RNA–Protein interactions for RNA: ENST00000620219.4

CPSF1-213, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CPSF1, Length 4,462 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-213ENST00000620219 FOXJ2Q9P0K8 574 aa14.25□□□□□ -0.13
CPSF1-213ENST00000620219 FBXL2Q9UKC9 423 aa14.25□□□□□ -0.13
CPSF1-213ENST00000620219 POU4F2Q12837 409 aa14.25□□□□□ -0.13
CPSF1-213ENST00000620219 OR7E24Q6IFN5 339 aa14.25□□□□□ -0.13
CPSF1-213ENST00000620219 GPALPP1Q8IXQ4 340 aa14.25□□□□□ -0.13
CPSF1-213ENST00000620219 CENPSQ8N2Z9 138 aa14.25□□□□□ -0.13
CPSF1-213ENST00000620219 INTS14Q96SY0 518 aa14.25□□□□□ -0.13
CPSF1-213ENST00000620219 COQ7Q99807 217 aa14.25□□□□□ -0.13
CPSF1-213ENST00000620219 RTN4RQ9BZR6 473 aa14.25□□□□□ -0.13
CPSF1-213ENST00000620219 PEX16Q9Y5Y5 336 aa14.25□□□□□ -0.13
CPSF1-213ENST00000620219 CCL3P10147 92 aa14.25□□□□□ -0.13
CPSF1-213ENST00000620219 POU3F2P20265 443 aaPredicted RBP14.25□□□□□ -0.13
CPSF1-213ENST00000620219 HSD11B1P28845 292 aa14.25□□□□□ -0.13
CPSF1-213ENST00000620219 RPS19P39019 145 aaKnown RBP14.25□□□□□ -0.13
CPSF1-213ENST00000620219 INSM1Q01101 510 aaPredicted RBP14.25□□□□□ -0.13
CPSF1-213ENST00000620219 ACER2Q5QJU3 275 aa14.25□□□□□ -0.13
CPSF1-213ENST00000620219 ADAM30Q9UKF2 790 aa14.25□□□□□ -0.13
CPSF1-213ENST00000620219 ADAMTS9Q9P2N4 1935 aa14.25□□□□□ -0.13
CPSF1-213ENST00000620219 SPI1P17947 270 aa14.24□□□□□ -0.13
CPSF1-213ENST00000620219 C9orf135Q5VTT2 229 aa14.24□□□□□ -0.13
CPSF1-213ENST00000620219 GPR139Q6DWJ6 353 aa14.24□□□□□ -0.13
CPSF1-213ENST00000620219 TGIF2Q9GZN2 237 aa14.24□□□□□ -0.13
CPSF1-213ENST00000620219 A0A1W2PQL4 384 aaPredicted RBP14.24□□□□□ -0.13
CPSF1-213ENST00000620219 TSPAN2O60636 221 aa14.24□□□□□ -0.13
CPSF1-213ENST00000620219 STARP49675 285 aa14.24□□□□□ -0.13
CPSF1-213ENST00000620219 GLO1Q04760 184 aa14.24□□□□□ -0.13
CPSF1-213ENST00000620219 MLLT11Q13015 90 aaPredicted RBP14.24□□□□□ -0.13
CPSF1-213ENST00000620219 DDI2Q5TDH0 399 aa14.24□□□□□ -0.13
CPSF1-213ENST00000620219 SPINK14Q6IE38 97 aa14.24□□□□□ -0.13
CPSF1-213ENST00000620219 CD300LDQ6UXZ3 194 aa14.24□□□□□ -0.13
CPSF1-213ENST00000620219 ATG4DQ86TL0 474 aaPredicted RBP14.24□□□□□ -0.13
CPSF1-213ENST00000620219 ZFP3Q96NJ6 502 aa14.24□□□□□ -0.13
