RNA–Protein interactions for RNA: ENST00000635861.1

CLN3-241, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,404 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-241ENST00000635861 ZNF99A8MXY4 864 aaPredicted RBP15.98■□□□□ 0.15
CLN3-241ENST00000635861 M0R082 166 aa15.98■□□□□ 0.15
CLN3-241ENST00000635861 APEHP13798 732 aaKnown RBP15.98■□□□□ 0.15
CLN3-241ENST00000635861 GRPRP30550 384 aa15.98■□□□□ 0.15
CLN3-241ENST00000635861 CALCRP30988 508 aa15.98■□□□□ 0.15
CLN3-241ENST00000635861 HOXC5Q00444 222 aa15.98■□□□□ 0.15
CLN3-241ENST00000635861 CDK6Q00534 326 aa15.98■□□□□ 0.15
CLN3-241ENST00000635861 POU3F1Q03052 451 aaPredicted RBP15.98■□□□□ 0.15
CLN3-241ENST00000635861 BLOC1S3Q6QNY0 202 aa15.98■□□□□ 0.15
CLN3-241ENST00000635861 CPLX4Q7Z7G2 160 aa15.98■□□□□ 0.15
CLN3-241ENST00000635861 LSRQ86X29 649 aaPredicted RBP15.98■□□□□ 0.15
CLN3-241ENST00000635861 SNX32Q86XE0 403 aa15.98■□□□□ 0.15
CLN3-241ENST00000635861 ZNF417Q8TAU3 575 aa15.98■□□□□ 0.15
CLN3-241ENST00000635861 SPDL1Q96EA4 605 aa15.98■□□□□ 0.15
CLN3-241ENST00000635861 SLC41A3Q96GZ6 507 aa15.98■□□□□ 0.15
CLN3-241ENST00000635861 OR2M2Q96R28 347 aa15.98■□□□□ 0.15
CLN3-241ENST00000635861 ZNF607Q96SK3 696 aa15.98■□□□□ 0.15
CLN3-241ENST00000635861 ZNF587Q96SQ5 575 aaPredicted RBP15.98■□□□□ 0.15
CLN3-241ENST00000635861 CCDC28BQ9BUN5 200 aa15.98■□□□□ 0.15
CLN3-241ENST00000635861 CRLF2Q9HC73 371 aa15.98■□□□□ 0.15
CLN3-241ENST00000635861 SLC25A37Q9NYZ2 338 aa15.98■□□□□ 0.15
CLN3-241ENST00000635861 TRAF3IP2O43734 574 aaPredicted RBP15.97■□□□□ 0.15
CLN3-241ENST00000635861 ZNF23P17027 643 aa15.97■□□□□ 0.15
CLN3-241ENST00000635861 NPR2P20594 1047 aa15.97■□□□□ 0.15
CLN3-241ENST00000635861 HNF1AP20823 631 aa15.97■□□□□ 0.15
CLN3-241ENST00000635861 GTF2A1P52655 376 aaPredicted RBP15.97■□□□□ 0.15
CLN3-241ENST00000635861 TUBA1BP68363 451 aa15.97■□□□□ 0.15
CLN3-241ENST00000635861 TUBA4AP68366 448 aa15.97■□□□□ 0.15
CLN3-241ENST00000635861 CEACAM16Q2WEN9 425 aa15.97■□□□□ 0.15
CLN3-241ENST00000635861 TUBA1AQ71U36 451 aa15.97■□□□□ 0.15
CLN3-241ENST00000635861 ZNF627Q7L945 461 aa15.97■□□□□ 0.15
CLN3-241ENST00000635861 UEVLDQ8IX04 471 aa15.97■□□□□ 0.15
CLN3-241ENST00000635861 TMEM123Q8N131 208 aa15.97■□□□□ 0.15
CLN3-241ENST00000635861 NFKBIDQ8NI38 313 aa15.97■□□□□ 0.15
CLN3-241ENST00000635861 PRR14Q9BWN1 585 aa15.97■□□□□ 0.15
CLN3-241ENST00000635861 DENND2DQ9H6A0 471 aaPredicted RBP15.97■□□□□ 0.15
CLN3-241ENST00000635861 TMEM27Q9HBJ8 222 aa15.97■□□□□ 0.15
CLN3-241ENST00000635861 SLCO1B3Q9NPD5 702 aa15.97■□□□□ 0.15
CLN3-241ENST00000635861 B3GAT2Q9NPZ5 323 aa15.97■□□□□ 0.15
CLN3-241ENST00000635861 KLHL14Q9P2G3 628 aa15.97■□□□□ 0.15
CLN3-241ENST00000635861 IGKV1D-42A0A075B6H8 117 aa15.96■□□□□ 0.15
CLN3-241ENST00000635861 A0A087WUJ7 227 aa15.96■□□□□ 0.15
CLN3-241ENST00000635861 SERPINB7O75635 380 aa15.96■□□□□ 0.15
CLN3-241ENST00000635861 GPX2P18283 190 aa15.96■□□□□ 0.15
CLN3-241ENST00000635861 IGFBP5P24593 272 aa15.96■□□□□ 0.15
CLN3-241ENST00000635861 GIFP27352 417 aa15.96■□□□□ 0.15
CLN3-241ENST00000635861 HTR2AP28223 471 aa15.96■□□□□ 0.15
CLN3-241ENST00000635861 HGFACQ04756 655 aa15.96■□□□□ 0.15
CLN3-241ENST00000635861 VHLLQ6RSH7 139 aa15.96■□□□□ 0.15
