RNA–Protein interactions for RNA: ENST00000636355.1

CLN3-248, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 975 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-248ENST00000636355 ADGRL4Q9HBW9 690 aa9.51□□□□□ -0.89
CLN3-248ENST00000636355 NDUFB11Q9NX14 153 aa9.51□□□□□ -0.89
CLN3-248ENST00000636355 RALYQ9UKM9 306 aaKnown RBP9.51□□□□□ -0.89
CLN3-248ENST00000636355 RASD1Q9Y272 281 aa9.51□□□□□ -0.89
CLN3-248ENST00000636355 NCKAP5O14513 1909 aa9.5□□□□□ -0.89
CLN3-248ENST00000636355 PRSS37A4D1T9 235 aa9.5□□□□□ -0.89
CLN3-248ENST00000636355 HSPB2A8KAH6 182 aa9.5□□□□□ -0.89
CLN3-248ENST00000636355 NPIPA5E9PKD4 350 aa9.5□□□□□ -0.89
CLN3-248ENST00000636355 H3BML4 177 aa9.5□□□□□ -0.89
CLN3-248ENST00000636355 KLRC4-KLRK1H3BQV0 150 aa9.5□□□□□ -0.89
CLN3-248ENST00000636355 H3BSA7 217 aa9.5□□□□□ -0.89
CLN3-248ENST00000636355 CCRL2O00421 344 aa9.5□□□□□ -0.89
CLN3-248ENST00000636355 ZIC3O60481 467 aa9.5□□□□□ -0.89
CLN3-248ENST00000636355 CEACAM4O75871 244 aa9.5□□□□□ -0.89
CLN3-248ENST00000636355 WDPCPO95876 746 aa9.5□□□□□ -0.89
CLN3-248ENST00000636355 HPNP05981 417 aa9.5□□□□□ -0.89
CLN3-248ENST00000636355 OR2T7P0C7T2 308 aa9.5□□□□□ -0.89
CLN3-248ENST00000636355 LIMS3P0CW19 117 aa9.5□□□□□ -0.89
CLN3-248ENST00000636355 LIMS4P0CW20 117 aa9.5□□□□□ -0.89
CLN3-248ENST00000636355 IMPDH2P12268 514 aa9.5□□□□□ -0.89
CLN3-248ENST00000636355 CD46P15529 392 aa9.5□□□□□ -0.89
CLN3-248ENST00000636355 CD53P19397 219 aa9.5□□□□□ -0.89
CLN3-248ENST00000636355 GALP22466 123 aa9.5□□□□□ -0.89
CLN3-248ENST00000636355 CRABP1P29762 137 aa9.5□□□□□ -0.89
CLN3-248ENST00000636355 DNASE1L1P49184 302 aa9.5□□□□□ -0.89
CLN3-248ENST00000636355 RGS6P49758 472 aa9.5□□□□□ -0.89
CLN3-248ENST00000636355 HSF1Q00613 529 aa9.5□□□□□ -0.89
CLN3-248ENST00000636355 MRPL28Q13084 256 aaKnown RBP9.5□□□□□ -0.89
CLN3-248ENST00000636355 GPR50Q13585 617 aa9.5□□□□□ -0.89
CLN3-248ENST00000636355 GALEQ14376 348 aa9.5□□□□□ -0.89
CLN3-248ENST00000636355 MED22Q15528 200 aa9.5□□□□□ -0.89
CLN3-248ENST00000636355 TGIF1Q15583 401 aa9.5□□□□□ -0.89
CLN3-248ENST00000636355 HSPB2Q16082 182 aa9.5□□□□□ -0.89
CLN3-248ENST00000636355 ACKR1Q16570 336 aa9.5□□□□□ -0.89
CLN3-248ENST00000636355 GXYLT1Q4G148 440 aa9.5□□□□□ -0.89
CLN3-248ENST00000636355 KLHL12Q53G59 568 aa9.5□□□□□ -0.89
CLN3-248ENST00000636355 EEF1A1P5Q5VTE0 462 aa9.5□□□□□ -0.89
CLN3-248ENST00000636355 C1QL3Q5VWW1 255 aa9.5□□□□□ -0.89
CLN3-248ENST00000636355 LEG1Q6P5S2 330 aa9.5□□□□□ -0.89
CLN3-248ENST00000636355 TMPPEQ6ZT21 453 aa9.5□□□□□ -0.89
CLN3-248ENST00000636355 ESPNLQ6ZVH7 1005 aa9.5□□□□□ -0.89
CLN3-248ENST00000636355 ZBTB46Q86UZ6 589 aa9.5□□□□□ -0.89
CLN3-248ENST00000636355 VASH2Q86V25 355 aa9.5□□□□□ -0.89
CLN3-248ENST00000636355 IGFN1Q86VF2 1251 aa9.5□□□□□ -0.89
CLN3-248ENST00000636355 SYS1Q8N2H4 156 aa9.5□□□□□ -0.89
CLN3-248ENST00000636355 EXD3Q8N9H8 876 aa9.5□□□□□ -0.89
CLN3-248ENST00000636355 CYB561A3Q8NBI2 242 aa9.5□□□□□ -0.89
CLN3-248ENST00000636355 ZNF485Q8NCK3 441 aa9.5□□□□□ -0.89
CLN3-248ENST00000636355 OR2T27Q8NH04 317 aa9.5□□□□□ -0.89
CLN3-248ENST00000636355 C12orf43Q96C57 262 aaKnown RBP9.5□□□□□ -0.89
