RNA–Protein interactions for RNA: ENST00000394943.7

LIMA1-202, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 3,669 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-202ENST00000394943 BCL2L2Q92843 193 aaPredicted RBP6.18□□□□□ -1.42
LIMA1-202ENST00000394943 C14orf79Q96F83 325 aa6.18□□□□□ -1.42
LIMA1-202ENST00000394943 FAM46AQ96IP4 442 aaKnown RBP6.18□□□□□ -1.42
LIMA1-202ENST00000394943 OR52D1Q9H346 318 aa6.18□□□□□ -1.42
LIMA1-202ENST00000394943 EXO5Q9H790 373 aa6.18□□□□□ -1.42
LIMA1-202ENST00000394943 NPDC1Q9NQX5 325 aaPredicted RBP6.18□□□□□ -1.42
LIMA1-202ENST00000394943 ZNF224Q9NZL3 707 aa6.18□□□□□ -1.42
LIMA1-202ENST00000394943 TMCC3Q9ULS5 477 aa6.18□□□□□ -1.42
LIMA1-202ENST00000394943 SAMHD1Q9Y3Z3 626 aaKnown RBP6.18□□□□□ -1.42
LIMA1-202ENST00000394943 MCIDASD6RGH6 385 aa6.18□□□□□ -1.42
LIMA1-202ENST00000394943 G3V2T6 193 aa6.18□□□□□ -1.42
LIMA1-202ENST00000394943 LRRTM2O43300 516 aa6.18□□□□□ -1.42
LIMA1-202ENST00000394943 COX5BP10606 129 aa6.18□□□□□ -1.42
LIMA1-202ENST00000394943 MPGP29372 298 aa6.18□□□□□ -1.42
LIMA1-202ENST00000394943 EIF1AXP47813 144 aaKnown RBP6.18□□□□□ -1.42
LIMA1-202ENST00000394943 CDSNQ15517 529 aa6.18□□□□□ -1.42
LIMA1-202ENST00000394943 RNLSQ5VYX0 342 aa6.18□□□□□ -1.42
LIMA1-202ENST00000394943 LPCAT4Q643R3 524 aa6.18□□□□□ -1.42
LIMA1-202ENST00000394943 UEVLDQ8IX04 471 aa6.18□□□□□ -1.42
LIMA1-202ENST00000394943 CDK20Q8IZL9 346 aa6.18□□□□□ -1.42
LIMA1-202ENST00000394943 OR9Q2Q8NGE9 314 aa6.18□□□□□ -1.42
LIMA1-202ENST00000394943 SSC4DQ8WTU2 575 aa6.18□□□□□ -1.42
LIMA1-202ENST00000394943 ZNF385AQ96PM9 386 aaKnown RBP6.18□□□□□ -1.42
LIMA1-202ENST00000394943 TNFRSF13CQ96RJ3 184 aa6.18□□□□□ -1.42
LIMA1-202ENST00000394943 FEVQ99581 238 aa6.18□□□□□ -1.42
LIMA1-202ENST00000394943 POLDIP3Q9BY77 421 aaKnown RBP6.18□□□□□ -1.42
LIMA1-202ENST00000394943 SLCO5A1Q9H2Y9 848 aa6.18□□□□□ -1.42
LIMA1-202ENST00000394943 SLC22A23A1A5C7 686 aa6.18□□□□□ -1.42
LIMA1-202ENST00000394943 TRIM64A6NGJ6 449 aa6.18□□□□□ -1.42
LIMA1-202ENST00000394943 CCL21O00585 134 aa6.18□□□□□ -1.42
LIMA1-202ENST00000394943 TPOP07202 933 aa6.18□□□□□ -1.42
LIMA1-202ENST00000394943 HLA-DOBP13765 273 aa6.18□□□□□ -1.42
LIMA1-202ENST00000394943 CD79BP40259 229 aa6.18□□□□□ -1.42
LIMA1-202ENST00000394943 MRPS34P82930 218 aaKnown RBP6.18□□□□□ -1.42
LIMA1-202ENST00000394943 PMPCAQ10713 525 aa6.18□□□□□ -1.42
LIMA1-202ENST00000394943 GABRA6Q16445 453 aa6.18□□□□□ -1.42
LIMA1-202ENST00000394943 OCLNQ16625 522 aa6.18□□□□□ -1.42
LIMA1-202ENST00000394943 PGGHGQ32M88 737 aa6.18□□□□□ -1.42
LIMA1-202ENST00000394943 ALG10Q5BKT4 473 aa6.18□□□□□ -1.42
LIMA1-202ENST00000394943 PHYHD1Q5SRE7 291 aa6.18□□□□□ -1.42
LIMA1-202ENST00000394943 ZNF585AQ6P3V2 769 aa6.18□□□□□ -1.42
LIMA1-202ENST00000394943 DMRTC2Q8IXT2 367 aaPredicted RBP6.18□□□□□ -1.42
LIMA1-202ENST00000394943 WDR31Q8NA23 367 aa6.18□□□□□ -1.42
LIMA1-202ENST00000394943 AQP11Q8NBQ7 271 aa6.18□□□□□ -1.42
LIMA1-202ENST00000394943 OR13C2Q8NGS9 318 aa6.18□□□□□ -1.42
LIMA1-202ENST00000394943 PLA2G12AQ9BZM1 189 aa6.18□□□□□ -1.42
LIMA1-202ENST00000394943 PAPOLBQ9NRJ5 636 aaKnown RBP6.18□□□□□ -1.42
LIMA1-202ENST00000394943 RHCGQ9UBD6 479 aa6.18□□□□□ -1.42
