RNA–Protein interactions for RNA: ENST00000409809.5

COL6A3-206, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 5 BASIC

Gene COL6A3, Length 8,916 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-206ENST00000409809 PODNL1Q6PEZ8 512 aa11.98□□□□□ -0.49
COL6A3-206ENST00000409809 MKXQ8IYA7 352 aa11.98□□□□□ -0.49
COL6A3-206ENST00000409809 SERINC2Q96SA4 455 aa11.98□□□□□ -0.49
COL6A3-206ENST00000409809 DPH7Q9BTV6 452 aa11.98□□□□□ -0.49
COL6A3-206ENST00000409809 INIPQ9NRY2 104 aa11.98□□□□□ -0.49
COL6A3-206ENST00000409809 HIF1ANQ9NWT6 349 aa11.98□□□□□ -0.49
COL6A3-206ENST00000409809 B3GALT5Q9Y2C3 310 aa11.98□□□□□ -0.49
COL6A3-206ENST00000409809 RIPK3Q9Y572 518 aa11.98□□□□□ -0.49
COL6A3-206ENST00000409809 CSNK1G3Q9Y6M4 447 aa11.98□□□□□ -0.49
COL6A3-206ENST00000409809 ANKRD30BLA7E2S9 258 aa11.98□□□□□ -0.49
COL6A3-206ENST00000409809 AIFM1O95831 613 aa11.98□□□□□ -0.49
COL6A3-206ENST00000409809 ECH1Q13011 328 aa11.98□□□□□ -0.49
COL6A3-206ENST00000409809 PRSS58Q8IYP2 241 aa11.98□□□□□ -0.49
COL6A3-206ENST00000409809 LKAAEAR1Q8TD35 194 aa11.98□□□□□ -0.49
COL6A3-206ENST00000409809 SEC11CQ9BY50 192 aa11.98□□□□□ -0.49
COL6A3-206ENST00000409809 DPH1Q9BZG8 443 aa11.98□□□□□ -0.49
COL6A3-206ENST00000409809 PLEKHF2Q9H8W4 249 aa11.98□□□□□ -0.49
COL6A3-206ENST00000409809 RAB27BO00194 218 aa11.98□□□□□ -0.49
COL6A3-206ENST00000409809 RTCAO00442 366 aaKnown RBP11.98□□□□□ -0.49
COL6A3-206ENST00000409809 GPR171O14626 319 aa11.98□□□□□ -0.49
COL6A3-206ENST00000409809 CCNOP22674 350 aa11.98□□□□□ -0.49
COL6A3-206ENST00000409809 EVX1P49640 407 aa11.98□□□□□ -0.49
COL6A3-206ENST00000409809 GDPD3Q7L5L3 318 aa11.98□□□□□ -0.49
COL6A3-206ENST00000409809 CLDN19Q8N6F1 224 aa11.98□□□□□ -0.49
COL6A3-206ENST00000409809 ZNF611Q8N823 705 aa11.98□□□□□ -0.49
COL6A3-206ENST00000409809 HSD17B11Q8NBQ5 300 aa11.98□□□□□ -0.49
COL6A3-206ENST00000409809 OR13C9Q8NGT0 318 aa11.98□□□□□ -0.49
COL6A3-206ENST00000409809 PLEK2Q9NYT0 353 aa11.98□□□□□ -0.49
COL6A3-206ENST00000409809 CLDN1O95832 211 aa11.98□□□□□ -0.49
COL6A3-206ENST00000409809 OR13C7P0DN81 318 aa11.98□□□□□ -0.49
COL6A3-206ENST00000409809 COX5AP20674 150 aa11.98□□□□□ -0.49
COL6A3-206ENST00000409809 TOMM34Q15785 309 aaPredicted RBP11.98□□□□□ -0.49
