RNA–Protein interactions for RNA: ENST00000278386.10

CD44-203, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 1 (best) BASIC

Gene CD44, Length 484 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-203ENST00000278386 NOX1Q9Y5S8 564 aa11.03□□□□□ -0.64
CD44-203ENST00000278386 LRRN3E7EW58 273 aa11.02□□□□□ -0.65
CD44-203ENST00000278386 MS4A18H0YCH9 400 aa11.02□□□□□ -0.65
CD44-203ENST00000278386 M0R3H8 397 aa11.02□□□□□ -0.65
CD44-203ENST00000278386 HAX1O00165 279 aa11.02□□□□□ -0.65
CD44-203ENST00000278386 SERPINB7O75635 380 aa11.02□□□□□ -0.65
CD44-203ENST00000278386 TGDSO95455 350 aa11.02□□□□□ -0.65
CD44-203ENST00000278386 ADRA2AP08913 450 aa11.02□□□□□ -0.65
CD44-203ENST00000278386 IL2RGP31785 369 aa11.02□□□□□ -0.65
CD44-203ENST00000278386 CSNK1A1P48729 337 aa11.02□□□□□ -0.65
CD44-203ENST00000278386 IDH3AP50213 366 aa11.02□□□□□ -0.65
CD44-203ENST00000278386 AQP5P55064 265 aa11.02□□□□□ -0.65
CD44-203ENST00000278386 CDH12P55289 794 aa11.02□□□□□ -0.65
CD44-203ENST00000278386 GALK2Q01415 458 aa11.02□□□□□ -0.65
CD44-203ENST00000278386 SQLEQ14534 574 aa11.02□□□□□ -0.65
CD44-203ENST00000278386 CYP51A1Q16850 503 aa11.02□□□□□ -0.65
CD44-203ENST00000278386 MS4A18Q3C1V0 323 aa11.02□□□□□ -0.65
CD44-203ENST00000278386 GKAP1Q5VSY0 366 aaPredicted RBP11.02□□□□□ -0.65
CD44-203ENST00000278386 SMYD1Q8NB12 490 aa11.02□□□□□ -0.65
CD44-203ENST00000278386 OR6S1Q8NH40 331 aa11.02□□□□□ -0.65
CD44-203ENST00000278386 UBASH3BQ8TF42 649 aa11.02□□□□□ -0.65
CD44-203ENST00000278386 DYDC1Q8WWB3 177 aa11.02□□□□□ -0.65
CD44-203ENST00000278386 SLC41A3Q96GZ6 507 aa11.02□□□□□ -0.65
CD44-203ENST00000278386 TXNDC15Q96J42 360 aa11.02□□□□□ -0.65
CD44-203ENST00000278386 LRR1Q96L50 414 aa11.02□□□□□ -0.65
CD44-203ENST00000278386 DOK1Q99704 481 aa11.02□□□□□ -0.65
CD44-203ENST00000278386 FOXB1Q99853 325 aa11.02□□□□□ -0.65
CD44-203ENST00000278386 SYT3Q9BQG1 590 aa11.02□□□□□ -0.65
CD44-203ENST00000278386 CCDC28BQ9BUN5 200 aa11.02□□□□□ -0.65
CD44-203ENST00000278386 MRPL37Q9BZE1 423 aaKnown RBP11.02□□□□□ -0.65
CD44-203ENST00000278386 MRPL39Q9NYK5 338 aaKnown RBP11.02□□□□□ -0.65
CD44-203ENST00000278386 SPEF1Q9Y4P9 236 aa11.02□□□□□ -0.65
CD44-203ENST00000278386 TRBV5-3A0A0A0MS03 114 aa11.01□□□□□ -0.65
CD44-203ENST00000278386 LOC102725191A0A1B0GVB3 256 aa11.01□□□□□ -0.65
CD44-203ENST00000278386 TMEM129A0AVI4 362 aa11.01□□□□□ -0.65
CD44-203ENST00000278386 LYNX1G3V0Z9 82 aa11.01□□□□□ -0.65
CD44-203ENST00000278386 M0R233 179 aa11.01□□□□□ -0.65
CD44-203ENST00000278386 UBL3O95164 117 aa11.01□□□□□ -0.65
CD44-203ENST00000278386 OR6A2O95222 327 aa11.01□□□□□ -0.65
CD44-203ENST00000278386 OPN1SWP03999 348 aa11.01□□□□□ -0.65
CD44-203ENST00000278386 TACSTD2P09758 323 aa11.01□□□□□ -0.65
CD44-203ENST00000278386 ADORA3P0DMS8 318 aa11.01□□□□□ -0.65
CD44-203ENST00000278386 LYNX1P0DP58 116 aa11.01□□□□□ -0.65
CD44-203ENST00000278386 NR4A1P22736 598 aa11.01□□□□□ -0.65
CD44-203ENST00000278386 GIFP27352 417 aa11.01□□□□□ -0.65
CD44-203ENST00000278386 LSP1P33241 339 aa11.01□□□□□ -0.65
CD44-203ENST00000278386 THBS2P35442 1172 aa11.01□□□□□ -0.65
CD44-203ENST00000278386 SRP14P37108 136 aaKnown RBP11.01□□□□□ -0.65
CD44-203ENST00000278386 GIPRP48546 466 aa11.01□□□□□ -0.65
