RNA–Protein interactions for RNA: ENST00000301897.5

CCDC88B-201, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 1 (best) BASIC

Gene CCDC88B, Length 870 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-201ENST00000301897 SLC22A23A1A5C7 686 aa12.67□□□□□ -0.38
CCDC88B-201ENST00000301897 ZNF726A6NNF4 738 aa12.67□□□□□ -0.38
CCDC88B-201ENST00000301897 J3QLI3 93 aa12.67□□□□□ -0.38
CCDC88B-201ENST00000301897 HDAC3O15379 428 aa12.67□□□□□ -0.38
CCDC88B-201ENST00000301897 RGS16O15492 202 aaPredicted RBP12.67□□□□□ -0.38
CCDC88B-201ENST00000301897 ETS2P15036 469 aa12.67□□□□□ -0.38
CCDC88B-201ENST00000301897 TCN1P20061 433 aaPredicted RBP12.67□□□□□ -0.38
CCDC88B-201ENST00000301897 BGNP21810 368 aa12.67□□□□□ -0.38
CCDC88B-201ENST00000301897 PRKAR1BP31321 381 aa12.67□□□□□ -0.38
CCDC88B-201ENST00000301897 PTDSS1P48651 473 aaKnown RBP12.67□□□□□ -0.38
CCDC88B-201ENST00000301897 RAB1AP62820 205 aa12.67□□□□□ -0.38
CCDC88B-201ENST00000301897 HOXC5Q00444 222 aa12.67□□□□□ -0.38
CCDC88B-201ENST00000301897 TEKQ02763 1124 aa12.67□□□□□ -0.38
CCDC88B-201ENST00000301897 PIGFQ07326 219 aa12.67□□□□□ -0.38
CCDC88B-201ENST00000301897 FADDQ13158 208 aa12.67□□□□□ -0.38
CCDC88B-201ENST00000301897 MSMPQ1L6U9 139 aa12.67□□□□□ -0.38
CCDC88B-201ENST00000301897 PCGF3Q3KNV8 242 aa12.67□□□□□ -0.38
CCDC88B-201ENST00000301897 GLIPR1L2Q4G1C9 344 aa12.67□□□□□ -0.38
CCDC88B-201ENST00000301897 CARD17Q5XLA6 110 aa12.67□□□□□ -0.38
CCDC88B-201ENST00000301897 ACSM5Q6NUN0 579 aa12.67□□□□□ -0.38
CCDC88B-201ENST00000301897 ULK3Q6PHR2 472 aa12.67□□□□□ -0.38
CCDC88B-201ENST00000301897 PIWIL3Q7Z3Z3 882 aaKnown RBP12.67□□□□□ -0.38
CCDC88B-201ENST00000301897 OR6N1Q8NGY5 312 aa12.67□□□□□ -0.38
CCDC88B-201ENST00000301897 SLC47A1Q96FL8 570 aa12.67□□□□□ -0.38
CCDC88B-201ENST00000301897 SLC41A3Q96GZ6 507 aa12.67□□□□□ -0.38
CCDC88B-201ENST00000301897 ZNF75AQ96N20 296 aa12.67□□□□□ -0.38
CCDC88B-201ENST00000301897 FOXB1Q99853 325 aa12.67□□□□□ -0.38
CCDC88B-201ENST00000301897 A4GALTQ9NPC4 353 aa12.67□□□□□ -0.38
CCDC88B-201ENST00000301897 SLC6A13Q9NSD5 602 aa12.67□□□□□ -0.38
CCDC88B-201ENST00000301897 KLHL14Q9P2G3 628 aa12.67□□□□□ -0.38
CCDC88B-201ENST00000301897 DUSP13Q9UII6 198 aa12.67□□□□□ -0.38
