RNA–Protein interactions for RNA: ENST00000309546.7

LIME1-201, Transcript of Lck interacting transmembrane adaptor 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIME1, Length 1,178 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1-201ENST00000309546 HGFACQ04756 655 aa16.93■□□□□ 0.3
LIME1-201ENST00000309546 CYLC2Q14093 348 aaPredicted RBP16.93■□□□□ 0.3
LIME1-201ENST00000309546 VMACQ2NL98 169 aa16.93■□□□□ 0.3
LIME1-201ENST00000309546 MMEL1Q495T6 779 aa16.93■□□□□ 0.3
LIME1-201ENST00000309546 LINC00114Q6XXX2 140 aa16.93■□□□□ 0.3
LIME1-201ENST00000309546 PXKQ7Z7A4 578 aa16.93■□□□□ 0.3
LIME1-201ENST00000309546 NUP37Q8NFH4 326 aa16.93■□□□□ 0.3
LIME1-201ENST00000309546 TRAPPC13A5PLN9 417 aa16.92■□□□□ 0.3
LIME1-201ENST00000309546 THY1P04216 161 aa16.92■□□□□ 0.3
LIME1-201ENST00000309546 UMPSP11172 480 aa16.92■□□□□ 0.3
LIME1-201ENST00000309546 IFNGR1P15260 489 aa16.92■□□□□ 0.3
LIME1-201ENST00000309546 THBS4P35443 961 aa16.92■□□□□ 0.3
LIME1-201ENST00000309546 CSNK1A1P48729 337 aa16.92■□□□□ 0.3
LIME1-201ENST00000309546 SNTB2Q13425 540 aaKnown RBP16.92■□□□□ 0.3
LIME1-201ENST00000309546 ZNF74Q16587 644 aa16.92■□□□□ 0.3
LIME1-201ENST00000309546 GSG1Q2KHT4 349 aa16.92■□□□□ 0.3
LIME1-201ENST00000309546 RABL3Q5HYI8 236 aa16.92■□□□□ 0.3
LIME1-201ENST00000309546 C6orf52Q5T4I8 152 aa16.92■□□□□ 0.3
LIME1-201ENST00000309546 NANOGP8Q6NSW7 305 aa16.92■□□□□ 0.3
LIME1-201ENST00000309546 TSPYL5Q86VY4 417 aaPredicted RBP16.92■□□□□ 0.3
LIME1-201ENST00000309546 CCDC36Q8IYA8 594 aa16.92■□□□□ 0.3
LIME1-201ENST00000309546 LRR1Q96L50 414 aa16.92■□□□□ 0.3
LIME1-201ENST00000309546 MDFIQ99750 246 aa16.92■□□□□ 0.3
LIME1-201ENST00000309546 PIMREGQ9BSJ6 248 aa16.92■□□□□ 0.3
LIME1-201ENST00000309546 NANOGQ9H9S0 305 aa16.92■□□□□ 0.3
LIME1-201ENST00000309546 NOX3Q9HBY0 568 aa16.92■□□□□ 0.3
LIME1-201ENST00000309546 FGFR1OP2Q9NVK5 253 aa16.92■□□□□ 0.3
LIME1-201ENST00000309546 VSTM5A8MXK1 200 aa16.91■□□□□ 0.3
LIME1-201ENST00000309546 hCG_2039718K7EN88 272 aa16.91■□□□□ 0.3
LIME1-201ENST00000309546 LYPD3O95274 346 aa16.91■□□□□ 0.3
LIME1-201ENST00000309546 USF1P22415 310 aaPredicted RBP16.91■□□□□ 0.3
LIME1-201ENST00000309546 GZMMP51124 257 aa16.91■□□□□ 0.3
LIME1-201ENST00000309546 ARFIP2P53365 341 aa16.91■□□□□ 0.3
LIME1-201ENST00000309546 VLDLRP98155 873 aa16.91■□□□□ 0.3
LIME1-201ENST00000309546 PIGFQ07326 219 aa16.91■□□□□ 0.3
LIME1-201ENST00000309546 GGTLC2Q14390 218 aa16.91■□□□□ 0.3
LIME1-201ENST00000309546 MELKQ14680 651 aa16.91■□□□□ 0.3
LIME1-201ENST00000309546 EFNB3Q15768 340 aa16.91■□□□□ 0.3
LIME1-201ENST00000309546 REP15Q6BDI9 236 aa16.91■□□□□ 0.3
LIME1-201ENST00000309546 KRT80Q6KB66 452 aa16.91■□□□□ 0.3
LIME1-201ENST00000309546 NHLRC1Q6VVB1 395 aa16.91■□□□□ 0.3
LIME1-201ENST00000309546 SLC35D2Q76EJ3 337 aa16.91■□□□□ 0.3
LIME1-201ENST00000309546 SPATA21Q7Z572 469 aa16.91■□□□□ 0.3
LIME1-201ENST00000309546 SNX32Q86XE0 403 aa16.91■□□□□ 0.3
LIME1-201ENST00000309546 SVOPLQ8N434 492 aa16.91■□□□□ 0.3
LIME1-201ENST00000309546 RASSF5Q8WWW0 418 aa16.91■□□□□ 0.3
LIME1-201ENST00000309546 PROX1Q92786 737 aa16.91■□□□□ 0.3
LIME1-201ENST00000309546 LRRC58Q96CX6 371 aa16.91■□□□□ 0.3
LIME1-201ENST00000309546 FOXB1Q99853 325 aa16.91■□□□□ 0.3
