RNA–Protein interactions for RNA: ENST00000411423.1

SF3A1-202, Transcript of splicing factor 3a subunit 1, humanhuman

TSL 4

Gene SF3A1, Length 548 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1-202ENST00000411423 PLCE1Q9P212 2302 aa16.58■□□□□ 0.24
SF3A1-202ENST00000411423 C2CD3Q4AC94 2353 aa16.57■□□□□ 0.24
SF3A1-202ENST00000411423 ZNF99A8MXY4 864 aaPredicted RBP16.57■□□□□ 0.24
SF3A1-202ENST00000411423 J3KTA2 159 aa16.57■□□□□ 0.24
SF3A1-202ENST00000411423 AKAP8O43823 692 aaKnown RBP16.57■□□□□ 0.24
SF3A1-202ENST00000411423 SNX3O60493 162 aa16.57■□□□□ 0.24
SF3A1-202ENST00000411423 IGKV3-15P01624 115 aa16.57■□□□□ 0.24
SF3A1-202ENST00000411423 MT-ND1P03886 318 aa16.57■□□□□ 0.24
SF3A1-202ENST00000411423 LSP1P33241 339 aa16.57■□□□□ 0.24
SF3A1-202ENST00000411423 YAP1P46937 504 aaKnown RBP16.57■□□□□ 0.24
SF3A1-202ENST00000411423 NUDT2P50583 147 aa16.57■□□□□ 0.24
SF3A1-202ENST00000411423 RUNX1T1Q06455 604 aa16.57■□□□□ 0.24
SF3A1-202ENST00000411423 CLEC12BQ2HXU8 276 aa16.57■□□□□ 0.24
SF3A1-202ENST00000411423 MST1LQ2TV78 715 aa16.57■□□□□ 0.24
SF3A1-202ENST00000411423 C1QTNF12Q5T7M4 302 aa16.57■□□□□ 0.24
SF3A1-202ENST00000411423 AGAP6Q5VW22 663 aa16.57■□□□□ 0.24
SF3A1-202ENST00000411423 HACD2Q6Y1H2 254 aa16.57■□□□□ 0.24
SF3A1-202ENST00000411423 SLC35D2Q76EJ3 337 aa16.57■□□□□ 0.24
SF3A1-202ENST00000411423 MAPK1IP1LQ8NDC0 245 aa16.57■□□□□ 0.24
SF3A1-202ENST00000411423 TMEM239Q8WW34 195 aa16.57■□□□□ 0.24
SF3A1-202ENST00000411423 TMEM54Q969K7 222 aa16.57■□□□□ 0.24
SF3A1-202ENST00000411423 TRMT61AQ96FX7 289 aaKnown RBP16.57■□□□□ 0.24
SF3A1-202ENST00000411423 ALG2Q9H553 416 aa16.57■□□□□ 0.24
SF3A1-202ENST00000411423 CXCR6O00574 342 aa16.56■□□□□ 0.24
SF3A1-202ENST00000411423 FFAR1O14842 300 aa16.56■□□□□ 0.24
SF3A1-202ENST00000411423 RNF13O43567 381 aa16.56■□□□□ 0.24
SF3A1-202ENST00000411423 OR7A10O76100 309 aa16.56■□□□□ 0.24
SF3A1-202ENST00000411423 IFNA14P01570 189 aa16.56■□□□□ 0.24
SF3A1-202ENST00000411423 NCK1P16333 377 aa16.56■□□□□ 0.24
SF3A1-202ENST00000411423 NAAAQ02083 359 aa16.56■□□□□ 0.24
SF3A1-202ENST00000411423 CLEC9AQ6UXN8 241 aa16.56■□□□□ 0.24
SF3A1-202ENST00000411423 TSEN54Q7Z6J9 526 aaKnown RBP16.56■□□□□ 0.24
