aa11.59□□□□□ -0.55
DDX56-204ENST00000431640 FGF5P12034 268 aa11.59□□□□□ -0.55
DDX56-204ENST00000431640 THBS2P35442 1172 aa11.59□□□□□ -0.55
DDX56-204ENST00000431640 PITPNBP48739 271 aa11.59□□□□□ -0.55
DDX56-204ENST00000431640 DLX5P56178 289 aa11.59□□□□□ -0.55
DDX56-204ENST00000431640 TPTEP56180 551 aa11.59□□□□□ -0.55
DDX56-204ENST00000431640 RPS11P62280 158 aaKnown RBP eCLIP11.59□□□□□ -0.55
DDX56-204ENST00000431640 PITPNAQ00169 270 aa11.59□□□□□ -0.55
DDX56-204ENST00000431640 POMZP3Q6PJE2 187 aa11.59□□□□□ -0.55
DDX56-204ENST00000431640 TMEM205Q6UW68 189 aa11.59□□□□□ -0.55
DDX56-204ENST00000431640 BAIAP2L2Q6UXY1 529 aa11.59□□□□□ -0.55
DDX56-204ENST00000431640 NR2C2APQ86WQ0 139 aa11.59□□□□□ -0.55
DDX56-204ENST00000431640 RDH10Q8IZV5 341 aa11.59□□□□□ -0.55
DDX56-204ENST00000431640 OR6V1Q8N148 313 aa11.59□□□□□ -0.55
DDX56-204ENST00000431640 CELF2-AS1Q8N7Q2 184 aa11.59□□□□□ -0.55
DDX56-204ENST00000431640 SAMD12Q8N8I0 201 aa11.59□□□□□ -0.55
DDX56-204ENST00000431640 ZNF511Q8NB15 262 aa11.59□□□□□ -0.55
DDX56-204ENST00000431640 ZC3HAV1LQ96H79 300 aaKnown RBP11.59□□□□□ -0.55
DDX56-204ENST00000431640 PTDSS2Q9BVG9 487 aa11.59□□□□□ -0.55
DDX56-204ENST00000431640 C11orf54Q9H0W9 315 aaPredicted RBP11.59□□□□□ -0.55
DDX56-204ENST00000431640 ACOXLQ9NUZ1 547 aa11.59□□□□□ -0.55
DDX56-204ENST00000431640 MRPL39Q9NYK5 338 aaKnown RBP11.59□□□□□ -0.55
DDX56-204ENST00000431640 NXT1Q9UKK6 140 aaKnown RBP11.59□□□□□ -0.55
DDX56-204ENST00000431640 PCDHGA1Q9Y5H4 931 aa11.59□□□□□ -0.55
DDX56-204ENST00000431640 CEP250Q9BV73 2442 aa11.59□□□□□ -0.55
DDX56-204ENST00000431640 TNFSF12-TNFSF13A0A0A6YY99 330 aa11.58□□□□□ -0.55
DDX56-204ENST00000431640 TRBV11-1A0A0K0K1C0 115 aa11.58□□□□□ -0.55
DDX56-204ENST00000431640 FAM171A2A8MVW0 826 aa11.58□□□□□ -0.55
DDX56-204ENST00000431640 MAGEB4O15481 346 aaPredicted RBP11.58□□□□□ -0.55
DDX56-204ENST00000431640 PLA2G10O15496 165 aa11.58□□□□□ -0.55
DDX56-204ENST00000431640 ITGA10O75578 1167 aa11.58□□□□□ -0.55
DDX56-204ENST00000431640 TRAPPC2P0DI81 140 aa11.58□□□□□ -0.55
DDX56-204ENST00000431640 TRAPPC2BP0DI82 140 aa11.58□□□□□ -0.55
DDX56-204ENST00000431640 SRMP19623 302 aa11.58□□□□□ -0.55
DDX56-204ENST00000431640 MAPK3P27361 379 aaPredicted RBP11.58□□□□□ -0.55
DDX56-204ENST00000431640 GRPRP30550 384 aa11.58□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 37.7 ms