RNA–Protein interactions for RNA: ENST00000323668.11

TCOF1-201, Transcript of treacle ribosome biogenesis factor 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene TCOF1, Length 4,832 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-201ENST00000323668 ORAI1Q96D31 301 aa13.52□□□□□ -0.25
TCOF1-201ENST00000323668 ZC3HAV1LQ96H79 300 aaKnown RBP13.52□□□□□ -0.25
TCOF1-201ENST00000323668 CDC6Q99741 560 aa13.52□□□□□ -0.25
TCOF1-201ENST00000323668 ZNF700Q9H0M5 742 aa13.52□□□□□ -0.25
TCOF1-201ENST00000323668 SLCO5A1Q9H2Y9 848 aa13.52□□□□□ -0.25
TCOF1-201ENST00000323668 SEMA6CQ9H3T2 930 aa13.52□□□□□ -0.25
TCOF1-201ENST00000323668 ACAD8Q9UKU7 415 aa13.52□□□□□ -0.25
TCOF1-201ENST00000323668 SLC17A4Q9Y2C5 497 aa13.52□□□□□ -0.25
TCOF1-201ENST00000323668 TPT1P13693 172 aaKnown RBP13.52□□□□□ -0.25
TCOF1-201ENST00000323668 DCAF7P61962 342 aa13.52□□□□□ -0.25
TCOF1-201ENST00000323668 DDIT4LQ96D03 193 aa13.52□□□□□ -0.25
TCOF1-201ENST00000323668 SENP5Q96HI0 755 aaPredicted RBP13.52□□□□□ -0.25
TCOF1-201ENST00000323668 ELF4Q99607 663 aaPredicted RBP13.52□□□□□ -0.25
TCOF1-201ENST00000323668 SDHAF2Q9NX18 166 aa13.52□□□□□ -0.25
TCOF1-201ENST00000323668 LRIT1Q9P2V4 623 aa13.52□□□□□ -0.25
TCOF1-201ENST00000323668 KLK11Q9UBX7 282 aa13.52□□□□□ -0.25
TCOF1-201ENST00000323668 LOC100289279A0A1B0GTE1 492 aa13.51□□□□□ -0.25
TCOF1-201ENST00000323668 FARS2O95363 451 aaKnown RBP13.51□□□□□ -0.25
TCOF1-201ENST00000323668 UTS2O95399 124 aa13.51□□□□□ -0.25
TCOF1-201ENST00000323668 GPNMBQ14956 572 aa13.51□□□□□ -0.25
TCOF1-201ENST00000323668 OR7A5Q15622 319 aa13.51□□□□□ -0.25
TCOF1-201ENST00000323668 GLYATL3Q5SZD4 288 aa13.51□□□□□ -0.25
TCOF1-201ENST00000323668 PXDC1Q5TGL8 231 aa13.51□□□□□ -0.25
TCOF1-201ENST00000323668 FCRL6Q6DN72 434 aa13.51□□□□□ -0.25
TCOF1-201ENST00000323668 TMUB2Q71RG4 321 aa13.51□□□□□ -0.25
TCOF1-201ENST00000323668 NAXEQ8NCW5 288 aa13.51□□□□□ -0.25
TCOF1-201ENST00000323668 OR5L2Q8NGL0 311 aa13.51□□□□□ -0.25
TCOF1-201ENST00000323668 SLC37A2Q8TED4 501 aa13.51□□□□□ -0.25
TCOF1-201ENST00000323668 COX14Q96I36 57 aa13.51□□□□□ -0.25
TCOF1-201ENST00000323668 SORCS2Q96PQ0 1159 aa13.51□□□□□ -0.25
TCOF1-201ENST00000323668 DEFB126Q9BYW3 111 aa13.51□□□□□ -0.25
