RNA–Protein interactions for RNA: ENST00000263630.12

CCDC88A-201, Transcript of coiled-coil domain containing 88A, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CCDC88A, Length 9,667 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-201ENST00000263630 ADPRHP54922 357 aa12.96□□□□□ -0.33
CCDC88A-201ENST00000263630 ELLP55199 621 aaPredicted RBP12.96□□□□□ -0.33
CCDC88A-201ENST00000263630 RING1Q06587 406 aa12.96□□□□□ -0.33
CCDC88A-201ENST00000263630 KIR2DS3Q14952 304 aa12.96□□□□□ -0.33
CCDC88A-201ENST00000263630 MAMDC4Q6UXC1 1216 aa12.96□□□□□ -0.33
CCDC88A-201ENST00000263630 C15orf52Q6ZUT6 534 aaKnown RBP12.96□□□□□ -0.33
CCDC88A-201ENST00000263630 TVP23CQ96ET8 276 aa12.96□□□□□ -0.33
CCDC88A-201ENST00000263630 IMP4Q96G21 291 aaKnown RBP12.96□□□□□ -0.33
CCDC88A-201ENST00000263630 OBP2AQ9NY56 170 aa12.96□□□□□ -0.33
CCDC88A-201ENST00000263630 TIMM9Q9Y5J7 89 aa12.96□□□□□ -0.33
CCDC88A-201ENST00000263630 ASCC3Q8N3C0 2202 aaKnown RBP12.96□□□□□ -0.33
CCDC88A-201ENST00000263630 SDHDO14521 159 aa12.96□□□□□ -0.33
CCDC88A-201ENST00000263630 LBHQ53QV2 105 aaPredicted RBP12.96□□□□□ -0.33
CCDC88A-201ENST00000263630 ATP13A2Q9NQ11 1180 aa12.96□□□□□ -0.33
CCDC88A-201ENST00000263630 MN1Q10571 1320 aaPredicted RBP12.96□□□□□ -0.33
CCDC88A-201ENST00000263630 DDX31Q9H8H2 851 aaKnown RBP12.96□□□□□ -0.34
CCDC88A-201ENST00000263630 NOSIPQ9Y314 301 aaKnown RBP12.96□□□□□ -0.34
CCDC88A-201ENST00000263630 ZNF816-ZNF321PA0A0X1KG74 233 aa12.96□□□□□ -0.34
CCDC88A-201ENST00000263630 ACRP10323 421 aa12.96□□□□□ -0.34
CCDC88A-201ENST00000263630 OPRD1P41143 372 aa12.96□□□□□ -0.34
CCDC88A-201ENST00000263630 OR10A3P58181 314 aa12.96□□□□□ -0.34
CCDC88A-201ENST00000263630 USP53Q70EK8 1073 aa12.96□□□□□ -0.34
CCDC88A-201ENST00000263630 EMG1Q92979 244 aaKnown RBP12.96□□□□□ -0.34
CCDC88A-201ENST00000263630 AP5S1Q9NUS5 200 aa12.96□□□□□ -0.34
CCDC88A-201ENST00000263630 ZNF691Q5VV52 312 aa12.96□□□□□ -0.34
CCDC88A-201ENST00000263630 MOCOSQ96EN8 888 aa12.96□□□□□ -0.34
CCDC88A-201ENST00000263630 NUP214P35658 2090 aaPredicted RBP12.96□□□□□ -0.34
CCDC88A-201ENST00000263630 KIR2DS1A0A191URI9 304 aa12.95□□□□□ -0.34
CCDC88A-201ENST00000263630 OR2T7P0C7T2 308 aa12.95□□□□□ -0.34
CCDC88A-201ENST00000263630 NPY1RP25929 384 aa12.95□□□□□ -0.34
CCDC88A-201ENST00000263630 KIR2DS4P43632 304 aa12.95□□□□□ -0.34