SF3A1-202ENST00000411423 ARPINQ7Z6K5 226 aa16.56■□□□□ 0.24
SF3A1-202ENST00000411423 MDP1Q86V88 176 aa16.56■□□□□ 0.24
SF3A1-202ENST00000411423 MEX3DQ86XN8 651 aaKnown RBP16.56■□□□□ 0.24
SF3A1-202ENST00000411423 FBXL14Q8N1E6 418 aa16.56■□□□□ 0.24
SF3A1-202ENST00000411423 RBM15BQ8NDT2 890 aaKnown RBP16.56■□□□□ 0.24
SF3A1-202ENST00000411423 POM121Q96HA1 1249 aa16.56■□□□□ 0.24
SF3A1-202ENST00000411423 ZNF75AQ96N20 296 aa16.56■□□□□ 0.24
SF3A1-202ENST00000411423 HOPXQ9BPY8 73 aaPredicted RBP16.56■□□□□ 0.24
SF3A1-202ENST00000411423 KATNB1Q9BVA0 655 aa16.56■□□□□ 0.24
SF3A1-202ENST00000411423 HEATR1Q9H583 2144 aaKnown RBP16.56■□□□□ 0.24
SF3A1-202ENST00000411423 EFCAB1Q9HAE3 211 aa16.56■□□□□ 0.24
SF3A1-202ENST00000411423 MAN2C1Q9NTJ4 1040 aa16.56■□□□□ 0.24
SF3A1-202ENST00000411423 FAIMQ9NVQ4 179 aa16.56■□□□□ 0.24
SF3A1-202ENST00000411423 B3GNT2Q9NY97 397 aa16.56■□□□□ 0.24
SF3A1-202ENST00000411423 RHCGQ9UBD6 479 aa16.56■□□□□ 0.24
SF3A1-202ENST00000411423 ABCD2Q9UBJ2 740 aa16.56■□□□□ 0.24
SF3A1-202ENST00000411423 NIPBLQ6KC79 2804 aaeCLIP16.55■□□□□ 0.24
SF3A1-202ENST00000411423 ZNF726A6NNF4 738 aa16.55■□□□□ 0.24
SF3A1-202ENST00000411423 OR6A2O95222 327 aa16.55■□□□□ 0.24
SF3A1-202ENST00000411423 HLA-HP01893 362 aa16.55■□□□□ 0.24
SF3A1-202ENST00000411423 F13BP05160 661 aa16.55■□□□□ 0.24
SF3A1-202ENST00000411423 TSPAN19P0C672 248 aa16.55■□□□□ 0.24
SF3A1-202ENST00000411423 UMPSP11172 480 aa16.55■□□□□ 0.24
SF3A1-202ENST00000411423 HOXB1P14653 301 aaPredicted RBP16.55■□□□□ 0.24
SF3A1-202ENST00000411423 CBR1P16152 277 aa16.55■□□□□ 0.24
SF3A1-202ENST00000411423 RBM34P42696 430 aaKnown RBP16.55■□□□□ 0.24
SF3A1-202ENST00000411423 IDH3GP51553 393 aaPredicted RBP16.55■□□□□ 0.24
SF3A1-202ENST00000411423 HGFACQ04756 655 aa16.55■□□□□ 0.24
SF3A1-202ENST00000411423 RPL18Q07020 188 aaKnown RBP16.55■□□□□ 0.24
SF3A1-202ENST00000411423 KRTAP1-1Q07627 177 aa16.55■□□□□ 0.24
SF3A1-202ENST00000411423 ZNF544Q6NX49 715 aa16.55■□□□□ 0.24
SF3A1-202ENST00000411423 LRFN4Q6PJG9 635 aa16.55■□□□□ 0.24
SF3A1-202ENST00000411423 CBLL1Q75N03 491 aa16.55■□□□□ 0.24
SF3A1-202ENST00000411423 ZNF627Q7L945 461 aa16.55■□□□□ 0.24