TCOF1-201ENST00000323668 RNF32Q9H0A6 362 aa13.51□□□□□ -0.25
TCOF1-201ENST00000323668 VDAC3Q9Y277 283 aa13.51□□□□□ -0.25
TCOF1-201ENST00000323668 PMS2P2O95744 297 aa13.51□□□□□ -0.25
TCOF1-201ENST00000323668 OR1D4P47884 311 aa13.51□□□□□ -0.25
TCOF1-201ENST00000323668 LIMS1P48059 325 aa13.51□□□□□ -0.25
TCOF1-201ENST00000323668 CSNK2A1P68400 391 aaPredicted RBP13.51□□□□□ -0.25
TCOF1-201ENST00000323668 ARL6IP1Q15041 203 aa13.51□□□□□ -0.25
TCOF1-201ENST00000323668 C1QTNF12Q5T7M4 302 aa13.51□□□□□ -0.25
TCOF1-201ENST00000323668 UBE3DQ7Z6J8 389 aa13.51□□□□□ -0.25
TCOF1-201ENST00000323668 CSNK2A3Q8NEV1 391 aa13.51□□□□□ -0.25
TCOF1-201ENST00000323668 GCDHQ92947 438 aaPredicted RBP13.51□□□□□ -0.25
TCOF1-201ENST00000323668 TOE1Q96GM8 510 aaKnown RBP13.51□□□□□ -0.25
TCOF1-201ENST00000323668 FAM71F1Q96KD3 344 aaPredicted RBP13.51□□□□□ -0.25
TCOF1-201ENST00000323668 TSSK2Q96PF2 358 aa13.51□□□□□ -0.25
TCOF1-201ENST00000323668 HIST1H2AAQ96QV6 131 aa13.51□□□□□ -0.25
TCOF1-201ENST00000323668 ARID1AO14497 2285 aa13.51□□□□□ -0.25
TCOF1-201ENST00000323668 PLXNA1Q9UIW2 1896 aa13.51□□□□□ -0.25
TCOF1-201ENST00000323668 HCRTR1O43613 425 aa13.51□□□□□ -0.25
TCOF1-201ENST00000323668 RAG2P55895 527 aa13.51□□□□□ -0.25
TCOF1-201ENST00000323668 TSC22D1Q15714 1073 aa13.51□□□□□ -0.25
TCOF1-201ENST00000323668 FAAP20Q6NZ36 180 aa13.51□□□□□ -0.25
TCOF1-201ENST00000323668 FAM122CQ6P4D5 195 aa13.51□□□□□ -0.25
TCOF1-201ENST00000323668 FBXO46Q6PJ61 603 aaPredicted RBP13.51□□□□□ -0.25
TCOF1-201ENST00000323668 PLPP7Q8NBV4 271 aa13.51□□□□□ -0.25
TCOF1-201ENST00000323668 TSPAN10Q9H1Z9 355 aaPredicted RBP13.51□□□□□ -0.25
TCOF1-201ENST00000323668 ZMAT3Q9HA38 289 aaKnown RBP13.51□□□□□ -0.25
TCOF1-201ENST00000323668 MRPS18AQ9NVS2 196 aaKnown RBP13.51□□□□□ -0.25
TCOF1-201ENST00000323668 H7C417 338 aa13.51□□□□□ -0.25
TCOF1-201ENST00000323668 APOC1P02654 83 aa13.51□□□□□ -0.25
TCOF1-201ENST00000323668 MAOAP21397 527 aa13.51□□□□□ -0.25
TCOF1-201ENST00000323668 HERV-K104P61576 105 aa13.51□□□□□ -0.25
TCOF1-201ENST00000323668 UEVLDQ8IX04 471 aa13.51□□□□□ -0.25
TCOF1-201ENST00000323668 BAHD1Q8TBE0 780 aaPredicted RBP13.51□□□□□ -0.25
TCOF1-201ENST00000323668 PATE1Q8WXA2 126 aa13.51□□□□□ -0.25
