RNA–Protein interactions for RNA: ENST00000607092.1

CUX1-220, Transcript of cut like homeobox 1, humanhuman

TSL 3

Gene CUX1, Length 559 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-220ENST00000607092 LRR1Q96L50 414 aa5.43□□□□□ -1.54
CUX1-220ENST00000607092 OXGR1Q96P68 337 aa5.43□□□□□ -1.54
CUX1-220ENST00000607092 LRRC37BQ96QE4 947 aa5.43□□□□□ -1.54
CUX1-220ENST00000607092 PANX1Q96RD7 426 aa5.43□□□□□ -1.54
CUX1-220ENST00000607092 EPYCQ99645 322 aa5.43□□□□□ -1.54
CUX1-220ENST00000607092 SLC38A1Q9H2H9 487 aa5.43□□□□□ -1.54
CUX1-220ENST00000607092 LRMDAQ9H2I8 198 aa5.43□□□□□ -1.54
CUX1-220ENST00000607092 ZNF696Q9H7X3 374 aa5.43□□□□□ -1.54
CUX1-220ENST00000607092 EVA1AQ9H8M9 152 aa5.43□□□□□ -1.54
CUX1-220ENST00000607092 NOX3Q9HBY0 568 aa5.43□□□□□ -1.54
CUX1-220ENST00000607092 DDX28Q9NUL7 540 aaKnown RBP5.43□□□□□ -1.54
CUX1-220ENST00000607092 SLCO1C1Q9NYB5 712 aa5.43□□□□□ -1.54
CUX1-220ENST00000607092 PLA2G2EQ9NZK7 142 aa5.43□□□□□ -1.54
CUX1-220ENST00000607092 SELENONQ9NZV5 590 aa5.43□□□□□ -1.54
CUX1-220ENST00000607092 CORINQ9Y5Q5 1042 aa5.43□□□□□ -1.54
CUX1-220ENST00000607092 DSPPQ9NZW4 1301 aa5.43□□□□□ -1.54
CUX1-220ENST00000607092 A0A096LPE4 126 aa5.42□□□□□ -1.54
CUX1-220ENST00000607092 A0A0G2JPF8 293 aa5.42□□□□□ -1.54
CUX1-220ENST00000607092 A0A1W2PPW3 197 aa5.42□□□□□ -1.54
CUX1-220ENST00000607092 A0A1W2PPZ6 126 aa5.42□□□□□ -1.54
CUX1-220ENST00000607092 SH3PXD2BA1X283 911 aa5.42□□□□□ -1.54
CUX1-220ENST00000607092 ZC3H12DA2A288 527 aaKnown RBP5.42□□□□□ -1.54
CUX1-220ENST00000607092 CCDC154A6NI56 674 aa5.42□□□□□ -1.54
CUX1-220ENST00000607092 SMIM23A6NLE4 172 aa5.42□□□□□ -1.54
CUX1-220ENST00000607092 HMGB1P1B2RPK0 211 aaPredicted RBP5.42□□□□□ -1.54
CUX1-220ENST00000607092 HNRNPCL2B2RXH8 293 aa5.42□□□□□ -1.54
CUX1-220ENST00000607092 HNRNPCL3B7ZW38 293 aa5.42□□□□□ -1.54
CUX1-220ENST00000607092 AP3D1O14617 1153 aa5.42□□□□□ -1.54
CUX1-220ENST00000607092 PPIHO43447 177 aaKnown RBP5.42□□□□□ -1.54
CUX1-220ENST00000607092 HNRNPCL1O60812 293 aaKnown RBP5.42□□□□□ -1.54
CUX1-220ENST00000607092 NPIPB7O75200 414 aa5.42□□□□□ -1.54
CUX1-220ENST00000607092 UPK3AO75631 287 aa5.42□□□□□ -1.54
CUX1-220ENST00000607092 HNRNPCL4P0DMR1 293 aa5.42□□□□□ -1.54
CUX1-220ENST00000607092 GAAP10253 952 aa5.42□□□□□ -1.54
CUX1-220ENST00000607092 LBPP18428 481 aa5.42□□□□□ -1.54
CUX1-220ENST00000607092 RPS4Y1P22090 263 aaKnown RBP5.42□□□□□ -1.54
CUX1-220ENST00000607092 CALCRP30988 508 aa5.42□□□□□ -1.54
CUX1-220ENST00000607092 CLDN17P56750 224 aa5.42□□□□□ -1.54
CUX1-220ENST00000607092 IFFO1Q0D2I5 559 aa5.42□□□□□ -1.54
CUX1-220ENST00000607092 CAMK2DQ13557 499 aa5.42□□□□□ -1.54
CUX1-220ENST00000607092 NKPD1Q17RQ9 610 aa5.42□□□□□ -1.54
CUX1-220ENST00000607092 CEACAM16Q2WEN9 425 aa5.42□□□□□ -1.54
CUX1-220ENST00000607092 AGBL2Q5U5Z8 902 aa5.42□□□□□ -1.54
CUX1-220ENST00000607092 KRT80Q6KB66 452 aa5.42□□□□□ -1.54
CUX1-220ENST00000607092 ZNF621Q6ZSS3 439 aa5.42□□□□□ -1.54
CUX1-220ENST00000607092 ZNF627Q7L945 461 aa5.42□□□□□ -1.54
CUX1-220ENST00000607092 C1QL2Q7Z5L3 287 aa5.42□□□□□ -1.54
CUX1-220ENST00000607092 RNF130Q86XS8 419 aa5.42□□□□□ -1.54
CUX1-220ENST00000607092 EPHX4Q8IUS5 362 aa5.42□□□□□ -1.54
