RNA–Protein interactions for RNA: ENST00000307662.4

SYNPO-201, Transcript of synaptopodin, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene SYNPO, Length 5,374 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNPO-201ENST00000307662 OR52I2Q8NH67 350 aa16.04■□□□□ 0.16
SYNPO-201ENST00000307662 ADAMTSL3P82987 1691 aa16.03■□□□□ 0.16
SYNPO-201ENST00000307662 MAGEB4O15481 346 aaPredicted RBP16.03■□□□□ 0.16
SYNPO-201ENST00000307662 DGCR2P98153 550 aa16.03■□□□□ 0.16
SYNPO-201ENST00000307662 C17orf107Q6ZR85 190 aa16.03■□□□□ 0.16
SYNPO-201ENST00000307662 TEX19Q8NA77 164 aa16.03■□□□□ 0.16
SYNPO-201ENST00000307662 MS4A4AQ96JQ5 239 aa16.03■□□□□ 0.16
SYNPO-201ENST00000307662 PCDHGA5Q9Y5G8 931 aa16.03■□□□□ 0.16
SYNPO-201ENST00000307662 SERINC4A6NH21 518 aa16.03■□□□□ 0.16
SYNPO-201ENST00000307662 PFN3P60673 137 aa16.03■□□□□ 0.16
SYNPO-201ENST00000307662 ATPAF1Q5TC12 328 aaPredicted RBP16.03■□□□□ 0.16
SYNPO-201ENST00000307662 ANKLE1Q8NAG6 615 aa16.03■□□□□ 0.16
SYNPO-201ENST00000307662 PIGCQ92535 297 aa16.03■□□□□ 0.16
SYNPO-201ENST00000307662 CASD1Q96PB1 797 aa16.03■□□□□ 0.16
SYNPO-201ENST00000307662 NCDNQ9UBB6 729 aa16.03■□□□□ 0.16
SYNPO-201ENST00000307662 PDE4DIPQ5VU43 2346 aa16.03■□□□□ 0.16
SYNPO-201ENST00000307662 AKR7A2O43488 359 aa16.03■□□□□ 0.16
SYNPO-201ENST00000307662 LGI1O95970 557 aa16.03■□□□□ 0.16
SYNPO-201ENST00000307662 OR13C7P0DN81 318 aa16.03■□□□□ 0.16
SYNPO-201ENST00000307662 KIR2DS5A0A0G2JLQ3 304 aa16.03■□□□□ 0.16
SYNPO-201ENST00000307662 A0A0G2JNG1 304 aa16.03■□□□□ 0.16
SYNPO-201ENST00000307662 TUBAL3A6NHL2 446 aa16.03■□□□□ 0.16
SYNPO-201ENST00000307662 KIR2DS3K7RE56 304 aa16.03■□□□□ 0.16
SYNPO-201ENST00000307662 BET1O15155 118 aa16.03■□□□□ 0.16
SYNPO-201ENST00000307662 MTCP1P56278 107 aa16.03■□□□□ 0.16
SYNPO-201ENST00000307662 SNTB1Q13884 538 aaKnown RBP16.03■□□□□ 0.16
SYNPO-201ENST00000307662 KIR2DS5Q14953 304 aa16.03■□□□□ 0.16
SYNPO-201ENST00000307662 STK11Q15831 433 aa16.03■□□□□ 0.16
SYNPO-201ENST00000307662 SLC36A2Q495M3 483 aa16.03■□□□□ 0.16
SYNPO-201ENST00000307662 OLIG1Q8TAK6 271 aa16.03■□□□□ 0.16
SYNPO-201ENST00000307662 INSM2Q96T92 566 aaPredicted RBP16.03■□□□□ 0.16
SYNPO-201ENST00000307662 SGPP1Q9BX95 441 aa16.03■□□□□ 0.16
SYNPO-201ENST00000307662 HAO2Q9NYQ3 351 aa16.03■□□□□ 0.16
SYNPO-201ENST00000307662 ZAR1LA6NP61 321 aa16.02■□□□□ 0.16
SYNPO-201ENST00000307662 CCSO14618 274 aa16.02■□□□□ 0.16
SYNPO-201ENST00000307662 B4GALT3O60512 393 aa16.02■□□□□ 0.16
SYNPO-201ENST00000307662 LPLP06858 475 aa16.02■□□□□ 0.16
SYNPO-201ENST00000307662 CHRM4P08173 479 aa16.02■□□□□ 0.16
SYNPO-201ENST00000307662 CPT1CQ8TCG5 803 aa16.02■□□□□ 0.16
SYNPO-201ENST00000307662 PSMF1Q92530 271 aa16.02■□□□□ 0.16
SYNPO-201ENST00000307662 DAZAP1Q96EP5 407 aaKnown RBP16.02■□□□□ 0.16
SYNPO-201ENST00000307662 C20orf24Q9BUV8 137 aa16.02■□□□□ 0.16
SYNPO-201ENST00000307662 SUSD5O60279 629 aa16.02■□□□□ 0.16
SYNPO-201ENST00000307662 BCKDHBP21953 392 aa16.02■□□□□ 0.16
SYNPO-201ENST00000307662 AADACL3Q5VUY0 350 aa16.02■□□□□ 0.16
SYNPO-201ENST00000307662 ZNF439Q8NDP4 499 aa16.02■□□□□ 0.16
SYNPO-201ENST00000307662 NUDT8Q8WV74 236 aa16.02■□□□□ 0.16
SYNPO-201ENST00000307662 RNF32Q9H0A6 362 aa16.02■□□□□ 0.16
SYNPO-201ENST00000307662 ISYNA1Q9NPH2 558 aa16.02■□□□□ 0.16
