RNA–Protein interactions for RNA: ENST00000639002.1

CD44-239, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 1 (best) BASIC

Gene CD44, Length 528 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-239ENST00000639002 S100A9P06702 114 aaKnown RBP1.78□□□□□ -2.12
CD44-239ENST00000639002 H2BFMP0C1H6 154 aa1.78□□□□□ -2.12
CD44-239ENST00000639002 RPA2P15927 270 aa1.78□□□□□ -2.12
CD44-239ENST00000639002 GALP22466 123 aa1.78□□□□□ -2.12
CD44-239ENST00000639002 BTCP35070 178 aa1.78□□□□□ -2.12
CD44-239ENST00000639002 CCT6AP40227 531 aaKnown RBP1.78□□□□□ -2.12
CD44-239ENST00000639002 KIR2DS4P43632 304 aa1.78□□□□□ -2.12
CD44-239ENST00000639002 PRRX1P54821 245 aa1.78□□□□□ -2.12
CD44-239ENST00000639002 CACNG7P62955 275 aa1.78□□□□□ -2.12
CD44-239ENST00000639002 MEF2BQ02080 365 aaPredicted RBP1.78□□□□□ -2.12
CD44-239ENST00000639002 GBE1Q04446 702 aa1.78□□□□□ -2.12
CD44-239ENST00000639002 PJVKQ0ZLH3 352 aa1.78□□□□□ -2.12
CD44-239ENST00000639002 TRIM16LQ309B1 348 aa1.78□□□□□ -2.12
CD44-239ENST00000639002 CCDC152Q4G0S7 254 aa1.78□□□□□ -2.12
CD44-239ENST00000639002 ZYG11AQ6WRX3 759 aa1.78□□□□□ -2.12
CD44-239ENST00000639002 UTS2BQ765I0 119 aa1.78□□□□□ -2.12
CD44-239ENST00000639002 IQCF2Q8IXL9 164 aa1.78□□□□□ -2.12
CD44-239ENST00000639002 ZNF679Q8IYX0 411 aa1.78□□□□□ -2.12
CD44-239ENST00000639002 RDH10Q8IZV5 341 aa1.78□□□□□ -2.12
CD44-239ENST00000639002 KIR3DL3Q8N743 410 aa1.78□□□□□ -2.12
CD44-239ENST00000639002 NECAB1Q8N987 351 aa1.78□□□□□ -2.12
CD44-239ENST00000639002 OR9G1Q8NH87 305 aa1.78□□□□□ -2.12
CD44-239ENST00000639002 TRMT10AQ8TBZ6 339 aaKnown RBP1.78□□□□□ -2.12
CD44-239ENST00000639002 AGR3Q8TD06 166 aa1.78□□□□□ -2.12
CD44-239ENST00000639002 RAET1EQ8TD07 263 aa1.78□□□□□ -2.12
CD44-239ENST00000639002 DTX3LQ8TDB6 740 aa1.78□□□□□ -2.12
CD44-239ENST00000639002 ZFP90Q8TF47 636 aa1.78□□□□□ -2.12
CD44-239ENST00000639002 RLN3Q8WXF3 142 aa1.78□□□□□ -2.12
CD44-239ENST00000639002 ST8SIA1Q92185 356 aa1.78□□□□□ -2.12
CD44-239ENST00000639002 RAPGEF5Q92565 580 aa1.78□□□□□ -2.12
CD44-239ENST00000639002 FBXO32Q969P5 355 aa1.78□□□□□ -2.12
CD44-239ENST00000639002 C7orf34Q96L11 122 aa1.78□□□□□ -2.12
CD44-239ENST00000639002 SLC39A3Q9BRY0 314 aa1.78□□□□□ -2.12
CD44-239ENST00000639002 TUBGCP2Q9BSJ2 902 aa1.78□□□□□ -2.12
CD44-239ENST00000639002 KRTAP4-1Q9BYQ7 146 aa1.78□□□□□ -2.12
CD44-239ENST00000639002 FAM192AQ9GZU8 254 aa1.78□□□□□ -2.12
CD44-239ENST00000639002 RAB33BQ9H082 229 aa1.78□□□□□ -2.12
CD44-239ENST00000639002 SPNS1Q9H2V7 528 aa1.78□□□□□ -2.12
CD44-239ENST00000639002 CHMP4BQ9H444 224 aaKnown RBP1.78□□□□□ -2.12
CD44-239ENST00000639002 RPH3ALQ9UNE2 315 aa1.78□□□□□ -2.12
CD44-239ENST00000639002 COPS3Q9UNS2 423 aa1.78□□□□□ -2.12
CD44-239ENST00000639002 GSTK1Q9Y2Q3 226 aa1.78□□□□□ -2.12
CD44-239ENST00000639002 ASB3Q9Y575 518 aa1.78□□□□□ -2.12
CD44-239ENST00000639002 WDR19Q8NEZ3 1342 aa1.77□□□□□ -2.13
CD44-239ENST00000639002 BOLA2-SMG1P6H3BVE0 249 aa1.77□□□□□ -2.13
CD44-239ENST00000639002 K7EQM0 130 aa1.77□□□□□ -2.13
CD44-239ENST00000639002 M0QX08 132 aa1.77□□□□□ -2.13
CD44-239ENST00000639002 CASC3O15234 703 aaKnown RBP1.77□□□□□ -2.13
CD44-239ENST00000639002 B4GALT5O43286 388 aa1.77□□□□□ -2.13
