RNA–Protein interactions for RNA: ENST00000395653.9

CLN3-207, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,430 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-207ENST00000395653 TRIM15Q9C019 465 aa19.06■□□□□ 0.64
CLN3-207ENST00000395653 PLEKHF2Q9H8W4 249 aa19.06■□□□□ 0.64
CLN3-207ENST00000395653 CRLF2Q9HC73 371 aa19.06■□□□□ 0.64
CLN3-207ENST00000395653 GPR35Q9HC97 309 aa19.06■□□□□ 0.64
CLN3-207ENST00000395653 B3GAT2Q9NPZ5 323 aa19.06■□□□□ 0.64
CLN3-207ENST00000395653 SLC17A5Q9NRA2 495 aa19.06■□□□□ 0.64
CLN3-207ENST00000395653 AMDHD2Q9Y303 409 aa19.06■□□□□ 0.64
CLN3-207ENST00000395653 SLC25A15Q9Y619 301 aa19.06■□□□□ 0.64
CLN3-207ENST00000395653 A0A1W2PRG6 482 aa19.05■□□□□ 0.64
CLN3-207ENST00000395653 CLOCKO15516 846 aa19.05■□□□□ 0.64
CLN3-207ENST00000395653 F13BP05160 661 aa19.05■□□□□ 0.64
CLN3-207ENST00000395653 HOXC12P31275 282 aa19.05■□□□□ 0.64
CLN3-207ENST00000395653 GPR4P46093 362 aa19.05■□□□□ 0.64
CLN3-207ENST00000395653 ALG10Q5BKT4 473 aa19.05■□□□□ 0.64
CLN3-207ENST00000395653 OAFQ86UD1 273 aa19.05■□□□□ 0.64
CLN3-207ENST00000395653 OR4K5Q8NGD3 323 aa19.05■□□□□ 0.64
CLN3-207ENST00000395653 OR6N1Q8NGY5 312 aa19.05■□□□□ 0.64
CLN3-207ENST00000395653 OR52N5Q8NH56 324 aa19.05■□□□□ 0.64
CLN3-207ENST00000395653 OR52J3Q8NH60 311 aa19.05■□□□□ 0.64
CLN3-207ENST00000395653 SLC25A44Q96H78 314 aaPredicted RBP19.05■□□□□ 0.64
CLN3-207ENST00000395653 ESRP2Q9H6T0 727 aaKnown RBP19.05■□□□□ 0.64
CLN3-207ENST00000395653 KRCC1Q9NPI7 259 aaPredicted RBP19.05■□□□□ 0.64
CLN3-207ENST00000395653 ANKRD17O75179 2603 aaKnown RBP19.05■□□□□ 0.64
CLN3-207ENST00000395653 M0R3G1 203 aa19.04■□□□□ 0.64
CLN3-207ENST00000395653 CDH2P19022 906 aaPredicted RBP19.04■□□□□ 0.64
CLN3-207ENST00000395653 RRM2P31350 389 aa19.04■□□□□ 0.64
CLN3-207ENST00000395653 CSNK1A1P48729 337 aa19.04■□□□□ 0.64
CLN3-207ENST00000395653 DAP3P51398 398 aaKnown RBP19.04■□□□□ 0.64
CLN3-207ENST00000395653 MELKQ14680 651 aa19.04■□□□□ 0.64
CLN3-207ENST00000395653 LAPTM4AQ15012 233 aa19.04■□□□□ 0.64
CLN3-207ENST00000395653 SEC23BQ15437 767 aa19.04■□□□□ 0.64
CLN3-207ENST00000395653 CEACAM16Q2WEN9 425 aa19.04■□□□□ 0.64
CLN3-207ENST00000395653 FAM98BQ52LJ0 330 aaKnown RBP19.04■□□□□ 0.64
CLN3-207ENST00000395653 PHYHD1Q5SRE7 291 aa19.04■□□□□ 0.64
CLN3-207ENST00000395653 NCMAPQ5T1S8 102 aa19.04■□□□□ 0.64
CLN3-207ENST00000395653 ANKRD16Q6P6B7 361 aa19.04■□□□□ 0.64
CLN3-207ENST00000395653 HDDC2Q7Z4H3 204 aa19.04■□□□□ 0.64
CLN3-207ENST00000395653 CDH24Q86UP0 819 aa19.04■□□□□ 0.64
CLN3-207ENST00000395653 MEX3DQ86XN8 651 aaKnown RBP19.04■□□□□ 0.64
CLN3-207ENST00000395653 WDR31Q8NA23 367 aa19.04■□□□□ 0.64
CLN3-207ENST00000395653 ZNF566Q969W8 418 aa19.04■□□□□ 0.64
CLN3-207ENST00000395653 OBP2BQ9NPH6 170 aa19.04■□□□□ 0.64
CLN3-207ENST00000395653 MAGED1Q9Y5V3 778 aaPredicted RBP19.04■□□□□ 0.64
CLN3-207ENST00000395653 SPG11Q96JI7 2443 aa19.03■□□□□ 0.64
CLN3-207ENST00000395653 TRAV27A0A087WT01 109 aa19.03■□□□□ 0.64
CLN3-207ENST00000395653 SH3PXD2BA1X283 911 aa19.03■□□□□ 0.64
CLN3-207ENST00000395653 AQP12BA6NM10 295 aa19.03■□□□□ 0.64
CLN3-207ENST00000395653 MCIDASD6RGH6 385 aa19.03■□□□□ 0.64
CLN3-207ENST00000395653 CDC42EP2O14613 210 aa19.03■□□□□ 0.64
