RNA–Protein interactions for RNA: ENST00000355477.10

CLN3-202, Transcript of CLN3, battenin, humanhuman

TSL 1 (best) BASIC

Gene CLN3, Length 1,173 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-202ENST00000355477 HIVEP2P31629 2446 aa15.99■□□□□ 0.15
CLN3-202ENST00000355477 CHD3Q12873 2000 aaKnown RBP15.99■□□□□ 0.15
CLN3-202ENST00000355477 NME4O00746 187 aa15.99■□□□□ 0.15
CLN3-202ENST00000355477 IGLV1-44P01699 117 aa15.99■□□□□ 0.15
CLN3-202ENST00000355477 CELA3BP08861 270 aa15.99■□□□□ 0.15
CLN3-202ENST00000355477 CECR9P0C854 216 aa15.99■□□□□ 0.15
CLN3-202ENST00000355477 APOBEC3AP31941 199 aaPredicted RBP15.99■□□□□ 0.15
CLN3-202ENST00000355477 BIDP55957 195 aa15.99■□□□□ 0.15
CLN3-202ENST00000355477 SELENOWP63302 87 aa15.99■□□□□ 0.15
CLN3-202ENST00000355477 SLC35D2Q76EJ3 337 aa15.99■□□□□ 0.15
CLN3-202ENST00000355477 POM121Q96HA1 1249 aa15.99■□□□□ 0.15
CLN3-202ENST00000355477 MYLK2Q9H1R3 596 aa15.99■□□□□ 0.15
CLN3-202ENST00000355477 EFCAB1Q9HAE3 211 aa15.99■□□□□ 0.15
CLN3-202ENST00000355477 ZNF229Q9UJW7 825 aa15.99■□□□□ 0.15
CLN3-202ENST00000355477 SONP18583 2426 aaKnown RBP15.99■□□□□ 0.15
CLN3-202ENST00000355477 OR5F1O95221 314 aa15.98■□□□□ 0.15
CLN3-202ENST00000355477 IGKV3-15P01624 115 aa15.98■□□□□ 0.15
CLN3-202ENST00000355477 MT-ND1P03886 318 aa15.98■□□□□ 0.15
CLN3-202ENST00000355477 HIST1H2ABP04908 130 aa15.98■□□□□ 0.15
CLN3-202ENST00000355477 HEXAP06865 529 aa15.98■□□□□ 0.15
CLN3-202ENST00000355477 CBR1P16152 277 aa15.98■□□□□ 0.15
CLN3-202ENST00000355477 FUT4P22083 530 aa15.98■□□□□ 0.15
CLN3-202ENST00000355477 PAX7P23759 505 aa15.98■□□□□ 0.15
CLN3-202ENST00000355477 CALCRP30988 508 aa15.98■□□□□ 0.15
CLN3-202ENST00000355477 SLC7A2P52569 658 aa15.98■□□□□ 0.15
CLN3-202ENST00000355477 NAAAQ02083 359 aa15.98■□□□□ 0.15
CLN3-202ENST00000355477 ETFDHQ16134 617 aa15.98■□□□□ 0.15
CLN3-202ENST00000355477 MST1LQ2TV78 715 aa15.98■□□□□ 0.15
CLN3-202ENST00000355477 C3orf36Q3SXR2 165 aa15.98■□□□□ 0.15
CLN3-202ENST00000355477 DNM1P46Q6ZS02 220 aa15.98■□□□□ 0.15
CLN3-202ENST00000355477 HIST3H2AQ7L7L0 130 aa15.98■□□□□ 0.15
CLN3-202ENST00000355477 ARPINQ7Z6K5 226 aa15.98■□□□□ 0.15
CLN3-202ENST00000355477 FAM169BQ8N8A8 192 aa15.98■□□□□ 0.15
CLN3-202ENST00000355477 OR6N1Q8NGY5 312 aa15.98■□□□□ 0.15
CLN3-202ENST00000355477 HTRA1Q92743 480 aa15.98■□□□□ 0.15
CLN3-202ENST00000355477 HIST1H2ACQ93077 130 aa15.98■□□□□ 0.15
CLN3-202ENST00000355477 HOPXQ9BPY8 73 aaPredicted RBP15.98■□□□□ 0.15
CLN3-202ENST00000355477 KATNB1Q9BVA0 655 aa15.98■□□□□ 0.15
CLN3-202ENST00000355477 POLR2J2Q9GZM3 115 aaKnown RBP15.98■□□□□ 0.15
CLN3-202ENST00000355477 POLR2J3Q9H1A7 115 aaKnown RBP15.98■□□□□ 0.15
CLN3-202ENST00000355477 B3GAT2Q9NPZ5 323 aa15.98■□□□□ 0.15
CLN3-202ENST00000355477 C20orf141Q9NUB4 165 aa15.98■□□□□ 0.15
CLN3-202ENST00000355477 AP3M1Q9Y2T2 418 aa15.98■□□□□ 0.15
CLN3-202ENST00000355477 SNX13Q9Y5W8 968 aa15.98■□□□□ 0.15
CLN3-202ENST00000355477 ABCA2Q9BZC7 2435 aa15.98■□□□□ 0.15
CLN3-202ENST00000355477 JMJD1CQ15652 2540 aa15.97■□□□□ 0.15
CLN3-202ENST00000355477 RNF223E7ERA6 249 aa15.97■□□□□ 0.15
CLN3-202ENST00000355477 BLOC1S5-TXNDC5H3BN57 136 aa15.97■□□□□ 0.15
