RNA–Protein interactions for RNA: ENST00000625216.2

PNKP-217, Transcript of polynucleotide kinase 3'-phosphatase, humanhuman

TSL 5

Gene PNKP, Length 629 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PNKP-217ENST00000625216 CELSR1Q9NYQ6 3014 aa11.25□□□□□ -0.61
PNKP-217ENST00000625216 TEP1Q99973 2627 aaKnown RBP11.24□□□□□ -0.61
PNKP-217ENST00000625216 MED12LQ86YW9 2145 aa11.24□□□□□ -0.61
PNKP-217ENST00000625216 A0A087WUJ7 227 aa11.24□□□□□ -0.61
PNKP-217ENST00000625216 KPNA4O00629 521 aaPredicted RBP11.24□□□□□ -0.61
PNKP-217ENST00000625216 DENRO43583 198 aaKnown RBP11.24□□□□□ -0.61
PNKP-217ENST00000625216 CLIC3O95833 236 aa11.24□□□□□ -0.61
PNKP-217ENST00000625216 RAF1P04049 648 aa11.24□□□□□ -0.61
PNKP-217ENST00000625216 TP53P04637 393 aaPredicted RBP11.24□□□□□ -0.61
PNKP-217ENST00000625216 GNAO1P09471 354 aa11.24□□□□□ -0.61
PNKP-217ENST00000625216 FKBP2P26885 142 aaKnown RBP11.24□□□□□ -0.61
PNKP-217ENST00000625216 EPHA2P29317 976 aa11.24□□□□□ -0.61
PNKP-217ENST00000625216 TACR3P29371 465 aa11.24□□□□□ -0.61
PNKP-217ENST00000625216 RBM34P42696 430 aaKnown RBP11.24□□□□□ -0.61
PNKP-217ENST00000625216 SLC1A3P43003 542 aa11.24□□□□□ -0.61
PNKP-217ENST00000625216 RAC3P60763 192 aa11.24□□□□□ -0.61
PNKP-217ENST00000625216 ZNF239Q16600 458 aaKnown RBP11.24□□□□□ -0.61
PNKP-217ENST00000625216 USP51Q70EK9 711 aa11.24□□□□□ -0.61
PNKP-217ENST00000625216 P3H2Q8IVL5 708 aa11.24□□□□□ -0.61
PNKP-217ENST00000625216 PARP8Q8N3A8 854 aa11.24□□□□□ -0.61
PNKP-217ENST00000625216 GNPDA2Q8TDQ7 276 aa11.24□□□□□ -0.61
PNKP-217ENST00000625216 RNF128Q8TEB7 428 aa11.24□□□□□ -0.61
PNKP-217ENST00000625216 PITX2Q99697 317 aa11.24□□□□□ -0.61
PNKP-217ENST00000625216 ANKRD60Q9BZ19 345 aa11.24□□□□□ -0.61
PNKP-217ENST00000625216 ADAM19Q9H013 955 aa11.24□□□□□ -0.61
PNKP-217ENST00000625216 OR10A4Q9H209 315 aa11.24□□□□□ -0.61
PNKP-217ENST00000625216 MEPEQ9NQ76 525 aaPredicted RBP11.24□□□□□ -0.61
PNKP-217ENST00000625216 C20orf141Q9NUB4 165 aa11.24□□□□□ -0.61
PNKP-217ENST00000625216 FAM118AQ9NWS6 357 aa11.24□□□□□ -0.61
PNKP-217ENST00000625216 CLEC4AQ9UMR7 237 aa11.24□□□□□ -0.61
PNKP-217ENST00000625216 PCDHGB5Q9Y5G0 923 aa11.24□□□□□ -0.61
PNKP-217ENST00000625216 ABCA4P78363 2273 aa11.24□□□□□ -0.61
PNKP-217ENST00000625216 AKAP6Q13023 2319 aa11.23□□□□□ -0.61
PNKP-217ENST00000625216 H0YAE9 185 aa11.23□□□□□ -0.61
PNKP-217ENST00000625216 SOX14O95416 240 aa11.23□□□□□ -0.61
PNKP-217ENST00000625216 IGFBP1P08833 259 aaPredicted RBP11.23□□□□□ -0.61
PNKP-217ENST00000625216 IFI30P13284 250 aa11.23□□□□□ -0.61
PNKP-217ENST00000625216 CDH2P19022 906 aaPredicted RBP11.23□□□□□ -0.61
PNKP-217ENST00000625216 MAKP20794 623 aa11.23□□□□□ -0.61
PNKP-217ENST00000625216 CRYGSP22914 178 aa11.23□□□□□ -0.61
PNKP-217ENST00000625216 FPR3P25089 353 aa11.23□□□□□ -0.61
PNKP-217ENST00000625216 SHC1P29353 583 aa11.23□□□□□ -0.61
PNKP-217ENST00000625216 PRKCDQ05655 676 aa11.23□□□□□ -0.61
PNKP-217ENST00000625216 NPRL3Q12980 569 aa11.23□□□□□ -0.61
PNKP-217ENST00000625216 KEAP1Q14145 624 aa11.23□□□□□ -0.61
PNKP-217ENST00000625216 TMEM201Q5SNT2 666 aa11.23□□□□□ -0.61
PNKP-217ENST00000625216 C3orf33Q6P1S2 294 aa11.23□□□□□ -0.61
PNKP-217ENST00000625216 CD300LDQ6UXZ3 194 aa11.23□□□□□ -0.61
PNKP-217ENST00000625216 RNF113BQ8IZP6 322 aaKnown RBP11.23□□□□□ -0.61
