RNA–Protein interactions for RNA: ENST00000348544.4

VPS39-202, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS39, Length 2,661 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-202ENST00000348544 CD79AP11912 226 aa6.19□□□□□ -1.42
VPS39-202ENST00000348544 RPS4Y1P22090 263 aaKnown RBP6.19□□□□□ -1.42
VPS39-202ENST00000348544 PTAFRP25105 342 aa6.19□□□□□ -1.42
VPS39-202ENST00000348544 GPR1P46091 355 aa6.19□□□□□ -1.42
VPS39-202ENST00000348544 DIO1P49895 249 aa6.19□□□□□ -1.42
VPS39-202ENST00000348544 FKBP1BP68106 108 aa6.19□□□□□ -1.42
VPS39-202ENST00000348544 SLC7A9P82251 487 aa6.19□□□□□ -1.42
VPS39-202ENST00000348544 DHRS2Q13268 280 aa6.19□□□□□ -1.42
VPS39-202ENST00000348544 ARHGAP19Q14CB8 494 aa6.19□□□□□ -1.42
VPS39-202ENST00000348544 OR7A5Q15622 319 aa6.19□□□□□ -1.42
VPS39-202ENST00000348544 MST1LQ2TV78 715 aa6.19□□□□□ -1.42
VPS39-202ENST00000348544 ARHGAP11BQ3KRB8 267 aa6.19□□□□□ -1.42
VPS39-202ENST00000348544 FNDC3BQ53EP0 1204 aaKnown RBP6.19□□□□□ -1.42
VPS39-202ENST00000348544 EIPR1Q53HC9 387 aa6.19□□□□□ -1.42
VPS39-202ENST00000348544 ATPAF1Q5TC12 328 aaPredicted RBP6.19□□□□□ -1.42
VPS39-202ENST00000348544 ANKRD16Q6P6B7 361 aa6.19□□□□□ -1.42
VPS39-202ENST00000348544 MISPQ8IVT2 679 aa6.19□□□□□ -1.42
VPS39-202ENST00000348544 CDK20Q8IZL9 346 aa6.19□□□□□ -1.42
VPS39-202ENST00000348544 GALNT16Q8N428 558 aa6.19□□□□□ -1.42
VPS39-202ENST00000348544 PAQR4Q8N4S7 273 aaPredicted RBP6.19□□□□□ -1.42
VPS39-202ENST00000348544 OR10AC1Q8NH08 325 aa6.19□□□□□ -1.42
VPS39-202ENST00000348544 SOCS4Q8WXH5 440 aa6.19□□□□□ -1.42
VPS39-202ENST00000348544 HSPA12BQ96MM6 686 aa6.19□□□□□ -1.42
VPS39-202ENST00000348544 NKX3-1Q99801 234 aaPredicted RBP6.19□□□□□ -1.42
VPS39-202ENST00000348544 RNF122Q9H9V4 155 aa6.19□□□□□ -1.42
VPS39-202ENST00000348544 MRPS30Q9NP92 439 aaKnown RBP6.19□□□□□ -1.42
VPS39-202ENST00000348544 TMEM100Q9NV29 134 aa6.19□□□□□ -1.42
VPS39-202ENST00000348544 TAS2R8Q9NYW2 309 aa6.19□□□□□ -1.42
VPS39-202ENST00000348544 FLRT3Q9NZU0 649 aa6.19□□□□□ -1.42
VPS39-202ENST00000348544 MIOXQ9UGB7 285 aa6.19□□□□□ -1.42
VPS39-202ENST00000348544 IL36AQ9UHA7 158 aa6.19□□□□□ -1.42
VPS39-202ENST00000348544 PCOLCE2Q9UKZ9 415 aa6.19□□□□□ -1.42
VPS39-202ENST00000348544 KLHDC2Q9Y2U9 406 aa6.19□□□□□ -1.42
VPS39-202ENST00000348544 FAM96BQ9Y3D0 163 aa6.19□□□□□ -1.42
VPS39-202ENST00000348544 TICRRQ7Z2Z1 1910 aa6.19□□□□□ -1.42
VPS39-202ENST00000348544 LAMA3Q16787 3333 aa6.19□□□□□ -1.42
VPS39-202ENST00000348544 PDE4DIPQ5VU43 2346 aa6.19□□□□□ -1.42
VPS39-202ENST00000348544 C4orf47A7E2U8 309 aa6.19□□□□□ -1.42
VPS39-202ENST00000348544 MCIDASD6RGH6 385 aa6.19□□□□□ -1.42
VPS39-202ENST00000348544 M0QYG6 137 aa6.19□□□□□ -1.42
VPS39-202ENST00000348544 UBE2CO00762 179 aa6.19□□□□□ -1.42
VPS39-202ENST00000348544 RAD1O60671 282 aa6.19□□□□□ -1.42
VPS39-202ENST00000348544 TMEM127O75204 238 aa6.19□□□□□ -1.42
VPS39-202ENST00000348544 ALOX12BO75342 701 aa6.19□□□□□ -1.42
VPS39-202ENST00000348544 RPP14O95059 124 aaKnown RBP6.19□□□□□ -1.42
VPS39-202ENST00000348544 WNT11O96014 354 aa6.19□□□□□ -1.42
VPS39-202ENST00000348544 S100A8P05109 93 aa6.19□□□□□ -1.42
VPS39-202ENST00000348544 THBS1P07996 1170 aa6.19□□□□□ -1.42
VPS39-202ENST00000348544 OR8G3PP0DMU2 310 aa6.19□□□□□ -1.42