CLN3-202ENST00000355477 RNF13O43567 381 aa15.97■□□□□ 0.15
CLN3-202ENST00000355477 SSX4O60224 188 aa15.97■□□□□ 0.15
CLN3-202ENST00000355477 CRYAAP02489 173 aa15.97■□□□□ 0.15
CLN3-202ENST00000355477 UMPSP11172 480 aa15.97■□□□□ 0.15
CLN3-202ENST00000355477 FUT1P19526 365 aa15.97■□□□□ 0.15
CLN3-202ENST00000355477 DRD4P21917 467 aa15.97■□□□□ 0.15
CLN3-202ENST00000355477 RBM34P42696 430 aaKnown RBP15.97■□□□□ 0.15
CLN3-202ENST00000355477 GYS2P54840 703 aa15.97■□□□□ 0.15
CLN3-202ENST00000355477 MELKQ14680 651 aa15.97■□□□□ 0.15
CLN3-202ENST00000355477 VTCN1Q7Z7D3 282 aa15.97■□□□□ 0.15
CLN3-202ENST00000355477 MDP1Q86V88 176 aa15.97■□□□□ 0.15
CLN3-202ENST00000355477 MAPK1IP1LQ8NDC0 245 aa15.97■□□□□ 0.15
CLN3-202ENST00000355477 OR6X1Q8NH79 312 aa15.97■□□□□ 0.15
CLN3-202ENST00000355477 TMEM239Q8WW34 195 aa15.97■□□□□ 0.15
CLN3-202ENST00000355477 TMEM54Q969K7 222 aa15.97■□□□□ 0.15
CLN3-202ENST00000355477 HS6ST2Q96MM7 605 aa15.97■□□□□ 0.15
CLN3-202ENST00000355477 ULBP2Q9BZM5 246 aa15.97■□□□□ 0.15
CLN3-202ENST00000355477 FAM107BQ9H098 131 aa15.97■□□□□ 0.15
CLN3-202ENST00000355477 B3GNT2Q9NY97 397 aa15.97■□□□□ 0.15
CLN3-202ENST00000355477 A4GNTQ9UNA3 340 aa15.97■□□□□ 0.15
CLN3-202ENST00000355477 FAM171A2A8MVW0 826 aa15.96■□□□□ 0.15
CLN3-202ENST00000355477 CXCR6O00574 342 aa15.96■□□□□ 0.15
CLN3-202ENST00000355477 OR7A10O76100 309 aa15.96■□□□□ 0.15
CLN3-202ENST00000355477 HLA-HP01893 362 aa15.96■□□□□ 0.15
CLN3-202ENST00000355477 YAP1P46937 504 aaKnown RBP15.96■□□□□ 0.15
CLN3-202ENST00000355477 CAPZA2P47755 286 aa15.96■□□□□ 0.15
CLN3-202ENST00000355477 CSNK1A1P48729 337 aa15.96■□□□□ 0.15
CLN3-202ENST00000355477 GSK3BP49841 420 aa15.96■□□□□ 0.15
CLN3-202ENST00000355477 NUDT2P50583 147 aa15.96■□□□□ 0.15
CLN3-202ENST00000355477 IDH3GP51553 393 aaPredicted RBP15.96■□□□□ 0.15
CLN3-202ENST00000355477 LSM11P83369 360 aaKnown RBP eCLIP15.96■□□□□ 0.15
CLN3-202ENST00000355477 HGFACQ04756 655 aa15.96■□□□□ 0.15
CLN3-202ENST00000355477 SWI5Q1ZZU3 235 aa15.96■□□□□ 0.15
CLN3-202ENST00000355477 LRFN4Q6PJG9 635 aa15.96■□□□□ 0.15
CLN3-202ENST00000355477 HACD2Q6Y1H2 254 aa15.96■□□□□ 0.15
CLN3-202ENST00000355477 ZNF813Q6ZN06 617 aa15.96■□□□□ 0.15
CLN3-202ENST00000355477 ZNF627Q7L945 461 aa15.96■□□□□ 0.15
CLN3-202ENST00000355477 NANOGNBQ7Z5D8 188 aa15.96■□□□□ 0.15
CLN3-202ENST00000355477 SGTBQ96EQ0 304 aa15.96■□□□□ 0.15
CLN3-202ENST00000355477 ADAD1Q96M93 576 aaKnown RBP15.96■□□□□ 0.15
CLN3-202ENST00000355477 KCNS3Q9BQ31 491 aa15.96■□□□□ 0.15
CLN3-202ENST00000355477 NOX3Q9HBY0 568 aa15.96■□□□□ 0.15
CLN3-202ENST00000355477 ZNF224Q9NZL3 707 aa15.96■□□□□ 0.15
CLN3-202ENST00000355477 POFUT2Q9Y2G5 429 aa15.96■□□□□ 0.15
CLN3-202ENST00000355477 SNX3O60493 162 aa15.95■□□□□ 0.14
CLN3-202ENST00000355477 F13BP05160 661 aa15.95■□□□□ 0.14
CLN3-202ENST00000355477 THRBP10828 461 aa15.95■□□□□ 0.14
CLN3-202ENST00000355477 B4GALT1P15291 398 aa15.95■□□□□ 0.14
CLN3-202ENST00000355477 LSP1P33241 339 aa15.95■□□□□ 0.14
CLN3-202ENST00000355477 ARR3P36575 388 aa15.95■□□□□ 0.14
CLN3-202ENST00000355477 RPL18Q07020 188 aaKnown RBP15.95■□□□□ 0.14
CLN3-202ENST00000355477 PIGFQ07326 219 aa15.95■□□□□ 0.14
Retrieved 100 of 20,778 RNA–protein pairs in 32 ms