PNKP-217ENST00000625216 SLC25A43Q8WUT9 341 aaPredicted RBP11.23□□□□□ -0.61
PNKP-217ENST00000625216 ROBO4Q8WZ75 1007 aa11.23□□□□□ -0.61
PNKP-217ENST00000625216 CNBD2Q96M20 576 aa11.23□□□□□ -0.61
PNKP-217ENST00000625216 HS6ST2Q96MM7 605 aa11.23□□□□□ -0.61
PNKP-217ENST00000625216 HDHD5Q9BXW7 423 aa11.23□□□□□ -0.61
PNKP-217ENST00000625216 GRIP2Q9C0E4 1043 aa11.23□□□□□ -0.61
PNKP-217ENST00000625216 Q9H521 79 aa11.23□□□□□ -0.61
PNKP-217ENST00000625216 ZNF556Q9HAH1 456 aa11.23□□□□□ -0.61
PNKP-217ENST00000625216 C12orf10Q9HB07 376 aa11.23□□□□□ -0.61
PNKP-217ENST00000625216 SELENONQ9NZV5 590 aa11.23□□□□□ -0.61
PNKP-217ENST00000625216 OSGIN1Q9UJX0 560 aa11.23□□□□□ -0.61
PNKP-217ENST00000625216 PLEKHA6Q9Y2H5 1048 aa11.23□□□□□ -0.61
PNKP-217ENST00000625216 GPR52Q9Y2T5 361 aa11.23□□□□□ -0.61
PNKP-217ENST00000625216 MED31Q9Y3C7 131 aa11.23□□□□□ -0.61
PNKP-217ENST00000625216 SPIN1Q9Y657 262 aaPredicted RBP11.23□□□□□ -0.61
PNKP-217ENST00000625216 ELOA3DA6NLF2 546 aaPredicted RBP11.22□□□□□ -0.61
PNKP-217ENST00000625216 CDC42EP2O14613 210 aa11.22□□□□□ -0.61
PNKP-217ENST00000625216 SLC16A6O15403 523 aa11.22□□□□□ -0.61
PNKP-217ENST00000625216 ATE1O95260 518 aa11.22□□□□□ -0.61
PNKP-217ENST00000625216 YES1P07947 543 aa11.22□□□□□ -0.61
PNKP-217ENST00000625216 PNMTP11086 282 aa11.22□□□□□ -0.61
PNKP-217ENST00000625216 OSMP13725 252 aa11.22□□□□□ -0.61
PNKP-217ENST00000625216 FUT1P19526 365 aa11.22□□□□□ -0.61
PNKP-217ENST00000625216 MYF6P23409 242 aa11.22□□□□□ -0.61
PNKP-217ENST00000625216 AGTR1P30556 359 aa11.22□□□□□ -0.61
PNKP-217ENST00000625216 IFNGR2P38484 337 aa11.22□□□□□ -0.61
PNKP-217ENST00000625216 APOBEC1P41238 236 aaKnown RBP11.22□□□□□ -0.61
PNKP-217ENST00000625216 CLK1P49759 484 aaKnown RBP11.22□□□□□ -0.61
PNKP-217ENST00000625216 TSPAN31Q12999 210 aa11.22□□□□□ -0.61
PNKP-217ENST00000625216 ELOA3BQ3SY89 546 aa11.22□□□□□ -0.61
PNKP-217ENST00000625216 TTC33Q6PID6 262 aaPredicted RBP11.22□□□□□ -0.61
PNKP-217ENST00000625216 STAC2Q6ZMT1 411 aa11.22□□□□□ -0.61
PNKP-217ENST00000625216 FCRLAQ7L513 359 aa11.22□□□□□ -0.61
PNKP-217ENST00000625216 RRM2BQ7LG56 351 aa11.22□□□□□ -0.61
PNKP-217ENST00000625216 GRINAQ7Z429 371 aa11.22□□□□□ -0.61
PNKP-217ENST00000625216 ZNF555Q8NEP9 628 aa11.22□□□□□ -0.61
PNKP-217ENST00000625216 ATP6V1C2Q8NEY4 427 aa11.22□□□□□ -0.61
PNKP-217ENST00000625216 ELOA3Q8NG57 546 aa11.22□□□□□ -0.61
PNKP-217ENST00000625216 OR8D4Q8NGM9 314 aa11.22□□□□□ -0.61
PNKP-217ENST00000625216 USB1Q9BQ65 265 aaKnown RBP11.22□□□□□ -0.61
PNKP-217ENST00000625216 TMEM43Q9BTV4 400 aa11.22□□□□□ -0.61
PNKP-217ENST00000625216 SRXN1Q9BYN0 137 aa11.22□□□□□ -0.61
PNKP-217ENST00000625216 UBAP1Q9NZ09 502 aa11.22□□□□□ -0.61
PNKP-217ENST00000625216 KLHL9Q9P2J3 617 aa11.22□□□□□ -0.61
PNKP-217ENST00000625216 KLHL13Q9P2N7 655 aa11.22□□□□□ -0.61
PNKP-217ENST00000625216 TMED7-TICAM2A0A0A6YYA0 188 aa11.21□□□□□ -0.61
PNKP-217ENST00000625216 LOC100130705A0A1B0GUX0 176 aa11.21□□□□□ -0.61
PNKP-217ENST00000625216 TMEM72A0PK05 275 aa11.21□□□□□ -0.61
PNKP-217ENST00000625216 DEFB108AA8MXU0 73 aa11.21□□□□□ -0.61
PNKP-217ENST00000625216 LRRN3E7EW58 273 aa11.21□□□□□ -0.61
PNKP-217ENST00000625216 CCNA2P20248 432 aa11.21□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 29.1 ms