CUX1-220ENST00000607092 NUDCD3Q8IVD9 361 aa5.42□□□□□ -1.54
CUX1-220ENST00000607092 C1orf174Q8IYL3 243 aa5.42□□□□□ -1.54
CUX1-220ENST00000607092 CADM2Q8N3J6 435 aa5.42□□□□□ -1.54
CUX1-220ENST00000607092 OR1J2Q8NGS2 313 aa5.42□□□□□ -1.54
CUX1-220ENST00000607092 OR6S1Q8NH40 331 aa5.42□□□□□ -1.54
CUX1-220ENST00000607092 OR52P1PQ8NH57 321 aa5.42□□□□□ -1.54
CUX1-220ENST00000607092 CLDND2Q8NHS1 167 aa5.42□□□□□ -1.54
CUX1-220ENST00000607092 DNAJA4Q8WW22 397 aaPredicted RBP5.42□□□□□ -1.54
CUX1-220ENST00000607092 RAB1CQ92928 201 aa5.42□□□□□ -1.54
CUX1-220ENST00000607092 SLC38A4Q969I6 547 aa5.42□□□□□ -1.54
CUX1-220ENST00000607092 ZG16BQ96DA0 208 aa5.42□□□□□ -1.54
CUX1-220ENST00000607092 DNAJA3Q96EY1 480 aa5.42□□□□□ -1.54
CUX1-220ENST00000607092 C3orf30Q96M34 536 aa5.42□□□□□ -1.54
CUX1-220ENST00000607092 GPA33Q99795 319 aa5.42□□□□□ -1.54
CUX1-220ENST00000607092 SOX7Q9BT81 388 aa5.42□□□□□ -1.54
CUX1-220ENST00000607092 MECRQ9BV79 373 aa5.42□□□□□ -1.54
CUX1-220ENST00000607092 ZNF747Q9BV97 191 aa5.42□□□□□ -1.54
CUX1-220ENST00000607092 SPATA9Q9BWV2 254 aa5.42□□□□□ -1.54
CUX1-220ENST00000607092 RACGAP1Q9H0H5 632 aa5.42□□□□□ -1.54
CUX1-220ENST00000607092 RAD21L1Q9H4I0 556 aa5.42□□□□□ -1.54
CUX1-220ENST00000607092 GPR35Q9HC97 309 aa5.42□□□□□ -1.54
CUX1-220ENST00000607092 NKIRAS2Q9NYR9 191 aa5.42□□□□□ -1.54
CUX1-220ENST00000607092 GIMAP2Q9UG22 337 aa5.42□□□□□ -1.54
CUX1-220ENST00000607092 SLC7A8Q9UHI5 535 aa5.42□□□□□ -1.54
CUX1-220ENST00000607092 ZDHHC2Q9UIJ5 367 aa5.42□□□□□ -1.54
CUX1-220ENST00000607092 POFUT2Q9Y2G5 429 aa5.42□□□□□ -1.54
CUX1-220ENST00000607092 RAP2CQ9Y3L5 183 aa5.42□□□□□ -1.54
CUX1-220ENST00000607092 GPR45Q9Y5Y3 372 aa5.42□□□□□ -1.54
CUX1-220ENST00000607092 TRAV36DV7A0A075B6V5 113 aa5.41□□□□□ -1.54
CUX1-220ENST00000607092 PPIAL4EA0A075B759 164 aa5.41□□□□□ -1.54
CUX1-220ENST00000607092 PPIAL4CA0A0B4J2A2 164 aa5.41□□□□□ -1.54
CUX1-220ENST00000607092 TMEM129A0AVI4 362 aa5.41□□□□□ -1.54
CUX1-220ENST00000607092 CLDN24A6NM45 220 aa5.41□□□□□ -1.54
CUX1-220ENST00000607092 ZNF726A6NNF4 738 aa5.41□□□□□ -1.54
CUX1-220ENST00000607092 CLDN25C9JDP6 229 aa5.41□□□□□ -1.54
CUX1-220ENST00000607092 PPIAL4DF5H284 164 aa5.41□□□□□ -1.54
CUX1-220ENST00000607092 NR5A2O00482 541 aa5.41□□□□□ -1.54
CUX1-220ENST00000607092 RFXANKO14593 260 aa5.41□□□□□ -1.54
CUX1-220ENST00000607092 POLR3GO15318 223 aaPredicted RBP5.41□□□□□ -1.54
CUX1-220ENST00000607092 BIRC5O15392 142 aa5.41□□□□□ -1.54
CUX1-220ENST00000607092 FZD7O75084 574 aa5.41□□□□□ -1.54
CUX1-220ENST00000607092 FARS2O95363 451 aaKnown RBP5.41□□□□□ -1.54
CUX1-220ENST00000607092 ANP32DO95626 131 aa5.41□□□□□ -1.54
CUX1-220ENST00000607092 SERPINE1P05121 402 aa5.41□□□□□ -1.54
CUX1-220ENST00000607092 IL6P05231 212 aa5.41□□□□□ -1.54
CUX1-220ENST00000607092 BPGMP07738 259 aa5.41□□□□□ -1.54
CUX1-220ENST00000607092 PPIAL4FP0DN26 164 aa5.41□□□□□ -1.54
CUX1-220ENST00000607092 CD79AP11912 226 aa5.41□□□□□ -1.54
CUX1-220ENST00000607092 NQO1P15559 274 aaKnown RBP5.41□□□□□ -1.54
CUX1-220ENST00000607092 EGR1P18146 543 aa5.41□□□□□ -1.54
CUX1-220ENST00000607092 ADRA2CP18825 462 aa5.41□□□□□ -1.54
Retrieved 100 of 20,778 RNA–protein pairs in 39.3 ms