LIME1-201ENST00000309546 ECSITQ9BQ95 431 aa16.91■□□□□ 0.3
LIME1-201ENST00000309546 PLK3Q9H4B4 646 aa16.91■□□□□ 0.3
LIME1-201ENST00000309546 ZNF442Q9H7R0 627 aa16.91■□□□□ 0.3
LIME1-201ENST00000309546 NANSQ9NR45 359 aa16.91■□□□□ 0.3
LIME1-201ENST00000309546 SH3GLB1Q9Y371 365 aa16.91■□□□□ 0.3
LIME1-201ENST00000309546 MRASO14807 208 aa16.9■□□□□ 0.3
LIME1-201ENST00000309546 RNF13O43567 381 aa16.9■□□□□ 0.3
LIME1-201ENST00000309546 ZNF16P17020 682 aaPredicted RBP16.9■□□□□ 0.3
LIME1-201ENST00000309546 TNFRSF1BP20333 461 aa16.9■□□□□ 0.3
LIME1-201ENST00000309546 NPR2P20594 1047 aa16.9■□□□□ 0.3
LIME1-201ENST00000309546 PTDSS1P48651 473 aaKnown RBP16.9■□□□□ 0.3
LIME1-201ENST00000309546 PPOXP50336 477 aa16.9■□□□□ 0.3
LIME1-201ENST00000309546 CRYBA2P53672 197 aa16.9■□□□□ 0.3
LIME1-201ENST00000309546 DAG1Q14118 895 aa16.9■□□□□ 0.3
LIME1-201ENST00000309546 HIPK1Q86Z02 1210 aa16.9■□□□□ 0.3
LIME1-201ENST00000309546 LRRC17Q8N6Y2 441 aa16.9■□□□□ 0.3
LIME1-201ENST00000309546 MS4A3Q96HJ5 214 aa16.9■□□□□ 0.3
LIME1-201ENST00000309546 MPP4Q96JB8 637 aa16.9■□□□□ 0.3
LIME1-201ENST00000309546 SH3GL1Q99961 368 aa16.9■□□□□ 0.3
LIME1-201ENST00000309546 RAB1BQ9H0U4 201 aa16.9■□□□□ 0.3
LIME1-201ENST00000309546 DYNLRB1Q9NP97 96 aa16.9■□□□□ 0.3
LIME1-201ENST00000309546 SH3PXD2BA1X283 911 aa16.89■□□□□ 0.29
LIME1-201ENST00000309546 FXYD1O00168 92 aa16.89■□□□□ 0.29
LIME1-201ENST00000309546 RAB36O95755 333 aa16.89■□□□□ 0.29
LIME1-201ENST00000309546 HIST1H2ABP04908 130 aa16.89■□□□□ 0.29
LIME1-201ENST00000309546 VIMP08670 466 aaKnown RBP16.89■□□□□ 0.29
LIME1-201ENST00000309546 TAS2R41P59536 307 aa16.89■□□□□ 0.29
LIME1-201ENST00000309546 LSM11P83369 360 aaKnown RBP eCLIP16.89■□□□□ 0.29
LIME1-201ENST00000309546 KLF10Q13118 480 aa16.89■□□□□ 0.29
LIME1-201ENST00000309546 CHRFAM7AQ494W8 412 aa16.89■□□□□ 0.29
LIME1-201ENST00000309546 DEF8Q6ZN54 512 aa16.89■□□□□ 0.29
LIME1-201ENST00000309546 CCDC80Q76M96 950 aa16.89■□□□□ 0.29
LIME1-201ENST00000309546 HIST3H2AQ7L7L0 130 aa16.89■□□□□ 0.29
LIME1-201ENST00000309546 NANOGNBQ7Z5D8 188 aa16.89■□□□□ 0.29
LIME1-201ENST00000309546 CARM1Q86X55 608 aa16.89■□□□□ 0.29
LIME1-201ENST00000309546 IL17RDQ8NFM7 739 aa16.89■□□□□ 0.29
LIME1-201ENST00000309546 OR8J3Q8NGG0 315 aa16.89■□□□□ 0.29
LIME1-201ENST00000309546 HIST1H2ACQ93077 130 aa16.89■□□□□ 0.29
LIME1-201ENST00000309546 PCDHAC1Q9H158 963 aa16.89■□□□□ 0.29
LIME1-201ENST00000309546 B3GNT2Q9NY97 397 aa16.89■□□□□ 0.29
LIME1-201ENST00000309546 TAS2R5Q9NYW4 299 aa16.89■□□□□ 0.29
LIME1-201ENST00000309546 ZNF229Q9UJW7 825 aa16.89■□□□□ 0.29
LIME1-201ENST00000309546 BBIP1A8MTZ0 92 aa16.88■□□□□ 0.29
LIME1-201ENST00000309546 NDUFS8O00217 210 aa16.88■□□□□ 0.29
LIME1-201ENST00000309546 SHOX2O60902 331 aaPredicted RBP16.88■□□□□ 0.29
LIME1-201ENST00000309546 ERCC1P07992 297 aaPredicted RBP16.88■□□□□ 0.29
LIME1-201ENST00000309546 IGHV4-31P0DP07 118 aa16.88■□□□□ 0.29
LIME1-201ENST00000309546 NR4A2P43354 598 aa16.88■□□□□ 0.29
LIME1-201ENST00000309546 GIPRP48546 466 aa16.88■□□□□ 0.29
LIME1-201ENST00000309546 MAPRE2Q15555 327 aa16.88■□□□□ 0.29
LIME1-201ENST00000309546 IQCCQ4KMZ1 466 aa16.88■□□□□ 0.29
Retrieved 100 of 20,778 RNA–protein pairs in 54.4 ms