CLN3-248ENST00000636355 SCMH1Q96GD3 660 aa9.5□□□□□ -0.89
CLN3-248ENST00000636355 ADAD1Q96M93 576 aaKnown RBP9.5□□□□□ -0.89
CLN3-248ENST00000636355 KLHL15Q96M94 604 aa9.5□□□□□ -0.89
CLN3-248ENST00000636355 OR5B2Q96R09 309 aa9.5□□□□□ -0.89
CLN3-248ENST00000636355 NMNAT3Q96T66 252 aa9.5□□□□□ -0.89
CLN3-248ENST00000636355 COQ7Q99807 217 aa9.5□□□□□ -0.89
CLN3-248ENST00000636355 ALG12Q9BV10 488 aa9.5□□□□□ -0.89
CLN3-248ENST00000636355 HCAR1Q9BXC0 346 aa9.5□□□□□ -0.89
CLN3-248ENST00000636355 MARCH7Q9H992 704 aa9.5□□□□□ -0.89
CLN3-248ENST00000636355 ERVK13-1Q9NX77 482 aa9.5□□□□□ -0.89
CLN3-248ENST00000636355 DKK4Q9UBT3 224 aa9.5□□□□□ -0.89
CLN3-248ENST00000636355 NPIPA1Q9UND3 350 aa9.5□□□□□ -0.89
CLN3-248ENST00000636355 WDFY3Q8IZQ1 3526 aa9.5□□□□□ -0.89
CLN3-248ENST00000636355 FREM3P0C091 2139 aa9.49□□□□□ -0.89
CLN3-248ENST00000636355 A0A0G2JMM0 328 aa9.49□□□□□ -0.89
CLN3-248ENST00000636355 A0A1W2PPB8 328 aa9.49□□□□□ -0.89
CLN3-248ENST00000636355 A0A1W2PRS3 328 aa9.49□□□□□ -0.89
CLN3-248ENST00000636355 OR6C68A6NDL8 312 aa9.49□□□□□ -0.89
CLN3-248ENST00000636355 ARGFXA6NJG6 315 aa9.49□□□□□ -0.89
CLN3-248ENST00000636355 C12orf71A8MTZ7 269 aa9.49□□□□□ -0.89
CLN3-248ENST00000636355 KIR3DP1A8MWS1 328 aa9.49□□□□□ -0.89
CLN3-248ENST00000636355 ACOT7O00154 380 aa9.49□□□□□ -0.89
CLN3-248ENST00000636355 MASP2O00187 686 aa9.49□□□□□ -0.89
CLN3-248ENST00000636355 SULT2B1O00204 365 aa9.49□□□□□ -0.89
CLN3-248ENST00000636355 PHYHO14832 338 aa9.49□□□□□ -0.89
CLN3-248ENST00000636355 EFNA2O43921 213 aa9.49□□□□□ -0.89
CLN3-248ENST00000636355 F13BP05160 661 aa9.49□□□□□ -0.89
CLN3-248ENST00000636355 CD36P16671 472 aa9.49□□□□□ -0.89
CLN3-248ENST00000636355 CPEP16870 476 aa9.49□□□□□ -0.89
CLN3-248ENST00000636355 PSMA1P25786 263 aaKnown RBP9.49□□□□□ -0.89
CLN3-248ENST00000636355 GDF1P27539 372 aa9.49□□□□□ -0.89
CLN3-248ENST00000636355 ETV1P50549 477 aa9.49□□□□□ -0.89
CLN3-248ENST00000636355 P2RY4P51582 365 aa9.49□□□□□ -0.89
CLN3-248ENST00000636355 B3GALT5-AS1P59052 145 aa9.49□□□□□ -0.89
CLN3-248ENST00000636355 H3F3AP84243 136 aa9.49□□□□□ -0.89
CLN3-248ENST00000636355 INPP5JQ15735 1006 aaPredicted RBP9.49□□□□□ -0.89
CLN3-248ENST00000636355 CTF1Q16619 201 aa9.49□□□□□ -0.89
CLN3-248ENST00000636355 ARMCX4Q5H9R4 360 aa9.49□□□□□ -0.89
CLN3-248ENST00000636355 LINC01590Q5TEZ4 76 aa9.49□□□□□ -0.89
CLN3-248ENST00000636355 LINC00299Q6ZSB3 139 aa9.49□□□□□ -0.89
CLN3-248ENST00000636355 MARCH9Q86YJ5 346 aa9.49□□□□□ -0.89
CLN3-248ENST00000636355 ZFP62Q8NB50 900 aaPredicted RBP9.49□□□□□ -0.89
CLN3-248ENST00000636355 FAM83FQ8NEG4 500 aaPredicted RBP9.49□□□□□ -0.89
CLN3-248ENST00000636355 OR51G2Q8NGK0 314 aa9.49□□□□□ -0.89
CLN3-248ENST00000636355 OR14L1PQ8NHC6 308 aa9.49□□□□□ -0.89
CLN3-248ENST00000636355 ASB10Q8WXI3 467 aa9.49□□□□□ -0.89
CLN3-248ENST00000636355 OTULINQ96BN8 352 aa9.49□□□□□ -0.89
CLN3-248ENST00000636355 JSRP1Q96MG2 331 aaPredicted RBP9.49□□□□□ -0.89
CLN3-248ENST00000636355 OXGR1Q96P68 337 aa9.49□□□□□ -0.89
CLN3-248ENST00000636355 GNRHR2Q96P88 292 aa9.49□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 55.9 ms