RNA–Protein interactions for RNA: ENST00000637699.1

CLN3-262, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,228 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-262ENST00000637699 SLC9B1Q4ZJI4 515 aa16.68■□□□□ 0.26
CLN3-262ENST00000637699 ZNF311Q5JNZ3 666 aa16.68■□□□□ 0.26
CLN3-262ENST00000637699 FAHD2BQ6P2I3 314 aaPredicted RBP16.68■□□□□ 0.26
CLN3-262ENST00000637699 LRP11Q86VZ4 500 aa16.68■□□□□ 0.26
CLN3-262ENST00000637699 TMEM123Q8N131 208 aa16.68■□□□□ 0.26
CLN3-262ENST00000637699 RDH5Q92781 318 aa16.68■□□□□ 0.26
CLN3-262ENST00000637699 FAHD2AQ96GK7 314 aa16.68■□□□□ 0.26
CLN3-262ENST00000637699 HAO1Q9UJM8 370 aa16.68■□□□□ 0.26
CLN3-262ENST00000637699 FZR1Q9UM11 496 aa16.68■□□□□ 0.26
CLN3-262ENST00000637699 GPR45Q9Y5Y3 372 aa16.68■□□□□ 0.26
CLN3-262ENST00000637699 MGAM2Q2M2H8 2515 aa16.67■□□□□ 0.26
CLN3-262ENST00000637699 A0A0G2JPF8 293 aa16.67■□□□□ 0.26
CLN3-262ENST00000637699 HNRNPCL2B2RXH8 293 aa16.67■□□□□ 0.26
CLN3-262ENST00000637699 HNRNPCL3B7ZW38 293 aa16.67■□□□□ 0.26
CLN3-262ENST00000637699 SDHDO14521 159 aa16.67■□□□□ 0.26
CLN3-262ENST00000637699 HNRNPCL1O60812 293 aaKnown RBP16.67■□□□□ 0.26
CLN3-262ENST00000637699 ANP32DO95626 131 aa16.67■□□□□ 0.26
CLN3-262ENST00000637699 HNRNPCL4P0DMR1 293 aa16.67■□□□□ 0.26
CLN3-262ENST00000637699 ACHEP22303 614 aa16.67■□□□□ 0.26
CLN3-262ENST00000637699 GRPRP30550 384 aa16.67■□□□□ 0.26
CLN3-262ENST00000637699 AQP5P55064 265 aa16.67■□□□□ 0.26
CLN3-262ENST00000637699 STX3Q13277 289 aa16.67■□□□□ 0.26
CLN3-262ENST00000637699 SCGB2A2Q13296 93 aa16.67■□□□□ 0.26
CLN3-262ENST00000637699 GKAP1Q5VSY0 366 aaPredicted RBP16.67■□□□□ 0.26
CLN3-262ENST00000637699 H1FNTQ75WM6 255 aaPredicted RBP16.67■□□□□ 0.26
CLN3-262ENST00000637699 EMC6Q9BV81 110 aa16.67■□□□□ 0.26
CLN3-262ENST00000637699 RACGAP1Q9H0H5 632 aa16.67■□□□□ 0.26
CLN3-262ENST00000637699 TPT1P8Q9HAU6 139 aa16.67■□□□□ 0.26
CLN3-262ENST00000637699 MYEF2Q9P2K5 600 aaKnown RBP16.67■□□□□ 0.26
CLN3-262ENST00000637699 RPS6KB2Q9UBS0 482 aa16.67■□□□□ 0.26
CLN3-262ENST00000637699 PCDHB10Q9UN67 800 aa16.67■□□□□ 0.26
CLN3-262ENST00000637699 IFT52Q9Y366 437 aa16.67■□□□□ 0.26
CLN3-262ENST00000637699 TMEM247A6NEH6 219 aa16.66■□□□□ 0.26
CLN3-262ENST00000637699 PPIHO43447 177 aaKnown RBP16.66■□□□□ 0.26
CLN3-262ENST00000637699 TRAF3IP2O43734 574 aaPredicted RBP16.66■□□□□ 0.26
CLN3-262ENST00000637699 AKAP8O43823 692 aaKnown RBP16.66■□□□□ 0.26
CLN3-262ENST00000637699 OR2T1O43869 369 aa16.66■□□□□ 0.26
CLN3-262ENST00000637699 TFP02787 698 aa16.66■□□□□ 0.26
CLN3-262ENST00000637699 GAAP10253 952 aa16.66■□□□□ 0.26
CLN3-262ENST00000637699 ZNF35P13682 527 aa16.66■□□□□ 0.26
CLN3-262ENST00000637699 GLRXP35754 106 aa16.66■□□□□ 0.26
CLN3-262ENST00000637699 COMPP49747 757 aaPredicted RBP16.66■□□□□ 0.26
CLN3-262ENST00000637699 GTDC1Q4AE62 458 aa16.66■□□□□ 0.26
CLN3-262ENST00000637699 FAM69AQ5T7M9 428 aa16.66■□□□□ 0.26
CLN3-262ENST00000637699 ZNF813Q6ZN06 617 aa16.66■□□□□ 0.26
CLN3-262ENST00000637699 CROCCP2Q86T23 111 aa16.66■□□□□ 0.26
CLN3-262ENST00000637699 C20orf196Q8IYI0 205 aa16.66■□□□□ 0.26
CLN3-262ENST00000637699 KIRREL3Q8IZU9 778 aa16.66■□□□□ 0.26
CLN3-262ENST00000637699 OR51F2Q8NH61 342 aa16.66■□□□□ 0.26