CLN3-207ENST00000395653 GSC2O15499 205 aa19.03■□□□□ 0.64
CLN3-207ENST00000395653 OMPP47874 163 aa19.03■□□□□ 0.64
CLN3-207ENST00000395653 LIMS1P48059 325 aa19.03■□□□□ 0.64
CLN3-207ENST00000395653 CHRNB3Q05901 458 aa19.03■□□□□ 0.64
CLN3-207ENST00000395653 FHL1Q13642 323 aa19.03■□□□□ 0.64
CLN3-207ENST00000395653 TAF11Q15544 211 aa19.03■□□□□ 0.64
CLN3-207ENST00000395653 ACKR1Q16570 336 aa19.03■□□□□ 0.64
CLN3-207ENST00000395653 TBRG1Q3YBR2 411 aa19.03■□□□□ 0.64
CLN3-207ENST00000395653 HIKESHIQ53FT3 197 aa19.03■□□□□ 0.64
CLN3-207ENST00000395653 KLHL24Q6TFL4 600 aa19.03■□□□□ 0.64
CLN3-207ENST00000395653 AQP12AQ8IXF9 295 aa19.03■□□□□ 0.64
CLN3-207ENST00000395653 OR13C2Q8NGS9 318 aa19.03■□□□□ 0.64
CLN3-207ENST00000395653 OR51A7Q8NH64 312 aa19.03■□□□□ 0.64
CLN3-207ENST00000395653 MAGEE2Q8TD90 523 aaPredicted RBP19.03■□□□□ 0.64
CLN3-207ENST00000395653 ASB10Q8WXI3 467 aa19.03■□□□□ 0.64
CLN3-207ENST00000395653 NRGNQ92686 78 aa19.03■□□□□ 0.64
CLN3-207ENST00000395653 TMEM54Q969K7 222 aa19.03■□□□□ 0.64
CLN3-207ENST00000395653 FAM46AQ96IP4 442 aaKnown RBP19.03■□□□□ 0.64
CLN3-207ENST00000395653 TMEM204Q9BSN7 226 aa19.03■□□□□ 0.64
CLN3-207ENST00000395653 CADM1Q9BY67 442 aaKnown RBP19.03■□□□□ 0.64
CLN3-207ENST00000395653 ULBP2Q9BZM5 246 aa19.03■□□□□ 0.64
CLN3-207ENST00000395653 NPAP1Q9NZP6 1156 aa19.03■□□□□ 0.64
CLN3-207ENST00000395653 STX18Q9P2W9 335 aaKnown RBP19.03■□□□□ 0.64
CLN3-207ENST00000395653 A0A1W2PR80 420 aa19.02■□□□□ 0.64
CLN3-207ENST00000395653 ZNF99A8MXY4 864 aaPredicted RBP19.02■□□□□ 0.64
CLN3-207ENST00000395653 CENPBD1B2RD01 187 aa19.02■□□□□ 0.64
CLN3-207ENST00000395653 KRT36O76013 467 aa19.02■□□□□ 0.64
CLN3-207ENST00000395653 PGA4P0DJD7 388 aa19.02■□□□□ 0.64
CLN3-207ENST00000395653 PGA3P0DJD8 388 aa19.02■□□□□ 0.64
CLN3-207ENST00000395653 HOXB1P14653 301 aaPredicted RBP19.02■□□□□ 0.64
CLN3-207ENST00000395653 PRPS1P60891 318 aa19.02■□□□□ 0.64
CLN3-207ENST00000395653 ARF1P84077 181 aaKnown RBP19.02■□□□□ 0.64
CLN3-207ENST00000395653 LRRC75AQ8NAA5 344 aa19.02■□□□□ 0.64
CLN3-207ENST00000395653 BCL2L2Q92843 193 aaPredicted RBP19.02■□□□□ 0.64
CLN3-207ENST00000395653 ZNF837Q96EG3 531 aaPredicted RBP19.02■□□□□ 0.64
CLN3-207ENST00000395653 ALPK1Q96QP1 1244 aa19.02■□□□□ 0.64
CLN3-207ENST00000395653 TNFRSF13CQ96RJ3 184 aa19.02■□□□□ 0.64
CLN3-207ENST00000395653 TXNIPQ9H3M7 391 aa19.02■□□□□ 0.64
CLN3-207ENST00000395653 NELFAQ9H3P2 528 aa19.02■□□□□ 0.64
CLN3-207ENST00000395653 EDARQ9UNE0 448 aa19.02■□□□□ 0.64
CLN3-207ENST00000395653 PRR14LQ5THK1 2151 aa19.02■□□□□ 0.64
CLN3-207ENST00000395653 WNT11O96014 354 aa19.01■□□□□ 0.63
CLN3-207ENST00000395653 IGHG1P01857 330 aa19.01■□□□□ 0.63
CLN3-207ENST00000395653 IGHMP01871 453 aa19.01■□□□□ 0.63
CLN3-207ENST00000395653 RAP2AP10114 183 aa19.01■□□□□ 0.63
CLN3-207ENST00000395653 PAX7P23759 505 aa19.01■□□□□ 0.63
CLN3-207ENST00000395653 FLOT2Q14254 428 aa19.01■□□□□ 0.63
CLN3-207ENST00000395653 ZBED5Q49AG3 693 aa19.01■□□□□ 0.63
CLN3-207ENST00000395653 ARMC4Q5T2S8 1044 aa19.01■□□□□ 0.63
CLN3-207ENST00000395653 GLTPQ9NZD2 209 aa19.01■□□□□ 0.63
CLN3-207ENST00000395653 TMCC3Q9ULS5 477 aa19.01■□□□□ 0.63
Retrieved 100 of 20,778 RNA–protein pairs in 23.2 ms