RNA–Protein interactions for RNA: ENST00000341247.8

LIMA1-201, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIMA1, Length 3,706 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-201ENST00000341247 MDGA2Q7Z553 956 aa9.37□□□□□ -0.91
LIMA1-201ENST00000341247 ZNF676Q8N7Q3 588 aa9.37□□□□□ -0.91
LIMA1-201ENST00000341247 STT3BQ8TCJ2 826 aa9.37□□□□□ -0.91
LIMA1-201ENST00000341247 C8orf44Q96CB5 159 aa9.37□□□□□ -0.91
LIMA1-201ENST00000341247 KCTD12Q96CX2 325 aaKnown RBP9.37□□□□□ -0.91
LIMA1-201ENST00000341247 SLC19A3Q9BZV2 496 aa9.37□□□□□ -0.91
LIMA1-201ENST00000341247 OR2B2Q9GZK3 357 aa9.37□□□□□ -0.91
LIMA1-201ENST00000341247 LAT2Q9GZY6 243 aa9.37□□□□□ -0.91
LIMA1-201ENST00000341247 FRRS1LQ9P0K9 344 aa9.37□□□□□ -0.91
LIMA1-201ENST00000341247 CACNA1EQ15878 2313 aa9.37□□□□□ -0.91
LIMA1-201ENST00000341247 SDK2Q58EX2 2172 aa9.37□□□□□ -0.91
LIMA1-201ENST00000341247 H0YC42 278 aa9.36□□□□□ -0.91
LIMA1-201ENST00000341247 NUDT21O43809 227 aaKnown RBP9.36□□□□□ -0.91
LIMA1-201ENST00000341247 SLC16A7O60669 478 aa9.36□□□□□ -0.91
LIMA1-201ENST00000341247 RENP00797 406 aa9.36□□□□□ -0.91
LIMA1-201ENST00000341247 GAAP10253 952 aa9.36□□□□□ -0.91
LIMA1-201ENST00000341247 GLB1P16278 677 aa9.36□□□□□ -0.91
LIMA1-201ENST00000341247 FAAP20Q6NZ36 180 aa9.36□□□□□ -0.91
LIMA1-201ENST00000341247 SLITRK4Q8IW52 837 aa9.36□□□□□ -0.91
LIMA1-201ENST00000341247 D2HGDHQ8N465 521 aa9.36□□□□□ -0.91
LIMA1-201ENST00000341247 DUSP18Q8NEJ0 188 aa9.36□□□□□ -0.91
LIMA1-201ENST00000341247 OR2I1PQ8NGU4 316 aa9.36□□□□□ -0.91
LIMA1-201ENST00000341247 OR5AK2Q8NH90 309 aa9.36□□□□□ -0.91
LIMA1-201ENST00000341247 LIN7BQ9HAP6 207 aa9.36□□□□□ -0.91
LIMA1-201ENST00000341247 TCF7L1Q9HCS4 588 aa9.36□□□□□ -0.91
LIMA1-201ENST00000341247 TAS2R5Q9NYW4 299 aa9.36□□□□□ -0.91
LIMA1-201ENST00000341247 NPFFR2Q9Y5X5 522 aa9.36□□□□□ -0.91
LIMA1-201ENST00000341247 RTTNQ86VV8 2226 aa9.36□□□□□ -0.91
LIMA1-201ENST00000341247 TMED7-TICAM2A0A0A6YYA0 188 aa9.36□□□□□ -0.91
LIMA1-201ENST00000341247 TSC22D2O75157 780 aa9.36□□□□□ -0.91
LIMA1-201ENST00000341247 OR6A2O95222 327 aa9.36□□□□□ -0.91
LIMA1-201ENST00000341247 MPZL1O95297 269 aa9.36□□□□□ -0.91
LIMA1-201ENST00000341247 SPARCP09486 303 aa9.36□□□□□ -0.91
LIMA1-201ENST00000341247 ANKRD34CP0C6C1 535 aa9.36□□□□□ -0.91
LIMA1-201ENST00000341247 HLA-DOBP13765 273 aa9.36□□□□□ -0.91
LIMA1-201ENST00000341247 CD53P19397 219 aa9.36□□□□□ -0.91
LIMA1-201ENST00000341247 UQCRC1P31930 480 aa9.36□□□□□ -0.91
LIMA1-201ENST00000341247 ACKR1Q16570 336 aa9.36□□□□□ -0.91
LIMA1-201ENST00000341247 SLC35D3Q5M8T2 416 aa9.36□□□□□ -0.91
LIMA1-201ENST00000341247 FAM205BPQ63HN1 556 aa9.36□□□□□ -0.91
LIMA1-201ENST00000341247 GUSBP11Q6P575 273 aa9.36□□□□□ -0.91
LIMA1-201ENST00000341247 SLC16A9Q7RTY1 509 aa9.36□□□□□ -0.91
LIMA1-201ENST00000341247 OR1N1Q8NGS0 311 aa9.36□□□□□ -0.91
LIMA1-201ENST00000341247 OR2T4Q8NH00 348 aa9.36□□□□□ -0.91
LIMA1-201ENST00000341247 YIPF5Q969M3 257 aa9.36□□□□□ -0.91
LIMA1-201ENST00000341247 ZNF501Q96CX3 271 aaPredicted RBP9.36□□□□□ -0.91
LIMA1-201ENST00000341247 OR6C1Q96RD1 312 aa9.36□□□□□ -0.91
LIMA1-201ENST00000341247 UBL7Q96S82 380 aaPredicted RBP9.36□□□□□ -0.91
LIMA1-201ENST00000341247 KCNK15Q9H427 330 aa9.36□□□□□ -0.91
LIMA1-201ENST00000341247 SLC22A11Q9NSA0 550 aa9.36□□□□□ -0.91