CCDC88A-201ENST00000263630 KIR2DS1Q14954 304 aa12.95□□□□□ -0.34
CCDC88A-201ENST00000263630 PIGLQ9Y2B2 252 aa12.95□□□□□ -0.34
CCDC88A-201ENST00000263630 OR7C2O60412 319 aa12.95□□□□□ -0.34
CCDC88A-201ENST00000263630 CYC1P08574 325 aa12.95□□□□□ -0.34
CCDC88A-201ENST00000263630 OR2A1Q8NGT9 310 aa12.95□□□□□ -0.34
CCDC88A-201ENST00000263630 MRPS28Q9Y2Q9 187 aaKnown RBP12.95□□□□□ -0.34
CCDC88A-201ENST00000263630 KIAA0100Q14667 2235 aaKnown RBP12.95□□□□□ -0.34
CCDC88A-201ENST00000263630 RHOUQ7L0Q8 258 aa12.95□□□□□ -0.34
CCDC88A-201ENST00000263630 STACQ99469 402 aa12.95□□□□□ -0.34
CCDC88A-201ENST00000263630 AAMDCQ9H7C9 122 aa12.95□□□□□ -0.34
CCDC88A-201ENST00000263630 OSGIN1Q9UJX0 560 aa12.95□□□□□ -0.34
CCDC88A-201ENST00000263630 LOC100289279A0A1B0GTE1 492 aa12.95□□□□□ -0.34
CCDC88A-201ENST00000263630 CST6Q15828 149 aa12.95□□□□□ -0.34
CCDC88A-201ENST00000263630 IAH1Q2TAA2 248 aaPredicted RBP12.95□□□□□ -0.34
CCDC88A-201ENST00000263630 ETFRF1Q6IPR1 90 aa12.95□□□□□ -0.34
CCDC88A-201ENST00000263630 C17orf107Q6ZR85 190 aa12.95□□□□□ -0.34
CCDC88A-201ENST00000263630 OR13D1Q8NGV5 346 aa12.95□□□□□ -0.34
CCDC88A-201ENST00000263630 NETO1Q8TDF5 533 aa12.95□□□□□ -0.34
CCDC88A-201ENST00000263630 C20orf24Q9BUV8 137 aa12.95□□□□□ -0.34
CCDC88A-201ENST00000263630 UBL3O95164 117 aa12.95□□□□□ -0.34
CCDC88A-201ENST00000263630 SEMA4FO95754 770 aa12.95□□□□□ -0.34
CCDC88A-201ENST00000263630 HNRNPA1P09651 372 aaKnown RBP eCLIP12.95□□□□□ -0.34
CCDC88A-201ENST00000263630 POU3F1Q03052 451 aaPredicted RBP12.95□□□□□ -0.34
CCDC88A-201ENST00000263630 REC114Q7Z4M0 266 aa12.95□□□□□ -0.34
CCDC88A-201ENST00000263630 PDZD3Q86UT5 571 aa12.95□□□□□ -0.34
CCDC88A-201ENST00000263630 SRMP19623 302 aa12.95□□□□□ -0.34
CCDC88A-201ENST00000263630 OR10AD1Q8NGE0 317 aa12.95□□□□□ -0.34
CCDC88A-201ENST00000263630 CIB3Q96Q77 187 aaPredicted RBP12.95□□□□□ -0.34
CCDC88A-201ENST00000263630 WDR76Q9H967 626 aa12.95□□□□□ -0.34
CCDC88A-201ENST00000263630 SOD2P04179 222 aa12.95□□□□□ -0.34
CCDC88A-201ENST00000263630 REEP5Q00765 189 aa12.95□□□□□ -0.34
CCDC88A-201ENST00000263630 HTR4Q13639 388 aa12.95□□□□□ -0.34
CCDC88A-201ENST00000263630 MFSD6LQ8IWD5 586 aa12.95□□□□□ -0.34
CCDC88A-201ENST00000263630 FBXO8Q9NRD0 319 aa12.95□□□□□ -0.34
CCDC88A-201ENST00000263630 BMPR1BO00238 502 aa12.95□□□□□ -0.34