CD44-203ENST00000278386 BIDP55957 195 aa11.01□□□□□ -0.65
CD44-203ENST00000278386 RPS23P62266 143 aaKnown RBP11.01□□□□□ -0.65
CD44-203ENST00000278386 TRIP10Q15642 601 aa11.01□□□□□ -0.65
CD44-203ENST00000278386 SWT1Q5T5J6 900 aaKnown RBP11.01□□□□□ -0.65
CD44-203ENST00000278386 AGBL2Q5U5Z8 902 aa11.01□□□□□ -0.65
CD44-203ENST00000278386 DHDDSQ86SQ9 333 aa11.01□□□□□ -0.65
CD44-203ENST00000278386 ZNF786Q8N393 782 aa11.01□□□□□ -0.65
CD44-203ENST00000278386 LINC01356Q8N9X3 169 aa11.01□□□□□ -0.65
CD44-203ENST00000278386 OR5J2Q8NH18 312 aa11.01□□□□□ -0.65
CD44-203ENST00000278386 MRPL24Q96A35 216 aaKnown RBP11.01□□□□□ -0.65
CD44-203ENST00000278386 MCHR1Q99705 422 aa11.01□□□□□ -0.65
CD44-203ENST00000278386 WFDC6Q9BQY6 131 aa11.01□□□□□ -0.65
CD44-203ENST00000278386 CPPED1Q9BRF8 314 aaPredicted RBP11.01□□□□□ -0.65
CD44-203ENST00000278386 TMEM43Q9BTV4 400 aa11.01□□□□□ -0.65
CD44-203ENST00000278386 EVA1AQ9H8M9 152 aa11.01□□□□□ -0.65
CD44-203ENST00000278386 B3GNT2Q9NY97 397 aa11.01□□□□□ -0.65
CD44-203ENST00000278386 CPSF4LA6NMK7 179 aaKnown RBP11□□□□□ -0.65
CD44-203ENST00000278386 KPNA4O00629 521 aaPredicted RBP11□□□□□ -0.65
CD44-203ENST00000278386 PLPP3O14495 311 aa11□□□□□ -0.65
CD44-203ENST00000278386 CHP2O43745 196 aa11□□□□□ -0.65
CD44-203ENST00000278386 SYNGR3O43761 229 aa11□□□□□ -0.65
CD44-203ENST00000278386 LILRA1O75019 489 aa11□□□□□ -0.65
CD44-203ENST00000278386 MT-ATP6P00846 226 aa11□□□□□ -0.65
CD44-203ENST00000278386 C8BP07358 591 aa11□□□□□ -0.65
CD44-203ENST00000278386 ZNF14P17017 642 aaPredicted RBP11□□□□□ -0.65
CD44-203ENST00000278386 GPX2P18283 190 aa11□□□□□ -0.65
CD44-203ENST00000278386 ALDH3B1P43353 468 aa11□□□□□ -0.65
CD44-203ENST00000278386 ATP4BP51164 291 aa11□□□□□ -0.65
CD44-203ENST00000278386 MELKQ14680 651 aa11□□□□□ -0.65
CD44-203ENST00000278386 RINLQ6ZS11 566 aa11□□□□□ -0.65
CD44-203ENST00000278386 WDFY1Q8IWB7 410 aa11□□□□□ -0.65
CD44-203ENST00000278386 C11orf65Q8NCR3 313 aa11□□□□□ -0.65
CD44-203ENST00000278386 VANGL1Q8TAA9 524 aaPredicted RBP11□□□□□ -0.65
CD44-203ENST00000278386 NARFLQ9H6Q4 476 aa11□□□□□ -0.65
CD44-203ENST00000278386 LEF1Q9UJU2 399 aaPredicted RBP11□□□□□ -0.65
CD44-203ENST00000278386 FBXL3Q9UKT7 428 aa11□□□□□ -0.65
CD44-203ENST00000278386 FZR1Q9UM11 496 aa11□□□□□ -0.65
CD44-203ENST00000278386 A0A1W2PPW3 197 aa10.99□□□□□ -0.65
CD44-203ENST00000278386 ANGPT2O15123 496 aa10.99□□□□□ -0.65
CD44-203ENST00000278386 RNF13O43567 381 aa10.99□□□□□ -0.65
CD44-203ENST00000278386 TPST2O60704 377 aa10.99□□□□□ -0.65
CD44-203ENST00000278386 MFN2O95140 757 aa10.99□□□□□ -0.65
CD44-203ENST00000278386 IGFBP1P08833 259 aaPredicted RBP10.99□□□□□ -0.65
CD44-203ENST00000278386 UMPSP11172 480 aa10.99□□□□□ -0.65
CD44-203ENST00000278386 TCN1P20061 433 aaPredicted RBP10.99□□□□□ -0.65
CD44-203ENST00000278386 GPR6P46095 362 aaPredicted RBP10.99□□□□□ -0.65
CD44-203ENST00000278386 CDH15P55291 814 aa10.99□□□□□ -0.65
CD44-203ENST00000278386 MTPNP58546 118 aa10.99□□□□□ -0.65
CD44-203ENST00000278386 RAB1AP62820 205 aa10.99□□□□□ -0.65
CD44-203ENST00000278386 RIN1Q13671 783 aa10.99□□□□□ -0.65
CD44-203ENST00000278386 RAB39AQ14964 217 aa10.99□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 26.3 ms