LIMA1-202ENST00000394943 ZNF346Q9UL40 294 aaKnown RBP6.18□□□□□ -1.42
LIMA1-202ENST00000394943 FKBP7Q9Y680 259 aa6.18□□□□□ -1.42
LIMA1-202ENST00000394943 TEX13CA0A0J9YWL9 993 aa6.17□□□□□ -1.42
LIMA1-202ENST00000394943 DIRAS1O95057 198 aa6.17□□□□□ -1.42
LIMA1-202ENST00000394943 CLDN1O95832 211 aa6.17□□□□□ -1.42
LIMA1-202ENST00000394943 RNF224P0DH78 156 aa6.17□□□□□ -1.42
LIMA1-202ENST00000394943 IGHV1-2P23083 117 aa6.17□□□□□ -1.42
LIMA1-202ENST00000394943 SFTPDP35247 375 aa6.17□□□□□ -1.42
LIMA1-202ENST00000394943 UGT2B10P36537 528 aa6.17□□□□□ -1.42
LIMA1-202ENST00000394943 LSM6P62312 80 aaKnown RBP6.17□□□□□ -1.42
LIMA1-202ENST00000394943 PMS2P3Q13401 168 aa6.17□□□□□ -1.42
LIMA1-202ENST00000394943 LINC01590Q5TEZ4 76 aa6.17□□□□□ -1.42
LIMA1-202ENST00000394943 VWA1Q6PCB0 445 aa6.17□□□□□ -1.42
LIMA1-202ENST00000394943 LRFN4Q6PJG9 635 aa6.17□□□□□ -1.42
LIMA1-202ENST00000394943 SLC35D2Q76EJ3 337 aa6.17□□□□□ -1.42
LIMA1-202ENST00000394943 OAFQ86UD1 273 aa6.17□□□□□ -1.42
LIMA1-202ENST00000394943 OR5M9Q8NGP3 310 aa6.17□□□□□ -1.42
LIMA1-202ENST00000394943 OR1K1Q8NGR3 316 aa6.17□□□□□ -1.42
LIMA1-202ENST00000394943 GPR35Q9HC97 309 aa6.17□□□□□ -1.42
LIMA1-202ENST00000394943 SLC17A5Q9NRA2 495 aa6.17□□□□□ -1.42
LIMA1-202ENST00000394943 FKBP14Q9NWM8 211 aa6.17□□□□□ -1.42
LIMA1-202ENST00000394943 PRSS37A4D1T9 235 aa6.17□□□□□ -1.42
LIMA1-202ENST00000394943 CCDC182A6NF36 153 aa6.17□□□□□ -1.42
LIMA1-202ENST00000394943 SLC43A1O75387 559 aa6.17□□□□□ -1.42
LIMA1-202ENST00000394943 IGKV3-15P01624 115 aa6.17□□□□□ -1.42
LIMA1-202ENST00000394943 MMP7P09237 267 aaPredicted RBP6.17□□□□□ -1.42
LIMA1-202ENST00000394943 CRISP1P54107 249 aa6.17□□□□□ -1.42
LIMA1-202ENST00000394943 SLC34A1Q06495 639 aa6.17□□□□□ -1.42
LIMA1-202ENST00000394943 ACKR1Q16570 336 aa6.17□□□□□ -1.42
LIMA1-202ENST00000394943 TIMM23BQ5SRD1 257 aa6.17□□□□□ -1.42
LIMA1-202ENST00000394943 SFRP5Q5T4F7 317 aa6.17□□□□□ -1.42
LIMA1-202ENST00000394943 AADACL4Q5VUY2 407 aa6.17□□□□□ -1.42
LIMA1-202ENST00000394943 ANKRD16Q6P6B7 361 aa6.17□□□□□ -1.42
LIMA1-202ENST00000394943 NANOGNBQ7Z5D8 188 aa6.17□□□□□ -1.42
LIMA1-202ENST00000394943 GPR137CQ8N3F9 429 aa6.17□□□□□ -1.42
LIMA1-202ENST00000394943 FANK1Q8TC84 345 aa6.17□□□□□ -1.42
LIMA1-202ENST00000394943 PYDC1Q8WXC3 89 aa6.17□□□□□ -1.42
LIMA1-202ENST00000394943 GLTPQ9NZD2 209 aa6.17□□□□□ -1.42
LIMA1-202ENST00000394943 IL20RAQ9UHF4 553 aa6.17□□□□□ -1.42
LIMA1-202ENST00000394943 PROCRQ9UNN8 238 aa6.17□□□□□ -1.42
LIMA1-202ENST00000394943 MOKQ9UQ07 419 aa6.17□□□□□ -1.42
LIMA1-202ENST00000394943 AMDHD2Q9Y303 409 aa6.17□□□□□ -1.42
LIMA1-202ENST00000394943 J3QW42 95 aa6.17□□□□□ -1.42
LIMA1-202ENST00000394943 DVL2O14641 736 aa6.17□□□□□ -1.42
LIMA1-202ENST00000394943 CST2P09228 141 aa6.17□□□□□ -1.42
LIMA1-202ENST00000394943 NPR2P20594 1047 aa6.17□□□□□ -1.42
LIMA1-202ENST00000394943 AQP2P41181 271 aa6.17□□□□□ -1.42
LIMA1-202ENST00000394943 SLC15A1P46059 708 aa6.17□□□□□ -1.42
LIMA1-202ENST00000394943 ZDHHC13Q8IUH4 622 aa6.17□□□□□ -1.42
LIMA1-202ENST00000394943 CCDC103Q8IW40 242 aa6.17□□□□□ -1.42
LIMA1-202ENST00000394943 KISS1RQ969F8 398 aaPredicted RBP6.17□□□□□ -1.42
LIMA1-202ENST00000394943 DACH2Q96NX9 599 aa6.17□□□□□ -1.42
Retrieved 100 of 20,778 RNA–protein pairs in 40 ms