SYNPO-201ENST00000307662 ATP13A2Q9NQ11 1180 aa16.02■□□□□ 0.16
SYNPO-201ENST00000307662 EMC9Q9Y3B6 208 aa16.02■□□□□ 0.16
SYNPO-201ENST00000307662 C20orf202A1L168 122 aa16.02■□□□□ 0.15
SYNPO-201ENST00000307662 RAB38P57729 211 aa16.02■□□□□ 0.15
SYNPO-201ENST00000307662 WDR5BQ86VZ2 330 aa16.02■□□□□ 0.15
SYNPO-201ENST00000307662 VRK3Q8IV63 474 aa16.02■□□□□ 0.15
SYNPO-201ENST00000307662 C1orf87Q8N0U7 546 aa16.02■□□□□ 0.15
SYNPO-201ENST00000307662 SLC39A11Q8N1S5 342 aa16.02■□□□□ 0.15
SYNPO-201ENST00000307662 LTB4R2Q9NPC1 389 aa16.02■□□□□ 0.15
SYNPO-201ENST00000307662 GLCEO94923 617 aa16.02■□□□□ 0.15
SYNPO-201ENST00000307662 TXNDC12O95881 172 aa16.02■□□□□ 0.15
SYNPO-201ENST00000307662 RFX2P48378 723 aa16.02■□□□□ 0.15
SYNPO-201ENST00000307662 PCBD1P61457 104 aa16.02■□□□□ 0.15
SYNPO-201ENST00000307662 TOR2AQ5JU69 321 aa16.02■□□□□ 0.15
SYNPO-201ENST00000307662 SHEQ5VZ18 495 aa16.02■□□□□ 0.15
SYNPO-201ENST00000307662 OR52W1Q6IF63 320 aa16.02■□□□□ 0.15
SYNPO-201ENST00000307662 P2RY10O00398 339 aa16.01■□□□□ 0.15
SYNPO-201ENST00000307662 SOCS7O14512 581 aa16.01■□□□□ 0.15
SYNPO-201ENST00000307662 SELENOFO60613 162 aa16.01■□□□□ 0.15
SYNPO-201ENST00000307662 B3GALNT1O75752 331 aa16.01■□□□□ 0.15
SYNPO-201ENST00000307662 DSC1Q08554 894 aa16.01■□□□□ 0.15
SYNPO-201ENST00000307662 SELENBP1Q13228 472 aa16.01■□□□□ 0.15
SYNPO-201ENST00000307662 CAMK2BQ13554 666 aa16.01■□□□□ 0.15
SYNPO-201ENST00000307662 AANATQ16613 207 aa16.01■□□□□ 0.15
SYNPO-201ENST00000307662 BPHLQ86WA6 291 aaPredicted RBP16.01■□□□□ 0.15
SYNPO-201ENST00000307662 BAGE3Q86Y29 109 aa16.01■□□□□ 0.15
SYNPO-201ENST00000307662 BAGE2Q86Y30 109 aa16.01■□□□□ 0.15
SYNPO-201ENST00000307662 TCTE3Q8IZS6 198 aa16.01■□□□□ 0.15
SYNPO-201ENST00000307662 PLPP7Q8NBV4 271 aa16.01■□□□□ 0.15
SYNPO-201ENST00000307662 ADAM19Q9H013 955 aa16.01■□□□□ 0.15
SYNPO-201ENST00000307662 ZMAT3Q9HA38 289 aaKnown RBP16.01■□□□□ 0.15
SYNPO-201ENST00000307662 MYO10Q9HD67 2058 aa16.01■□□□□ 0.15
SYNPO-201ENST00000307662 OR7C1O76099 320 aaPredicted RBP16.01■□□□□ 0.15
SYNPO-201ENST00000307662 NTHL1P78549 312 aa16.01■□□□□ 0.15
SYNPO-201ENST00000307662 SLC7A9P82251 487 aa16.01■□□□□ 0.15
SYNPO-201ENST00000307662 AKR1C1Q04828 323 aa16.01■□□□□ 0.15
SYNPO-201ENST00000307662 C5orf46Q6UWT4 87 aa16.01■□□□□ 0.15
SYNPO-201ENST00000307662 ZNF836Q6ZNA1 936 aa16.01■□□□□ 0.15
SYNPO-201ENST00000307662 MITD1Q8WV92 249 aa16.01■□□□□ 0.15
SYNPO-201ENST00000307662 NEURL2Q9BR09 285 aa16.01■□□□□ 0.15
SYNPO-201ENST00000307662 MN1Q10571 1320 aaPredicted RBP16.01■□□□□ 0.15
SYNPO-201ENST00000307662 PRSS38A1L453 326 aa16.01■□□□□ 0.15
SYNPO-201ENST00000307662 SCAF4O95104 1147 aaKnown RBP16.01■□□□□ 0.15
SYNPO-201ENST00000307662 DDAH2O95865 285 aa16.01■□□□□ 0.15
SYNPO-201ENST00000307662 HLA-HP01893 362 aa16.01■□□□□ 0.15
SYNPO-201ENST00000307662 PVRP15151 417 aa16.01■□□□□ 0.15
SYNPO-201ENST00000307662 SLC6A11P48066 632 aa16.01■□□□□ 0.15
SYNPO-201ENST00000307662 EVX1P49640 407 aa16.01■□□□□ 0.15
SYNPO-201ENST00000307662 THBS3P49746 956 aa16.01■□□□□ 0.15
SYNPO-201ENST00000307662 NPY4RP50391 375 aa16.01■□□□□ 0.15
SYNPO-201ENST00000307662 PMPCAQ10713 525 aa16.01■□□□□ 0.15
Retrieved 100 of 20,778 RNA–protein pairs in 32.2 ms