TCOF1-201ENST00000323668 PELI1Q96FA3 418 aa13.51□□□□□ -0.25
TCOF1-201ENST00000323668 CNTNAP3BQ96NU0 1288 aa13.51□□□□□ -0.25
TCOF1-201ENST00000323668 B3GAT2Q9NPZ5 323 aa13.51□□□□□ -0.25
TCOF1-201ENST00000323668 TRAV36DV7A0A075B6V5 113 aa13.5□□□□□ -0.25
TCOF1-201ENST00000323668 PRAMEF25A6NGN4 478 aa13.5□□□□□ -0.25
TCOF1-201ENST00000323668 HOXB3P14651 431 aaPredicted RBP13.5□□□□□ -0.25
TCOF1-201ENST00000323668 POU3F3P20264 500 aaPredicted RBP13.5□□□□□ -0.25
TCOF1-201ENST00000323668 HSD11B2P80365 405 aa13.5□□□□□ -0.25
TCOF1-201ENST00000323668 SIGIRRQ6IA17 410 aa13.5□□□□□ -0.25
TCOF1-201ENST00000323668 ZNF585AQ6P3V2 769 aa13.5□□□□□ -0.25
TCOF1-201ENST00000323668 KIRREL2Q6UWL6 708 aa13.5□□□□□ -0.25
TCOF1-201ENST00000323668 STX12Q86Y82 276 aa13.5□□□□□ -0.25
TCOF1-201ENST00000323668 C17orf47Q8NEP4 570 aa13.5□□□□□ -0.25
TCOF1-201ENST00000323668 LCORQ96JN0 433 aaPredicted RBP13.5□□□□□ -0.25
TCOF1-201ENST00000323668 LPAR4Q99677 370 aa13.5□□□□□ -0.25
TCOF1-201ENST00000323668 TPSD1Q9BZJ3 242 aa13.5□□□□□ -0.25
TCOF1-201ENST00000323668 E9PI62 339 aa13.5□□□□□ -0.25
TCOF1-201ENST00000323668 TP53I11O14683 189 aa13.5□□□□□ -0.25
TCOF1-201ENST00000323668 CRTAPO75718 401 aaPredicted RBP13.5□□□□□ -0.25
TCOF1-201ENST00000323668 PRKACAP17612 351 aa13.5□□□□□ -0.25
TCOF1-201ENST00000323668 ITGB8P26012 769 aa13.5□□□□□ -0.25
TCOF1-201ENST00000323668 EMP2P54851 167 aa13.5□□□□□ -0.25
TCOF1-201ENST00000323668 THSD4Q6ZMP0 1018 aa13.5□□□□□ -0.25
TCOF1-201ENST00000323668 RCBTB1Q8NDN9 531 aa13.5□□□□□ -0.25
TCOF1-201ENST00000323668 MAP6Q96JE9 813 aa13.5□□□□□ -0.25
TCOF1-201ENST00000323668 SLC46A1Q96NT5 459 aa13.5□□□□□ -0.25
TCOF1-201ENST00000323668 SNRPGP15A8MWD9 76 aa13.5□□□□□ -0.25
TCOF1-201ENST00000323668 M0QYG6 137 aa13.5□□□□□ -0.25
TCOF1-201ENST00000323668 ZNF43P17038 809 aa13.5□□□□□ -0.25
TCOF1-201ENST00000323668 DCTDP32321 178 aa13.5□□□□□ -0.25
TCOF1-201ENST00000323668 MRPS21P82921 87 aaKnown RBP13.5□□□□□ -0.25
TCOF1-201ENST00000323668 OR5M10Q6IEU7 315 aa13.5□□□□□ -0.25
TCOF1-201ENST00000323668 STAC2Q6ZMT1 411 aa13.5□□□□□ -0.25
TCOF1-201ENST00000323668 OR5T2Q8NGG2 359 aa13.5□□□□□ -0.25
TCOF1-201ENST00000323668 OR6M1Q8NGM8 313 aa13.5□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 63.7 ms