VPS39-202ENST00000348544 LIPCP11150 499 aa6.19□□□□□ -1.42
VPS39-202ENST00000348544 LAMP2P13473 410 aa6.19□□□□□ -1.42
VPS39-202ENST00000348544 FOLR2P14207 255 aa6.19□□□□□ -1.42
VPS39-202ENST00000348544 EPCAMP16422 314 aa6.19□□□□□ -1.42
VPS39-202ENST00000348544 SPI1P17947 270 aa6.19□□□□□ -1.42
VPS39-202ENST00000348544 AK4P27144 223 aaPredicted RBP6.19□□□□□ -1.42
VPS39-202ENST00000348544 SLC6A6P31641 620 aa6.19□□□□□ -1.42
VPS39-202ENST00000348544 CAPZA1P52907 286 aa6.19□□□□□ -1.42
VPS39-202ENST00000348544 EPHB3P54753 998 aa6.19□□□□□ -1.42
VPS39-202ENST00000348544 TAF1CQ15572 869 aaPredicted RBP6.19□□□□□ -1.42
VPS39-202ENST00000348544 INPP5JQ15735 1006 aaPredicted RBP6.19□□□□□ -1.42
VPS39-202ENST00000348544 Q499Y3 187 aa6.19□□□□□ -1.42
VPS39-202ENST00000348544 TMEM35AQ53FP2 167 aa6.19□□□□□ -1.42
VPS39-202ENST00000348544 PRRT3Q5FWE3 981 aa6.19□□□□□ -1.42
VPS39-202ENST00000348544 VWA2Q5GFL6 755 aa6.19□□□□□ -1.42
VPS39-202ENST00000348544 ZCCHC12Q6PEW1 402 aa6.19□□□□□ -1.42
VPS39-202ENST00000348544 ENPP7Q6UWV6 458 aa6.19□□□□□ -1.42
VPS39-202ENST00000348544 C17orf99Q6UX52 265 aa6.19□□□□□ -1.42
VPS39-202ENST00000348544 NDUFAF7Q7L592 441 aa6.19□□□□□ -1.42
VPS39-202ENST00000348544 C12orf40Q86WS4 652 aa6.19□□□□□ -1.42
VPS39-202ENST00000348544 TMEM151BQ8IW70 566 aa6.19□□□□□ -1.42
VPS39-202ENST00000348544 SKA3Q8IX90 412 aa6.19□□□□□ -1.42
VPS39-202ENST00000348544 SLC35F3Q8IY50 421 aa6.19□□□□□ -1.42
VPS39-202ENST00000348544 GABRG1Q8N1C3 465 aa6.19□□□□□ -1.42
VPS39-202ENST00000348544 OR51D1Q8NGF3 324 aa6.19□□□□□ -1.42
VPS39-202ENST00000348544 OR5AP2Q8NGF4 316 aa6.19□□□□□ -1.42
VPS39-202ENST00000348544 OR1J4Q8NGS1 313 aa6.19□□□□□ -1.42
VPS39-202ENST00000348544 OR2A1Q8NGT9 310 aa6.19□□□□□ -1.42
VPS39-202ENST00000348544 TCEAL3Q969E4 200 aa6.19□□□□□ -1.42
VPS39-202ENST00000348544 NMNAT3Q96T66 252 aa6.19□□□□□ -1.42
VPS39-202ENST00000348544 SEC11CQ9BY50 192 aa6.19□□□□□ -1.42
VPS39-202ENST00000348544 ZNF350Q9GZX5 532 aa6.19□□□□□ -1.42
VPS39-202ENST00000348544 OR51M1Q9H341 326 aa6.19□□□□□ -1.42
VPS39-202ENST00000348544 XKR8Q9H6D3 395 aa6.19□□□□□ -1.42
VPS39-202ENST00000348544 UQCC1Q9NVA1 299 aa6.19□□□□□ -1.42
VPS39-202ENST00000348544 IER3IP1Q9Y5U9 82 aa6.19□□□□□ -1.42
VPS39-202ENST00000348544 SNRNP200O75643 2136 aaKnown RBP6.19□□□□□ -1.42
VPS39-202ENST00000348544 THSD7BQ9C0I4 1608 aa6.19□□□□□ -1.42
VPS39-202ENST00000348544 NUP210LQ5VU65 1888 aa6.18□□□□□ -1.42
VPS39-202ENST00000348544 COL4A6Q14031 1691 aa6.18□□□□□ -1.42
VPS39-202ENST00000348544 TRBV5-5A0A0J9YX44 114 aa6.18□□□□□ -1.42
VPS39-202ENST00000348544 C2orf72A6NCS6 295 aa6.18□□□□□ -1.42
VPS39-202ENST00000348544 DUXAA6NLW8 204 aa6.18□□□□□ -1.42
VPS39-202ENST00000348544 FAM171A2A8MVW0 826 aa6.18□□□□□ -1.42
VPS39-202ENST00000348544 GNB5O14775 395 aa6.18□□□□□ -1.42
VPS39-202ENST00000348544 UPK3AO75631 287 aa6.18□□□□□ -1.42
VPS39-202ENST00000348544 NID1P14543 1247 aa6.18□□□□□ -1.42
VPS39-202ENST00000348544 ZNF44P15621 663 aa6.18□□□□□ -1.42
VPS39-202ENST00000348544 NTHL1P78549 312 aa6.18□□□□□ -1.42
VPS39-202ENST00000348544 GAS6Q14393 721 aa6.18□□□□□ -1.42
VPS39-202ENST00000348544 GFOD2Q3B7J2 385 aa6.18□□□□□ -1.42
Retrieved 100 of 20,778 RNA–protein pairs in 30.3 ms