CD44-239ENST00000639002 SPOPO43791 374 aa1.77□□□□□ -2.13
CD44-239ENST00000639002 SCGNO76038 276 aa1.77□□□□□ -2.13
CD44-239ENST00000639002 RCBTB2O95199 551 aa1.77□□□□□ -2.13
CD44-239ENST00000639002 AGTP01019 485 aa1.77□□□□□ -2.13
CD44-239ENST00000639002 IGKV1D-16P01601 117 aa1.77□□□□□ -2.13
CD44-239ENST00000639002 ASGR1P07306 291 aa1.77□□□□□ -2.13
CD44-239ENST00000639002 GZMAP12544 262 aa1.77□□□□□ -2.13
CD44-239ENST00000639002 NCF2P19878 526 aaPredicted RBP1.77□□□□□ -2.13
CD44-239ENST00000639002 PGCP20142 388 aa1.77□□□□□ -2.13
CD44-239ENST00000639002 PTGDSP41222 190 aa1.77□□□□□ -2.13
CD44-239ENST00000639002 VDAC2P45880 294 aaPredicted RBP1.77□□□□□ -2.13
CD44-239ENST00000639002 CEBPDP49716 269 aaPredicted RBP1.77□□□□□ -2.13
CD44-239ENST00000639002 ETV1P50549 477 aa1.77□□□□□ -2.13
CD44-239ENST00000639002 ACTR3P61158 418 aa1.77□□□□□ -2.13
CD44-239ENST00000639002 RPS14P62263 151 aaKnown RBP1.77□□□□□ -2.13
CD44-239ENST00000639002 EWSR1Q01844 656 aaKnown RBP eCLIP1.77□□□□□ -2.13
CD44-239ENST00000639002 CNTN2Q02246 1040 aa1.77□□□□□ -2.13
CD44-239ENST00000639002 SPAG1Q07617 926 aa1.77□□□□□ -2.13
CD44-239ENST00000639002 NCBP1Q09161 790 aaKnown RBP1.77□□□□□ -2.13
CD44-239ENST00000639002 PLD1Q13393 1074 aa1.77□□□□□ -2.13
CD44-239ENST00000639002 PDK3Q15120 406 aa1.77□□□□□ -2.13
CD44-239ENST00000639002 SSX2Q16385 188 aa1.77□□□□□ -2.13
CD44-239ENST00000639002 PDK4Q16654 411 aa1.77□□□□□ -2.13
CD44-239ENST00000639002 HADHQ16836 314 aaKnown RBP1.77□□□□□ -2.13
CD44-239ENST00000639002 METAP1DQ6UB28 335 aaPredicted RBP1.77□□□□□ -2.13
CD44-239ENST00000639002 CES3Q6UWW8 571 aa1.77□□□□□ -2.13
CD44-239ENST00000639002 ZNF571Q7Z3V5 609 aaPredicted RBP1.77□□□□□ -2.13
CD44-239ENST00000639002 EGFL6Q8IUX8 553 aa1.77□□□□□ -2.13
CD44-239ENST00000639002 DHRSXQ8N5I4 330 aa1.77□□□□□ -2.13
CD44-239ENST00000639002 CLDN19Q8N6F1 224 aa1.77□□□□□ -2.13
CD44-239ENST00000639002 AKR7LQ8NHP1 331 aa1.77□□□□□ -2.13
CD44-239ENST00000639002 SEC22AQ96IW7 307 aa1.77□□□□□ -2.13
CD44-239ENST00000639002 SENP8Q96LD8 212 aa1.77□□□□□ -2.13
CD44-239ENST00000639002 C12orf66Q96MD2 445 aa1.77□□□□□ -2.13
CD44-239ENST00000639002 ZNF607Q96SK3 696 aa1.77□□□□□ -2.13
CD44-239ENST00000639002 RIT2Q99578 217 aa1.77□□□□□ -2.13
CD44-239ENST00000639002 OMDQ99983 421 aa1.77□□□□□ -2.13
CD44-239ENST00000639002 P2RY13Q9BPV8 354 aa1.77□□□□□ -2.13
CD44-239ENST00000639002 PAIP2Q9BPZ3 127 aaKnown RBP1.77□□□□□ -2.13
CD44-239ENST00000639002 ZSCAN5AQ9BUG6 496 aa1.77□□□□□ -2.13
CD44-239ENST00000639002 EDEM2Q9BV94 578 aa1.77□□□□□ -2.13
CD44-239ENST00000639002 ROGDIQ9GZN7 287 aa1.77□□□□□ -2.13
CD44-239ENST00000639002 IQCGQ9H095 443 aaKnown RBP1.77□□□□□ -2.13
CD44-239ENST00000639002 CRLF2Q9HC73 371 aa1.77□□□□□ -2.13
CD44-239ENST00000639002 NUDT15Q9NV35 164 aa1.77□□□□□ -2.13
CD44-239ENST00000639002 HOXC10Q9NYD6 342 aa1.77□□□□□ -2.13
CD44-239ENST00000639002 ZNF226Q9NYT6 803 aa1.77□□□□□ -2.13
CD44-239ENST00000639002 CLCF1Q9UBD9 225 aa1.77□□□□□ -2.13
CD44-239ENST00000639002 RNF14Q9UBS8 474 aa1.77□□□□□ -2.13
CD44-239ENST00000639002 PSME2Q9UL46 239 aa1.77□□□□□ -2.13
CD44-239ENST00000639002 CHTOPQ9Y3Y2 248 aaKnown RBP1.77□□□□□ -2.13
Retrieved 100 of 20,778 RNA–protein pairs in 27.6 ms