RNA–Protein interactions for RNA: ENST00000265560.8

USP4-201, Transcript of ubiquitin specific peptidase 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP4, Length 3,126 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-201ENST00000265560 SH2D2AQ9NP31 389 aa14.81□□□□□ -0.04
USP4-201ENST00000265560 NDUFB11Q9NX14 153 aa14.81□□□□□ -0.04
USP4-201ENST00000265560 IGF2RP11717 2491 aa14.81□□□□□ -0.04
USP4-201ENST00000265560 OR2M5A3KFT3 312 aa14.81□□□□□ -0.04
USP4-201ENST00000265560 PSKH1P11801 424 aa14.81□□□□□ -0.04
USP4-201ENST00000265560 FABP5Q01469 135 aa14.81□□□□□ -0.04
USP4-201ENST00000265560 H1FNTQ75WM6 255 aaPredicted RBP14.81□□□□□ -0.04
USP4-201ENST00000265560 ADAMTS14Q8WXS8 1223 aa14.81□□□□□ -0.04
USP4-201ENST00000265560 C6orf62Q9GZU0 229 aaPredicted RBP14.81□□□□□ -0.04
USP4-201ENST00000265560 IGLV3-32A0A0A0MS00 114 aa14.81□□□□□ -0.04
USP4-201ENST00000265560 A0A1W2PPK0 400 aa14.81□□□□□ -0.04
USP4-201ENST00000265560 A0A1W2PQ72 361 aa14.81□□□□□ -0.04
USP4-201ENST00000265560 FAM47E-STBD1D6RA91 191 aa14.81□□□□□ -0.04
USP4-201ENST00000265560 CLPXO76031 633 aa14.81□□□□□ -0.04
USP4-201ENST00000265560 CTLA4P16410 223 aa14.81□□□□□ -0.04
USP4-201ENST00000265560 CPEP16870 476 aa14.81□□□□□ -0.04
USP4-201ENST00000265560 RPL27P61353 136 aaKnown RBP14.81□□□□□ -0.04
USP4-201ENST00000265560 ABHD17BQ5VST6 288 aa14.81□□□□□ -0.04
USP4-201ENST00000265560 CARD17Q5XLA6 110 aa14.81□□□□□ -0.04
USP4-201ENST00000265560 C3orf33Q6P1S2 294 aa14.81□□□□□ -0.04
USP4-201ENST00000265560 PLXDC2Q6UX71 529 aa14.81□□□□□ -0.04
USP4-201ENST00000265560 BTLAQ7Z6A9 289 aa14.81□□□□□ -0.04
USP4-201ENST00000265560 SNX29P2Q8IUI4 249 aa14.81□□□□□ -0.04
USP4-201ENST00000265560 SLC35F2Q8IXU6 374 aa14.81□□□□□ -0.04
USP4-201ENST00000265560 OR13C5Q8NGS8 318 aa14.81□□□□□ -0.04
USP4-201ENST00000265560 UFD1Q92890 307 aa14.81□□□□□ -0.04
USP4-201ENST00000265560 SERINC1Q9NRX5 453 aa14.81□□□□□ -0.04
USP4-201ENST00000265560 SNTG1Q9NSN8 517 aa14.81□□□□□ -0.04
USP4-201ENST00000265560 GNG8Q9UK08 70 aa14.81□□□□□ -0.04
USP4-201ENST00000265560 SEC14L5O43304 696 aa14.8□□□□□ -0.04
USP4-201ENST00000265560 RPP14O95059 124 aaKnown RBP14.8□□□□□ -0.04
USP4-201ENST00000265560 WDPCPO95876 746 aa14.8□□□□□ -0.04
USP4-201ENST00000265560 OPRL1P41146 370 aa14.8□□□□□ -0.04
USP4-201ENST00000265560 MADCAM1Q13477 382 aa14.8□□□□□ -0.04
USP4-201ENST00000265560 GALEQ14376 348 aa14.8□□□□□ -0.04
USP4-201ENST00000265560 ANKDD1AQ495B1 522 aa14.8□□□□□ -0.04
USP4-201ENST00000265560 SLC35D2Q76EJ3 337 aa14.8□□□□□ -0.04
USP4-201ENST00000265560 DPY19L4Q7Z388 723 aa14.8□□□□□ -0.04
USP4-201ENST00000265560 RAB43Q86YS6 212 aa14.8□□□□□ -0.04
USP4-201ENST00000265560 KCNS3Q9BQ31 491 aa14.8□□□□□ -0.04
USP4-201ENST00000265560 TRIM3O75382 744 aaPredicted RBP14.8□□□□□ -0.04
USP4-201ENST00000265560 IGF2P01344 180 aa14.8□□□□□ -0.04
USP4-201ENST00000265560 RPS19P39019 145 aaKnown RBP14.8□□□□□ -0.04
USP4-201ENST00000265560 BMXP51813 675 aa14.8□□□□□ -0.04
USP4-201ENST00000265560 FAM27D1Q5T7N8 215 aa14.8□□□□□ -0.04
USP4-201ENST00000265560 RNLSQ5VYX0 342 aa14.8□□□□□ -0.04
USP4-201ENST00000265560 VASNQ6EMK4 673 aa14.8□□□□□ -0.04
USP4-201ENST00000265560 C19orf48Q6RUI8 117 aa14.8□□□□□ -0.04
USP4-201ENST00000265560 ZNF248Q8NDW4 579 aa14.8□□□□□ -0.04