CCDC88A-201ENST00000263630 GALR2O43603 387 aaPredicted RBP12.95□□□□□ -0.34
CCDC88A-201ENST00000263630 BMPR1AP36894 532 aa12.95□□□□□ -0.34
CCDC88A-201ENST00000263630 LMNTD1Q8N9Z9 388 aa12.95□□□□□ -0.34
CCDC88A-201ENST00000263630 DCAF13Q9NV06 445 aaKnown RBP12.95□□□□□ -0.34
CCDC88A-201ENST00000263630 MRPL22Q9NWU5 206 aaKnown RBP12.95□□□□□ -0.34
CCDC88A-201ENST00000263630 SNRNP200O75643 2136 aaKnown RBP12.94□□□□□ -0.34
CCDC88A-201ENST00000263630 GCGP01275 180 aa12.94□□□□□ -0.34
CCDC88A-201ENST00000263630 APEX1P27695 318 aaKnown RBP12.94□□□□□ -0.34
CCDC88A-201ENST00000263630 HENMT1Q5T8I9 393 aaKnown RBP12.94□□□□□ -0.34
CCDC88A-201ENST00000263630 LYSMD4Q5XG99 296 aa12.94□□□□□ -0.34
CCDC88A-201ENST00000263630 FAAP24Q9BTP7 215 aa12.94□□□□□ -0.34
CCDC88A-201ENST00000263630 FZD8Q9H461 694 aa12.94□□□□□ -0.34
CCDC88A-201ENST00000263630 ZNF727A8MUV8 499 aa12.94□□□□□ -0.34
CCDC88A-201ENST00000263630 ST8SIA5O15466 376 aa12.94□□□□□ -0.34
CCDC88A-201ENST00000263630 PMP2P02689 132 aa12.94□□□□□ -0.34
CCDC88A-201ENST00000263630 GABRB3P28472 473 aa12.94□□□□□ -0.34
CCDC88A-201ENST00000263630 ZNF93P35789 620 aaPredicted RBP12.94□□□□□ -0.34
CCDC88A-201ENST00000263630 OXA1LQ15070 435 aa12.94□□□□□ -0.34
CCDC88A-201ENST00000263630 PODNL1Q6PEZ8 512 aa12.94□□□□□ -0.34
CCDC88A-201ENST00000263630 ADGRE4PQ86SQ3 457 aa12.94□□□□□ -0.34
CCDC88A-201ENST00000263630 ZNF845Q96IR2 970 aaPredicted RBP12.94□□□□□ -0.34
CCDC88A-201ENST00000263630 CSF3P09919 207 aa12.94□□□□□ -0.34
CCDC88A-201ENST00000263630 HAPLN1P10915 354 aaPredicted RBP12.94□□□□□ -0.34
CCDC88A-201ENST00000263630 SOX18P35713 384 aa12.94□□□□□ -0.34
CCDC88A-201ENST00000263630 AQP7P3A6NL99 342 aa12.94□□□□□ -0.34
CCDC88A-201ENST00000263630 ABHD16AO95870 558 aa12.94□□□□□ -0.34
CCDC88A-201ENST00000263630 NTSR1P30989 418 aa12.94□□□□□ -0.34
CCDC88A-201ENST00000263630 SPINT3P49223 89 aa12.94□□□□□ -0.34
CCDC88A-201ENST00000263630 TMEM184AQ6ZMB5 413 aa12.94□□□□□ -0.34
CCDC88A-201ENST00000263630 NSUN5Q96P11 429 aaKnown RBP12.94□□□□□ -0.34
CCDC88A-201ENST00000263630 SLC17A9Q9BYT1 436 aa12.94□□□□□ -0.34
CCDC88A-201ENST00000263630 CBLCQ9ULV8 474 aa12.94□□□□□ -0.34
CCDC88A-201ENST00000263630 C5orf52A6NGY3 159 aa12.94□□□□□ -0.34
CCDC88A-201ENST00000263630 DCTN6O00399 190 aa12.94□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 47.1 ms