CLN3-262ENST00000637699 YIPF5Q969M3 257 aa16.66■□□□□ 0.26
CLN3-262ENST00000637699 ZMYND19Q96E35 227 aaPredicted RBP16.66■□□□□ 0.26
CLN3-262ENST00000637699 WDR55Q9H6Y2 383 aaPredicted RBP16.66■□□□□ 0.26
CLN3-262ENST00000637699 ZNF275Q9NSD4 429 aaPredicted RBP16.66■□□□□ 0.26
CLN3-262ENST00000637699 POFUT2Q9Y2G5 429 aa16.66■□□□□ 0.26
CLN3-262ENST00000637699 TMEM89A2RUT3 159 aa16.65■□□□□ 0.26
CLN3-262ENST00000637699 HPRP00739 348 aa16.65■□□□□ 0.26
CLN3-262ENST00000637699 IL6P05231 212 aa16.65■□□□□ 0.26
CLN3-262ENST00000637699 HLA-DOBP13765 273 aa16.65■□□□□ 0.26
CLN3-262ENST00000637699 ZNF14P17017 642 aaPredicted RBP16.65■□□□□ 0.26
CLN3-262ENST00000637699 EPHA3P29320 983 aa16.65■□□□□ 0.26
CLN3-262ENST00000637699 PTDSS1P48651 473 aaKnown RBP16.65■□□□□ 0.26
CLN3-262ENST00000637699 WDR4P57081 412 aaKnown RBP16.65■□□□□ 0.26
CLN3-262ENST00000637699 TMEM33P57088 247 aa16.65■□□□□ 0.26
CLN3-262ENST00000637699 GALK2Q01415 458 aa16.65■□□□□ 0.26
CLN3-262ENST00000637699 PEG10Q86TG7 708 aaKnown RBP16.65■□□□□ 0.26
CLN3-262ENST00000637699 UEVLDQ8IX04 471 aa16.65■□□□□ 0.26
CLN3-262ENST00000637699 ANKRD42Q8N9B4 389 aa16.65■□□□□ 0.26
CLN3-262ENST00000637699 GLB1L3Q8NCI6 653 aaPredicted RBP16.65■□□□□ 0.26
CLN3-262ENST00000637699 SLC38A4Q969I6 547 aa16.65■□□□□ 0.26
CLN3-262ENST00000637699 ZNF75AQ96N20 296 aa16.65■□□□□ 0.26
CLN3-262ENST00000637699 PAIP2Q9BPZ3 127 aaKnown RBP16.65■□□□□ 0.26
CLN3-262ENST00000637699 DUSP13Q9UII6 198 aa16.65■□□□□ 0.26
CLN3-262ENST00000637699 LOC102725191A0A1B0GVB3 256 aa16.64■□□□□ 0.25
CLN3-262ENST00000637699 MS4A18H0YCH9 400 aa16.64■□□□□ 0.25
CLN3-262ENST00000637699 FZD7O75084 574 aa16.64■□□□□ 0.25
CLN3-262ENST00000637699 NCR1O76036 304 aa16.64■□□□□ 0.25
CLN3-262ENST00000637699 NUDT7P0C024 238 aa16.64■□□□□ 0.25
CLN3-262ENST00000637699 NAT2P11245 290 aa16.64■□□□□ 0.25
CLN3-262ENST00000637699 B4GALT1P15291 398 aa16.64■□□□□ 0.25
CLN3-262ENST00000637699 NQO1P15559 274 aaKnown RBP16.64■□□□□ 0.25
CLN3-262ENST00000637699 GIPRP48546 466 aa16.64■□□□□ 0.25
CLN3-262ENST00000637699 LMO4P61968 165 aa16.64■□□□□ 0.25
CLN3-262ENST00000637699 BST1Q10588 318 aa16.64■□□□□ 0.25
CLN3-262ENST00000637699 MFSD13AQ14CX5 517 aa16.64■□□□□ 0.25
CLN3-262ENST00000637699 MS4A18Q3C1V0 323 aa16.64■□□□□ 0.25
CLN3-262ENST00000637699 ALKBH6Q3KRA9 238 aa16.64■□□□□ 0.25
CLN3-262ENST00000637699 BEND6Q5SZJ8 279 aaPredicted RBP16.64■□□□□ 0.25
CLN3-262ENST00000637699 REP15Q6BDI9 236 aa16.64■□□□□ 0.25
CLN3-262ENST00000637699 C6orf89Q6UWU4 347 aa16.64■□□□□ 0.25
CLN3-262ENST00000637699 NET1Q7Z628 596 aaPredicted RBP16.64■□□□□ 0.25
CLN3-262ENST00000637699 SGMS2Q8NHU3 365 aa16.64■□□□□ 0.25
CLN3-262ENST00000637699 MGARPQ8TDB4 240 aa16.64■□□□□ 0.25
CLN3-262ENST00000637699 FAM216AQ8WUB2 273 aa16.64■□□□□ 0.25
CLN3-262ENST00000637699 VPS33AQ96AX1 596 aa16.64■□□□□ 0.25
CLN3-262ENST00000637699 TXNDC15Q96J42 360 aa16.64■□□□□ 0.25
CLN3-262ENST00000637699 IGKV1D-42A0A075B6H8 117 aa16.63■□□□□ 0.25
CLN3-262ENST00000637699 TRAV36DV7A0A075B6V5 113 aa16.63■□□□□ 0.25
CLN3-262ENST00000637699 A0A1B0GWA3 101 aa16.63■□□□□ 0.25
CLN3-262ENST00000637699 A0A1W2PPW3 197 aa16.63■□□□□ 0.25
CLN3-262ENST00000637699 TMEM120BA0PK00 339 aa16.63■□□□□ 0.25
Retrieved 100 of 20,778 RNA–protein pairs in 30.7 ms