CPSF1-213ENST00000620219 MMP27Q9H306 513 aa14.24□□□□□ -0.13
CPSF1-213ENST00000620219 ELL3Q9HB65 397 aaPredicted RBP14.24□□□□□ -0.13
CPSF1-213ENST00000620219 FABP12A6NFH5 140 aa14.24□□□□□ -0.13
CPSF1-213ENST00000620219 RPS4Y1P22090 263 aaKnown RBP14.24□□□□□ -0.13
CPSF1-213ENST00000620219 CCNOP22674 350 aa14.24□□□□□ -0.13
CPSF1-213ENST00000620219 APOBEC1P41238 236 aaKnown RBP14.24□□□□□ -0.13
CPSF1-213ENST00000620219 CLDN17P56750 224 aa14.24□□□□□ -0.13
CPSF1-213ENST00000620219 C3orf33Q6P1S2 294 aa14.24□□□□□ -0.13
CPSF1-213ENST00000620219 H1FNTQ75WM6 255 aaPredicted RBP14.24□□□□□ -0.13
CPSF1-213ENST00000620219 OR6Q1Q8NGQ2 317 aa14.24□□□□□ -0.13
CPSF1-213ENST00000620219 ACP1P24666 158 aa14.23□□□□□ -0.13
CPSF1-213ENST00000620219 CASP3P42574 277 aa14.23□□□□□ -0.13
CPSF1-213ENST00000620219 MDGA2Q7Z553 956 aa14.23□□□□□ -0.13
CPSF1-213ENST00000620219 SLC22A16Q86VW1 577 aa14.23□□□□□ -0.13
CPSF1-213ENST00000620219 KLHDC3Q9BQ90 382 aa14.23□□□□□ -0.13
CPSF1-213ENST00000620219 CLDN16Q9Y5I7 305 aa14.23□□□□□ -0.13
CPSF1-213ENST00000620219 OR6C68A6NDL8 312 aa14.23□□□□□ -0.13
CPSF1-213ENST00000620219 ZNF593O00488 134 aaPredicted RBP14.23□□□□□ -0.13
CPSF1-213ENST00000620219 FCER2P06734 321 aa14.23□□□□□ -0.13
CPSF1-213ENST00000620219 CD59P13987 128 aa14.23□□□□□ -0.13
CPSF1-213ENST00000620219 F8A1P23610 371 aa14.23□□□□□ -0.13
CPSF1-213ENST00000620219 EIF2B1Q14232 305 aaKnown RBP14.23□□□□□ -0.13
CPSF1-213ENST00000620219 TM9SF4Q92544 642 aa14.23□□□□□ -0.13
CPSF1-213ENST00000620219 FER1L6-AS2Q96M78 137 aa14.23□□□□□ -0.13
CPSF1-213ENST00000620219 TXNL4BQ9NX01 149 aaKnown RBP14.23□□□□□ -0.13
CPSF1-213ENST00000620219 ANXA2P2A6NMY6 339 aa14.23□□□□□ -0.13
CPSF1-213ENST00000620219 ANXA2P07355 339 aaKnown RBP14.23□□□□□ -0.13
CPSF1-213ENST00000620219 H2BFMP0C1H6 154 aa14.23□□□□□ -0.13
CPSF1-213ENST00000620219 FBXO45P0C2W1 286 aa14.23□□□□□ -0.13
CPSF1-213ENST00000620219 FTH1P19P0C7X4 201 aa14.23□□□□□ -0.13
CPSF1-213ENST00000620219 LIMS3P0CW19 117 aa14.23□□□□□ -0.13
CPSF1-213ENST00000620219 LIMS4P0CW20 117 aa14.23□□□□□ -0.13
CPSF1-213ENST00000620219 SSPNQ14714 243 aa14.23□□□□□ -0.13
CPSF1-213ENST00000620219 MEP1BQ16820 701 aa14.23□□□□□ -0.13