CCDC88B-201ENST00000301897 A0A087WUJ7 227 aa12.66□□□□□ -0.38
CCDC88B-201ENST00000301897 A0A0G2JMP0 313 aa12.66□□□□□ -0.38
CCDC88B-201ENST00000301897 A0A0X1KG70 313 aa12.66□□□□□ -0.38
CCDC88B-201ENST00000301897 A0A1B0GWA3 101 aa12.66□□□□□ -0.38
CCDC88B-201ENST00000301897 C5orf58C9J3I9 102 aa12.66□□□□□ -0.38
CCDC88B-201ENST00000301897 MS4A18H0YCH9 400 aa12.66□□□□□ -0.38
CCDC88B-201ENST00000301897 RP2O75695 350 aa12.66□□□□□ -0.38
CCDC88B-201ENST00000301897 EPHA3P29320 983 aa12.66□□□□□ -0.38
CCDC88B-201ENST00000301897 GIPRP48546 466 aa12.66□□□□□ -0.38
CCDC88B-201ENST00000301897 SEC24CP53992 1094 aa12.66□□□□□ -0.38
CCDC88B-201ENST00000301897 NCALDP61601 193 aa12.66□□□□□ -0.38
CCDC88B-201ENST00000301897 PUDPQ08623 228 aa12.66□□□□□ -0.38
CCDC88B-201ENST00000301897 CAMK2DQ13557 499 aa12.66□□□□□ -0.38
CCDC88B-201ENST00000301897 NKPD1Q17RQ9 610 aa12.66□□□□□ -0.38
CCDC88B-201ENST00000301897 MS4A18Q3C1V0 323 aa12.66□□□□□ -0.38
CCDC88B-201ENST00000301897 KRT71Q3SY84 523 aa12.66□□□□□ -0.38
CCDC88B-201ENST00000301897 ALG10BQ5I7T1 473 aa12.66□□□□□ -0.38
CCDC88B-201ENST00000301897 TMEM154Q6P9G4 183 aa12.66□□□□□ -0.38
CCDC88B-201ENST00000301897 C1QL2Q7Z5L3 287 aa12.66□□□□□ -0.38
CCDC88B-201ENST00000301897 CARM1Q86X55 608 aa12.66□□□□□ -0.38
CCDC88B-201ENST00000301897 KRT73Q86Y46 540 aa12.66□□□□□ -0.38
CCDC88B-201ENST00000301897 OR4M2Q8NGB6 313 aa12.66□□□□□ -0.38
CCDC88B-201ENST00000301897 SNX33Q8WV41 574 aa12.66□□□□□ -0.38
CCDC88B-201ENST00000301897 YIPF5Q969M3 257 aa12.66□□□□□ -0.38
CCDC88B-201ENST00000301897 SPATA5L1Q9BVQ7 753 aa12.66□□□□□ -0.38
CCDC88B-201ENST00000301897 C1orf198Q9H425 327 aa12.66□□□□□ -0.38
CCDC88B-201ENST00000301897 ZNF665Q9H7R5 613 aa12.66□□□□□ -0.38
CCDC88B-201ENST00000301897 NKIRAS2Q9NYR9 191 aa12.66□□□□□ -0.38
CCDC88B-201ENST00000301897 ZIM2Q9NZV7 527 aa12.66□□□□□ -0.38
CCDC88B-201ENST00000301897 BCL10O95999 233 aa12.65□□□□□ -0.38
CCDC88B-201ENST00000301897 SERPINA5P05154 406 aa12.65□□□□□ -0.38
CCDC88B-201ENST00000301897 BMP2P12643 396 aa12.65□□□□□ -0.38
CCDC88B-201ENST00000301897 B4GALT1P15291 398 aa12.65□□□□□ -0.38
CCDC88B-201ENST00000301897 GATA3P23771 443 aa12.65□□□□□ -0.38
CCDC88B-201ENST00000301897 BST1Q10588 318 aa12.65□□□□□ -0.38
CCDC88B-201ENST00000301897 PMS2P3Q13401 168 aa12.65□□□□□ -0.38