CLN3-241ENST00000635861 UGT2A3Q6UWM9 527 aa15.96■□□□□ 0.15
CLN3-241ENST00000635861 FUNDC1Q8IVP5 155 aa15.96■□□□□ 0.15
CLN3-241ENST00000635861 FOXN4Q96NZ1 517 aa15.96■□□□□ 0.15
CLN3-241ENST00000635861 ASPNQ9BXN1 380 aa15.96■□□□□ 0.15
CLN3-241ENST00000635861 SEC14L4Q9UDX3 406 aa15.96■□□□□ 0.15
CLN3-241ENST00000635861 NOX1Q9Y5S8 564 aa15.96■□□□□ 0.15
CLN3-241ENST00000635861 TRBV5-3A0A0A0MS03 114 aa15.95■□□□□ 0.14
CLN3-241ENST00000635861 IGHV2OR16-5A0A0B4J2B6 119 aa15.95■□□□□ 0.14
CLN3-241ENST00000635861 A0A0B4J2E0 115 aa15.95■□□□□ 0.14
CLN3-241ENST00000635861 LOC100289279A0A1B0GTE1 492 aa15.95■□□□□ 0.14
CLN3-241ENST00000635861 A0A1B0GX12 115 aa15.95■□□□□ 0.14
CLN3-241ENST00000635861 EVPLLA8MZ36 301 aa15.95■□□□□ 0.14
CLN3-241ENST00000635861 hCG_2039718K7EN88 272 aa15.95■□□□□ 0.14
CLN3-241ENST00000635861 NQO1P15559 274 aaKnown RBP15.95■□□□□ 0.14
CLN3-241ENST00000635861 SRD5A1P18405 259 aa15.95■□□□□ 0.14
CLN3-241ENST00000635861 SLC6A2P23975 617 aa15.95■□□□□ 0.14
CLN3-241ENST00000635861 ATP4BP51164 291 aa15.95■□□□□ 0.14
CLN3-241ENST00000635861 SCARB2Q14108 478 aa15.95■□□□□ 0.14
CLN3-241ENST00000635861 IQCCQ4KMZ1 466 aa15.95■□□□□ 0.14
CLN3-241ENST00000635861 RANBP3LQ86VV4 465 aaPredicted RBP15.95■□□□□ 0.14
CLN3-241ENST00000635861 MSRB3Q8IXL7 192 aa15.95■□□□□ 0.14
CLN3-241ENST00000635861 C20orf196Q8IYI0 205 aa15.95■□□□□ 0.14
CLN3-241ENST00000635861 MSI2Q96DH6 328 aaKnown RBP15.95■□□□□ 0.14
CLN3-241ENST00000635861 DOK1Q99704 481 aa15.95■□□□□ 0.14
CLN3-241ENST00000635861 TMEM43Q9BTV4 400 aa15.95■□□□□ 0.14
CLN3-241ENST00000635861 CCDC167Q9P0B6 97 aa15.95■□□□□ 0.14
CLN3-241ENST00000635861 VAPAQ9P0L0 249 aa15.95■□□□□ 0.14
CLN3-241ENST00000635861 SLC13A4Q9UKG4 626 aa15.95■□□□□ 0.14
CLN3-241ENST00000635861 FBXL3Q9UKT7 428 aa15.95■□□□□ 0.14
CLN3-241ENST00000635861 ANK2Q01484 3957 aa15.95■□□□□ 0.14
CLN3-241ENST00000635861 IGHV4-61A0A0C4DH41 118 aa15.94■□□□□ 0.14
CLN3-241ENST00000635861 MS4A18H0YCH9 400 aa15.94■□□□□ 0.14
CLN3-241ENST00000635861 EDF1O60869 148 aaKnown RBP15.94■□□□□ 0.14
CLN3-241ENST00000635861 STAMBPO95630 424 aa15.94■□□□□ 0.14
CLN3-241ENST00000635861 C8BP07358 591 aa15.94■□□□□ 0.14
CLN3-241ENST00000635861 THBS4P35443 961 aa15.94■□□□□ 0.14
CLN3-241ENST00000635861 EVX1P49640 407 aa15.94■□□□□ 0.14
CLN3-241ENST00000635861 RGS8P57771 180 aaPredicted RBP15.94■□□□□ 0.14
CLN3-241ENST00000635861 IL1RL1Q01638 556 aa15.94■□□□□ 0.14
CLN3-241ENST00000635861 CARTPTQ16568 116 aa15.94■□□□□ 0.14
CLN3-241ENST00000635861 MS4A18Q3C1V0 323 aa15.94■□□□□ 0.14
CLN3-241ENST00000635861 HIPK4Q8NE63 616 aa15.94■□□□□ 0.14
CLN3-241ENST00000635861 HPS1Q92902 700 aa15.94■□□□□ 0.14
CLN3-241ENST00000635861 RSPO3Q9BXY4 272 aaPredicted RBP15.94■□□□□ 0.14
CLN3-241ENST00000635861 BPESC1Q9GZL8 116 aa15.94■□□□□ 0.14
CLN3-241ENST00000635861 SEC61A2Q9H9S3 476 aa15.94■□□□□ 0.14
CLN3-241ENST00000635861 SLC52A3Q9NQ40 469 aa15.94■□□□□ 0.14
CLN3-241ENST00000635861 MRPL39Q9NYK5 338 aaKnown RBP15.94■□□□□ 0.14
CLN3-241ENST00000635861 SPEF1Q9Y4P9 236 aa15.94■□□□□ 0.14
CLN3-241ENST00000635861 CAPN7Q9Y6W3 813 aa15.94■□□□□ 0.14
CLN3-241ENST00000635861 FMO6PO60774 539 aa15.94■□□□□ 0.14
Retrieved 100 of 20,778 RNA–protein pairs in 36 ms