COL6A3-206ENST00000409809 OR4A16Q8NH70 328 aa11.98□□□□□ -0.49
COL6A3-206ENST00000409809 GHSRQ92847 366 aa11.98□□□□□ -0.49
COL6A3-206ENST00000409809 SLC6A18Q96N87 628 aa11.98□□□□□ -0.49
COL6A3-206ENST00000409809 MED9Q9NWA0 146 aa11.98□□□□□ -0.49
COL6A3-206ENST00000409809 C5P01031 1676 aa11.98□□□□□ -0.49
COL6A3-206ENST00000409809 ZNFX1Q9P2E3 1918 aaKnown RBP11.98□□□□□ -0.49
COL6A3-206ENST00000409809 GABRR3A8MPY1 467 aa11.98□□□□□ -0.49
COL6A3-206ENST00000409809 TRAPPC2LH3BP13 241 aa11.98□□□□□ -0.49
COL6A3-206ENST00000409809 PCSK6P29122 969 aa11.98□□□□□ -0.49
COL6A3-206ENST00000409809 TXNRD3NBQ6F5E7 133 aa11.98□□□□□ -0.49
COL6A3-206ENST00000409809 CGB2Q6NT52 195 aa11.98□□□□□ -0.49
COL6A3-206ENST00000409809 MRPL21Q7Z2W9 205 aaKnown RBP11.98□□□□□ -0.49
COL6A3-206ENST00000409809 LMNTD1Q8N9Z9 388 aa11.98□□□□□ -0.49
COL6A3-206ENST00000409809 LILRB1Q8NHL6 650 aaPredicted RBP11.98□□□□□ -0.49
COL6A3-206ENST00000409809 TUBGCP6Q96RT7 1819 aa11.98□□□□□ -0.49
COL6A3-206ENST00000409809 SIPA1L2Q9P2F8 1722 aaPredicted RBP11.98□□□□□ -0.49
COL6A3-206ENST00000409809 CTSLP07711 333 aa11.97□□□□□ -0.49
COL6A3-206ENST00000409809 OR5H8P0DN80 308 aa11.97□□□□□ -0.49
COL6A3-206ENST00000409809 SDHAP31040 664 aa11.97□□□□□ -0.49
COL6A3-206ENST00000409809 BCL6P41182 706 aa11.97□□□□□ -0.49
COL6A3-206ENST00000409809 RBP2P50120 134 aa11.97□□□□□ -0.49
COL6A3-206ENST00000409809 DCAF7P61962 342 aa11.97□□□□□ -0.49
COL6A3-206ENST00000409809 ELFN2Q5R3F8 820 aa11.97□□□□□ -0.49
COL6A3-206ENST00000409809 Q6ZRG5 221 aa11.97□□□□□ -0.49
COL6A3-206ENST00000409809 PIN1Q13526 163 aaPredicted RBP11.97□□□□□ -0.49
COL6A3-206ENST00000409809 RTL8BQ17RB0 113 aa11.97□□□□□ -0.49
COL6A3-206ENST00000409809 RPL7L1Q6DKI1 246 aaKnown RBP11.97□□□□□ -0.49
COL6A3-206ENST00000409809 NAGSQ8N159 534 aa11.97□□□□□ -0.49
COL6A3-206ENST00000409809 NANOGP1Q8N7R0 232 aa11.97□□□□□ -0.49
COL6A3-206ENST00000409809 Q8N9G6 341 aaPredicted RBP11.97□□□□□ -0.49
COL6A3-206ENST00000409809 PRAMEF27A3QJZ7 478 aa11.97□□□□□ -0.49
COL6A3-206ENST00000409809 GRPRP30550 384 aa11.97□□□□□ -0.49
COL6A3-206ENST00000409809 BPIFB3P59826 476 aa11.97□□□□□ -0.49
COL6A3-206ENST00000409809 AADACL3Q5VUY0 350 aa11.97□□□□□ -0.49