LIMA1-201ENST00000341247 TMED7Q9Y3B3 224 aa9.36□□□□□ -0.91
LIMA1-201ENST00000341247 A0A0A6YYJ9 748 aa9.36□□□□□ -0.91
LIMA1-201ENST00000341247 AKR7A2O43488 359 aa9.36□□□□□ -0.91
LIMA1-201ENST00000341247 GIMD1P0DJR0 217 aa9.36□□□□□ -0.91
LIMA1-201ENST00000341247 RPS15P62841 145 aaKnown RBP9.36□□□□□ -0.91
LIMA1-201ENST00000341247 PLA2G7Q13093 441 aa9.36□□□□□ -0.91
LIMA1-201ENST00000341247 SLC36A2Q495M3 483 aa9.36□□□□□ -0.91
LIMA1-201ENST00000341247 TMPRSS12Q86WS5 348 aa9.36□□□□□ -0.91
LIMA1-201ENST00000341247 TIGD4Q8IY51 512 aa9.36□□□□□ -0.91
LIMA1-201ENST00000341247 MARVELD1Q9BSK0 173 aa9.36□□□□□ -0.91
LIMA1-201ENST00000341247 SLCO1C1Q9NYB5 712 aa9.36□□□□□ -0.91
LIMA1-201ENST00000341247 ZNF222Q9UK12 451 aa9.36□□□□□ -0.91
LIMA1-201ENST00000341247 TRAV1-2A0A0B4J238 106 aa9.35□□□□□ -0.91
LIMA1-201ENST00000341247 H3BML4 177 aa9.35□□□□□ -0.91
LIMA1-201ENST00000341247 TSPAN2O60636 221 aa9.35□□□□□ -0.91
LIMA1-201ENST00000341247 GUSBP08236 651 aa9.35□□□□□ -0.91
LIMA1-201ENST00000341247 PGCP20142 388 aa9.35□□□□□ -0.91
LIMA1-201ENST00000341247 SLC6A1P30531 599 aa9.35□□□□□ -0.91
LIMA1-201ENST00000341247 BTCP35070 178 aa9.35□□□□□ -0.91
LIMA1-201ENST00000341247 EFR3AQ14156 821 aa9.35□□□□□ -0.91
LIMA1-201ENST00000341247 FCN2Q15485 313 aa9.35□□□□□ -0.91
LIMA1-201ENST00000341247 COL28A1Q2UY09 1125 aa9.35□□□□□ -0.91
LIMA1-201ENST00000341247 ZNF417Q8TAU3 575 aa9.35□□□□□ -0.91
LIMA1-201ENST00000341247 RNF166Q96A37 237 aaPredicted RBP9.35□□□□□ -0.91
LIMA1-201ENST00000341247 GPX7Q96SL4 187 aaPredicted RBP9.35□□□□□ -0.91
LIMA1-201ENST00000341247 ZNF587Q96SQ5 575 aaPredicted RBP9.35□□□□□ -0.91
LIMA1-201ENST00000341247 ADAM19Q9H013 955 aa9.35□□□□□ -0.91
LIMA1-201ENST00000341247 TMEM185BQ9H7F4 350 aa9.35□□□□□ -0.91
LIMA1-201ENST00000341247 ANKRD10Q9NXR5 420 aa9.35□□□□□ -0.91
LIMA1-201ENST00000341247 MED11Q9P086 117 aa9.35□□□□□ -0.91
LIMA1-201ENST00000341247 SLC22A13Q9Y226 551 aa9.35□□□□□ -0.91
LIMA1-201ENST00000341247 ZNF593O00488 134 aaPredicted RBP9.35□□□□□ -0.91
LIMA1-201ENST00000341247 UPK3AO75631 287 aa9.35□□□□□ -0.91
LIMA1-201ENST00000341247 YES1P07947 543 aa9.35□□□□□ -0.91
LIMA1-201ENST00000341247 TMIGD3P0DMS9 266 aaPredicted RBP9.35□□□□□ -0.91
LIMA1-201ENST00000341247 ADH7P40394 386 aa9.35□□□□□ -0.91
LIMA1-201ENST00000341247 CXCL12P48061 93 aa9.35□□□□□ -0.91
LIMA1-201ENST00000341247 EPHA4P54764 986 aa9.35□□□□□ -0.91
LIMA1-201ENST00000341247 ALKBH1Q13686 389 aaKnown RBP9.35□□□□□ -0.91
LIMA1-201ENST00000341247 ZNF574Q6ZN55 896 aaPredicted RBP9.35□□□□□ -0.91
LIMA1-201ENST00000341247 SLC43A2Q8N370 569 aa9.35□□□□□ -0.91
LIMA1-201ENST00000341247 ASCC1Q8N9N2 400 aaKnown RBP9.35□□□□□ -0.91
LIMA1-201ENST00000341247 MRPL48Q96GC5 212 aaKnown RBP9.35□□□□□ -0.91
LIMA1-201ENST00000341247 INTS14Q96SY0 518 aa9.35□□□□□ -0.91
LIMA1-201ENST00000341247 CACNG6Q9BXT2 260 aa9.35□□□□□ -0.91
LIMA1-201ENST00000341247 FLVCR2Q9UPI3 526 aa9.35□□□□□ -0.91
LIMA1-201ENST00000341247 TRAV8-7A0A075B6U6 113 aa9.35□□□□□ -0.91
LIMA1-201ENST00000341247 IFITM5A6NNB3 132 aa9.35□□□□□ -0.91
LIMA1-201ENST00000341247 BGLAPP02818 100 aa9.35□□□□□ -0.91
LIMA1-201ENST00000341247 POU3F3P20264 500 aaPredicted RBP9.35□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 53.1 ms