CCDC88B-201ENST00000301897 MPP2Q14168 576 aa12.65□□□□□ -0.38
CCDC88B-201ENST00000301897 MAD2L1BPQ15013 274 aaPredicted RBP12.65□□□□□ -0.38
CCDC88B-201ENST00000301897 RGNQ15493 299 aa12.65□□□□□ -0.38
CCDC88B-201ENST00000301897 MOGQ16653 247 aa12.65□□□□□ -0.38
CCDC88B-201ENST00000301897 PHYHD1Q5SRE7 291 aa12.65□□□□□ -0.38
CCDC88B-201ENST00000301897 C6orf10Q5SRN2 563 aa12.65□□□□□ -0.38
CCDC88B-201ENST00000301897 NXNQ6DKJ4 435 aa12.65□□□□□ -0.38
CCDC88B-201ENST00000301897 RGS7BPQ6MZT1 257 aaPredicted RBP12.65□□□□□ -0.38
CCDC88B-201ENST00000301897 DHRS4L2Q6PKH6 230 aa12.65□□□□□ -0.38
CCDC88B-201ENST00000301897 THSD4Q6ZMP0 1018 aa12.65□□□□□ -0.38
CCDC88B-201ENST00000301897 PXKQ7Z7A4 578 aa12.65□□□□□ -0.38
CCDC88B-201ENST00000301897 DPPA2Q7Z7J5 298 aa12.65□□□□□ -0.38
CCDC88B-201ENST00000301897 LRP11Q86VZ4 500 aa12.65□□□□□ -0.38
CCDC88B-201ENST00000301897 EMC6Q9BV81 110 aa12.65□□□□□ -0.38
CCDC88B-201ENST00000301897 EVA1AQ9H8M9 152 aa12.65□□□□□ -0.38
CCDC88B-201ENST00000301897 HINT3Q9NQE9 182 aaKnown RBP12.65□□□□□ -0.38
CCDC88B-201ENST00000301897 G6PC2Q9NQR9 355 aa12.65□□□□□ -0.38
CCDC88B-201ENST00000301897 SLCO1C1Q9NYB5 712 aa12.65□□□□□ -0.38
CCDC88B-201ENST00000301897 MRPL39Q9NYK5 338 aaKnown RBP12.65□□□□□ -0.38
CCDC88B-201ENST00000301897 TGP01266 2768 aa12.64□□□□□ -0.39
CCDC88B-201ENST00000301897 IGKV1D-42A0A075B6H8 117 aa12.64□□□□□ -0.39
CCDC88B-201ENST00000301897 WNT9BO14905 357 aa12.64□□□□□ -0.39
CCDC88B-201ENST00000301897 NCR1O76036 304 aa12.64□□□□□ -0.39
CCDC88B-201ENST00000301897 MPZL1O95297 269 aa12.64□□□□□ -0.39
CCDC88B-201ENST00000301897 HPRP00739 348 aa12.64□□□□□ -0.39
CCDC88B-201ENST00000301897 PTHP01270 115 aa12.64□□□□□ -0.39
CCDC88B-201ENST00000301897 MT-ND5P03915 603 aa12.64□□□□□ -0.39
CCDC88B-201ENST00000301897 NAT2P11245 290 aa12.64□□□□□ -0.39
CCDC88B-201ENST00000301897 HLA-DOBP13765 273 aa12.64□□□□□ -0.39
CCDC88B-201ENST00000301897 CSNK1A1P48729 337 aa12.64□□□□□ -0.39
CCDC88B-201ENST00000301897 KLF3P57682 345 aaPredicted RBP12.64□□□□□ -0.39
CCDC88B-201ENST00000301897 RAB39AQ14964 217 aa12.64□□□□□ -0.39
CCDC88B-201ENST00000301897 SWT1Q5T5J6 900 aaKnown RBP12.64□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 25 ms