CPSF1-213ENST00000620219 BEST3Q8N1M1 668 aa14.23□□□□□ -0.13
CPSF1-213ENST00000620219 KLHL15Q96M94 604 aa14.23□□□□□ -0.13
CPSF1-213ENST00000620219 IL17BQ9UHF5 180 aa14.23□□□□□ -0.13
CPSF1-213ENST00000620219 COA3Q9Y2R0 106 aaPredicted RBP14.23□□□□□ -0.13
CPSF1-213ENST00000620219 B4E171 279 aa14.23□□□□□ -0.13
CPSF1-213ENST00000620219 IGHV3-9P01782 118 aa14.23□□□□□ -0.13
CPSF1-213ENST00000620219 MSX1P28360 303 aa14.23□□□□□ -0.13
CPSF1-213ENST00000620219 SDHAP31040 664 aa14.23□□□□□ -0.13
CPSF1-213ENST00000620219 TSPAN7P41732 249 aa14.23□□□□□ -0.13
CPSF1-213ENST00000620219 KCTD18Q6PI47 426 aaPredicted RBP14.23□□□□□ -0.13
CPSF1-213ENST00000620219 LRRN1Q6UXK5 716 aa14.23□□□□□ -0.13
CPSF1-213ENST00000620219 ZC3HAV1Q7Z2W4 902 aaKnown RBP14.23□□□□□ -0.13
CPSF1-213ENST00000620219 ST8SIA1Q92185 356 aa14.23□□□□□ -0.13
CPSF1-213ENST00000620219 PDCD1LG2Q9BQ51 273 aa14.23□□□□□ -0.13
CPSF1-213ENST00000620219 SLC19A3Q9BZV2 496 aa14.23□□□□□ -0.13
CPSF1-213ENST00000620219 CCDC86Q9H6F5 360 aaKnown RBP14.23□□□□□ -0.13
CPSF1-213ENST00000620219 FKRPQ9H9S5 495 aa14.23□□□□□ -0.13
CPSF1-213ENST00000620219 ZNF354AO60765 605 aaPredicted RBP14.22□□□□□ -0.13
CPSF1-213ENST00000620219 DAP3P51398 398 aaKnown RBP14.22□□□□□ -0.13
CPSF1-213ENST00000620219 ACTA2P62736 377 aa14.22□□□□□ -0.13
CPSF1-213ENST00000620219 ACTG2P63267 376 aa14.22□□□□□ -0.13
CPSF1-213ENST00000620219 FOXK1P85037 733 aa14.22□□□□□ -0.13
CPSF1-213ENST00000620219 EIF3IQ13347 325 aaKnown RBP14.22□□□□□ -0.13
CPSF1-213ENST00000620219 FAM27D1Q5T7N8 215 aa14.22□□□□□ -0.13
CPSF1-213ENST00000620219 ATP1A1-AS1Q5TC04 95 aa14.22□□□□□ -0.13
CPSF1-213ENST00000620219 KRT74Q7RTS7 529 aa14.22□□□□□ -0.13
CPSF1-213ENST00000620219 DCBLD2Q96PD2 775 aa14.22□□□□□ -0.13
CPSF1-213ENST00000620219 WDR54Q9H977 334 aa14.22□□□□□ -0.13
CPSF1-213ENST00000620219 SMURF1Q9HCE7 757 aa14.22□□□□□ -0.13
CPSF1-213ENST00000620219 ANKUB1A6NFN9 424 aa14.22□□□□□ -0.13
CPSF1-213ENST00000620219 MAP3K8P41279 467 aa14.22□□□□□ -0.13
CPSF1-213ENST00000620219 GDI2P50395 445 aaKnown RBP14.22□□□□□ -0.13
CPSF1-213ENST00000620219 TAS2R43P59537 309 aa14.22□□□□□ -0.13
CPSF1-213ENST00000620219 FAM198BQ6UWH4 519 aa14.22□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 30.7 ms