COL6A3-206ENST00000409809 PRAMEF9Q5VWM5 478 aa11.97□□□□□ -0.49
COL6A3-206ENST00000409809 TRAF4Q9BUZ4 470 aaPredicted RBP11.97□□□□□ -0.49
COL6A3-206ENST00000409809 NAA50Q9GZZ1 169 aaKnown RBP11.97□□□□□ -0.49
COL6A3-206ENST00000409809 DUSP21Q9H596 190 aa11.97□□□□□ -0.49
COL6A3-206ENST00000409809 K7ERQ8 282 aa11.97□□□□□ -0.49
COL6A3-206ENST00000409809 KLF8O95600 359 aaPredicted RBP11.97□□□□□ -0.49
COL6A3-206ENST00000409809 HBQ1P09105 142 aa11.97□□□□□ -0.49
COL6A3-206ENST00000409809 APEX1P27695 318 aaKnown RBP11.97□□□□□ -0.49
COL6A3-206ENST00000409809 CCR6P51684 374 aa11.97□□□□□ -0.49
COL6A3-206ENST00000409809 RPS21P63220 83 aaKnown RBP11.97□□□□□ -0.49
COL6A3-206ENST00000409809 DTX3Q8N9I9 347 aa11.97□□□□□ -0.49
COL6A3-206ENST00000409809 SMIM4Q8WVI0 70 aa11.97□□□□□ -0.49
COL6A3-206ENST00000409809 NDRG1Q92597 394 aaKnown RBP11.97□□□□□ -0.49
COL6A3-206ENST00000409809 ZNF516Q92618 1163 aa11.97□□□□□ -0.49
COL6A3-206ENST00000409809 PIGQQ9BRB3 760 aa11.97□□□□□ -0.49
COL6A3-206ENST00000409809 SLCO1B1Q9Y6L6 691 aa11.97□□□□□ -0.49
COL6A3-206ENST00000409809 RTTNQ86VV8 2226 aa11.97□□□□□ -0.49
COL6A3-206ENST00000409809 FABP4P15090 132 aa11.97□□□□□ -0.49
COL6A3-206ENST00000409809 RPA2P15927 270 aa11.97□□□□□ -0.49
COL6A3-206ENST00000409809 TGFBR3Q03167 851 aa11.97□□□□□ -0.49
COL6A3-206ENST00000409809 Q6ZTK2 550 aa11.97□□□□□ -0.49
COL6A3-206ENST00000409809 FAAP24Q9BTP7 215 aa11.97□□□□□ -0.49
COL6A3-206ENST00000409809 CTDSP1Q9GZU7 261 aa11.97□□□□□ -0.49
COL6A3-206ENST00000409809 GIMAP2Q9UG22 337 aa11.97□□□□□ -0.49
COL6A3-206ENST00000409809 NDRG4Q9ULP0 352 aaKnown RBP11.97□□□□□ -0.49
COL6A3-206ENST00000409809 TMEM88Q6PEY1 159 aa11.97□□□□□ -0.49
COL6A3-206ENST00000409809 OR4F5Q8NH21 305 aa11.97□□□□□ -0.49
COL6A3-206ENST00000409809 CREB3L4Q8TEY5 395 aa11.97□□□□□ -0.49
COL6A3-206ENST00000409809 SCMH1Q96GD3 660 aa11.97□□□□□ -0.49
COL6A3-206ENST00000409809 OR4F4Q96R69 305 aa11.97□□□□□ -0.49
COL6A3-206ENST00000409809 A4GALTQ9NPC4 353 aa11.97□□□□□ -0.49
COL6A3-206ENST00000409809 SLC2A4RGQ9NR83 387 aa11.97□□□□□ -0.49
COL6A3-206ENST00000409809 CREBZFQ9NS37 354 aa11.97□□□□□ -0.49
COL6A3-206ENST00000409809 MCRIP1C9JLW8 97 aa11.97□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 45.2 ms