USP4-201ENST00000265560 OR6N2Q8NGY6 317 aa14.8□□□□□ -0.04
USP4-201ENST00000265560 MFSD8Q8NHS3 518 aa14.8□□□□□ -0.04
USP4-201ENST00000265560 SNX33Q8WV41 574 aa14.8□□□□□ -0.04
USP4-201ENST00000265560 FRMD6Q96NE9 622 aa14.8□□□□□ -0.04
USP4-201ENST00000265560 ASCL3Q9NQ33 180 aa14.8□□□□□ -0.04
USP4-201ENST00000265560 ACOXLQ9NUZ1 547 aa14.8□□□□□ -0.04
USP4-201ENST00000265560 BABAM2Q9NXR7 383 aa14.8□□□□□ -0.04
USP4-201ENST00000265560 MRPL39Q9NYK5 338 aaKnown RBP14.8□□□□□ -0.04
USP4-201ENST00000265560 IGKV1D-43A0A0B4J1Z2 117 aa14.79□□□□□ -0.04
USP4-201ENST00000265560 SULT2B1O00204 365 aa14.79□□□□□ -0.04
USP4-201ENST00000265560 SNPHO15079 494 aa14.79□□□□□ -0.04
USP4-201ENST00000265560 IDH3BO43837 385 aa14.79□□□□□ -0.04
USP4-201ENST00000265560 SPINK2P20155 84 aa14.79□□□□□ -0.04
USP4-201ENST00000265560 LGALS3BPQ08380 585 aa14.79□□□□□ -0.04
USP4-201ENST00000265560 WIPI1Q5MNZ9 446 aaPredicted RBP14.79□□□□□ -0.04
USP4-201ENST00000265560 H3F3CQ6NXT2 135 aa14.79□□□□□ -0.04
USP4-201ENST00000265560 TMPRSS11AQ6ZMR5 421 aa14.79□□□□□ -0.04
USP4-201ENST00000265560 LRRC69Q6ZNQ3 347 aa14.79□□□□□ -0.04
USP4-201ENST00000265560 OR14L1PQ8NHC6 308 aa14.79□□□□□ -0.04
USP4-201ENST00000265560 SGCZQ96LD1 299 aa14.79□□□□□ -0.04
USP4-201ENST00000265560 UCN2Q96RP3 112 aa14.79□□□□□ -0.04
USP4-201ENST00000265560 SLIRPQ9GZT3 109 aaKnown RBP14.79□□□□□ -0.04
USP4-201ENST00000265560 TXNIPQ9H3M7 391 aa14.79□□□□□ -0.04
USP4-201ENST00000265560 CHST11Q9NPF2 352 aa14.79□□□□□ -0.04
USP4-201ENST00000265560 TXNL4BQ9NX01 149 aaKnown RBP14.79□□□□□ -0.04
USP4-201ENST00000265560 CORINQ9Y5Q5 1042 aa14.79□□□□□ -0.04
USP4-201ENST00000265560 A0A1B0GTH9 108 aa14.79□□□□□ -0.04
USP4-201ENST00000265560 A0A1W2PRG6 482 aa14.79□□□□□ -0.04
USP4-201ENST00000265560 GLCEO94923 617 aa14.79□□□□□ -0.04
USP4-201ENST00000265560 RENP00797 406 aa14.79□□□□□ -0.04
USP4-201ENST00000265560 CLDN20P56880 219 aa14.79□□□□□ -0.04
USP4-201ENST00000265560 CAMK2DQ13557 499 aa14.79□□□□□ -0.04
USP4-201ENST00000265560 TMEM225Q6GV28 225 aa14.79□□□□□ -0.04
USP4-201ENST00000265560 TMPRSS7Q7RTY8 843 aa14.79□□□□□ -0.04
USP4-201ENST00000265560 TMPRSS12Q86WS5 348 aa14.79□□□□□ -0.04
USP4-201ENST00000265560 DTX1Q86Y01 620 aa14.79□□□□□ -0.04
USP4-201ENST00000265560 EXD3Q8N9H8 876 aa14.79□□□□□ -0.04
USP4-201ENST00000265560 CLEC1AQ8NC01 280 aa14.79□□□□□ -0.04
USP4-201ENST00000265560 NSMAFQ92636 917 aa14.79□□□□□ -0.04
USP4-201ENST00000265560 DLL3Q9NYJ7 618 aa14.79□□□□□ -0.04
USP4-201ENST00000265560 STUB1Q9UNE7 303 aa14.79□□□□□ -0.04
USP4-201ENST00000265560 SF3B6Q9Y3B4 125 aaKnown RBP14.79□□□□□ -0.04
USP4-201ENST00000265560 PRSS37A4D1T9 235 aa14.79□□□□□ -0.04
USP4-201ENST00000265560 NPIPA5E9PKD4 350 aa14.79□□□□□ -0.04
USP4-201ENST00000265560 MAGEB1P43366 347 aa14.79□□□□□ -0.04
USP4-201ENST00000265560 AMELYQ99218 206 aa14.79□□□□□ -0.04
USP4-201ENST00000265560 SACM1LQ9NTJ5 587 aa14.79□□□□□ -0.04
USP4-201ENST00000265560 NPIPA1Q9UND3 350 aa14.79□□□□□ -0.04
USP4-201ENST00000265560 SSR3Q9UNL2 185 aa14.79□□□□□ -0.04
USP4-201ENST00000265560 CAB39Q9Y376 341 aaPredicted RBP14.79□□□□□ -0.04
USP4-201ENST00000265560 FREM1Q5H8C1 2179 aa14.79□□□□□ -0.04
Retrieved 100 of 20,778 RNA–protein pairs in 33.7 ms