SF3A1-202ENST00000411423 DEPDC4Q8N2C3 294 aa16.55■□□□□ 0.24
SF3A1-202ENST00000411423 OR6N1Q8NGY5 312 aa16.55■□□□□ 0.24
SF3A1-202ENST00000411423 OR6X1Q8NH79 312 aa16.55■□□□□ 0.24
SF3A1-202ENST00000411423 MOSPD2Q8NHP6 518 aa16.55■□□□□ 0.24
SF3A1-202ENST00000411423 FGFBP3Q8TAT2 258 aa16.55■□□□□ 0.24
SF3A1-202ENST00000411423 PRRC1Q96M27 445 aa16.55■□□□□ 0.24
SF3A1-202ENST00000411423 ULBP2Q9BZM5 246 aa16.55■□□□□ 0.24
SF3A1-202ENST00000411423 POLR2J2Q9GZM3 115 aaKnown RBP16.55■□□□□ 0.24
SF3A1-202ENST00000411423 POLR2J3Q9H1A7 115 aaKnown RBP16.55■□□□□ 0.24
SF3A1-202ENST00000411423 RNF223E7ERA6 249 aa16.54■□□□□ 0.24
SF3A1-202ENST00000411423 BLOC1S5-TXNDC5H3BN57 136 aa16.54■□□□□ 0.24
SF3A1-202ENST00000411423 PRSS23O95084 383 aa16.54■□□□□ 0.24
SF3A1-202ENST00000411423 HEXAP06865 529 aa16.54■□□□□ 0.24
SF3A1-202ENST00000411423 B4GALT1P15291 398 aa16.54■□□□□ 0.24
SF3A1-202ENST00000411423 APOBEC3AP31941 199 aaPredicted RBP16.54■□□□□ 0.24
SF3A1-202ENST00000411423 AQP2P41181 271 aa16.54■□□□□ 0.24
SF3A1-202ENST00000411423 CSNK1A1P48729 337 aa16.54■□□□□ 0.24
SF3A1-202ENST00000411423 PSME3P61289 254 aa16.54■□□□□ 0.24
SF3A1-202ENST00000411423 SWI5Q1ZZU3 235 aa16.54■□□□□ 0.24
SF3A1-202ENST00000411423 C3orf36Q3SXR2 165 aa16.54■□□□□ 0.24
SF3A1-202ENST00000411423 ZNF813Q6ZN06 617 aa16.54■□□□□ 0.24
SF3A1-202ENST00000411423 NANOGNBQ7Z5D8 188 aa16.54■□□□□ 0.24
SF3A1-202ENST00000411423 FAM169BQ8N8A8 192 aa16.54■□□□□ 0.24
SF3A1-202ENST00000411423 SGTBQ96EQ0 304 aa16.54■□□□□ 0.24
SF3A1-202ENST00000411423 FOXB1Q99853 325 aa16.54■□□□□ 0.24
SF3A1-202ENST00000411423 GLTPQ9NZD2 209 aa16.54■□□□□ 0.24
SF3A1-202ENST00000411423 AP3M1Q9Y2T2 418 aa16.54■□□□□ 0.24
SF3A1-202ENST00000411423 GMNCA6NCL1 334 aa16.53■□□□□ 0.24
SF3A1-202ENST00000411423 SSX4O60224 188 aa16.53■□□□□ 0.24
SF3A1-202ENST00000411423 ZNF682O95780 498 aa16.53■□□□□ 0.24
SF3A1-202ENST00000411423 SERPINA1P01009 418 aa16.53■□□□□ 0.24
SF3A1-202ENST00000411423 PATE4P0C8F1 98 aa16.53■□□□□ 0.24
SF3A1-202ENST00000411423 PGA4P0DJD7 388 aa16.53■□□□□ 0.24
SF3A1-202ENST00000411423 PGA3P0DJD8 388 aa16.53■□□□□ 0.24
Retrieved 100 of 20,778 RNA–protein pairs in 117.8 ms