RNA–Protein interactions for RNA: ENST00000597995.1

TRIM28-212, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 702 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-212ENST00000597995 A0A1B0GWA3 101 aa10.83□□□□□ -0.68
TRIM28-212ENST00000597995 hCG_2039718K7EN88 272 aa10.83□□□□□ -0.68
TRIM28-212ENST00000597995 FBP2O00757 339 aa10.83□□□□□ -0.68
TRIM28-212ENST00000597995 FZD7O75084 574 aa10.83□□□□□ -0.68
TRIM28-212ENST00000597995 UPK3AO75631 287 aa10.83□□□□□ -0.68
TRIM28-212ENST00000597995 MFN2O95140 757 aa10.83□□□□□ -0.68
TRIM28-212ENST00000597995 PCMT1P22061 227 aa10.83□□□□□ -0.68
TRIM28-212ENST00000597995 APEX1P27695 318 aaKnown RBP10.83□□□□□ -0.68
TRIM28-212ENST00000597995 AQP1P29972 269 aa10.83□□□□□ -0.68
TRIM28-212ENST00000597995 THBS4P35443 961 aa10.83□□□□□ -0.68
TRIM28-212ENST00000597995 SRP14P37108 136 aaKnown RBP10.83□□□□□ -0.68
TRIM28-212ENST00000597995 PCBP3P57721 371 aaKnown RBP10.83□□□□□ -0.68
TRIM28-212ENST00000597995 MTPNP58546 118 aa10.83□□□□□ -0.68
TRIM28-212ENST00000597995 ROR2Q01974 943 aaKnown RBP10.83□□□□□ -0.68
TRIM28-212ENST00000597995 POU3F1Q03052 451 aaPredicted RBP10.83□□□□□ -0.68
TRIM28-212ENST00000597995 LGALS3BPQ08380 585 aa10.83□□□□□ -0.68
TRIM28-212ENST00000597995 DHDDSQ86SQ9 333 aa10.83□□□□□ -0.68
TRIM28-212ENST00000597995 MEX3DQ86XN8 651 aaKnown RBP10.83□□□□□ -0.68
TRIM28-212ENST00000597995 CCDC36Q8IYA8 594 aa10.83□□□□□ -0.68
TRIM28-212ENST00000597995 LSMEM1Q8N8F7 131 aa10.83□□□□□ -0.68
TRIM28-212ENST00000597995 MFSD8Q8NHS3 518 aa10.83□□□□□ -0.68
TRIM28-212ENST00000597995 STK35Q8TDR2 534 aa10.83□□□□□ -0.68
TRIM28-212ENST00000597995 NELFAQ9H3P2 528 aa10.83□□□□□ -0.68
TRIM28-212ENST00000597995 ARMC7Q9H6L4 198 aa10.83□□□□□ -0.68
TRIM28-212ENST00000597995 SEC14L4Q9UDX3 406 aa10.83□□□□□ -0.68
TRIM28-212ENST00000597995 NDUFAF1Q9Y375 327 aa10.83□□□□□ -0.68
TRIM28-212ENST00000597995 A0A096LPE4 126 aa10.82□□□□□ -0.68
TRIM28-212ENST00000597995 A0A1W2PPZ6 126 aa10.82□□□□□ -0.68
TRIM28-212ENST00000597995 TMEM129A0AVI4 362 aa10.82□□□□□ -0.68
TRIM28-212ENST00000597995 EVPLLA8MZ36 301 aa10.82□□□□□ -0.68
TRIM28-212ENST00000597995 ZNF432O94892 652 aa10.82□□□□□ -0.68
TRIM28-212ENST00000597995 AHSA1O95433 338 aa10.82□□□□□ -0.68
TRIM28-212ENST00000597995 PNMTP11086 282 aa10.82□□□□□ -0.68
TRIM28-212ENST00000597995 SLC6A2P23975 617 aa10.82□□□□□ -0.68
TRIM28-212ENST00000597995 ARR3P36575 388 aa10.82□□□□□ -0.68
TRIM28-212ENST00000597995 RPS5P46782 204 aaKnown RBP10.82□□□□□ -0.68
TRIM28-212ENST00000597995 GZMMP51124 257 aa10.82□□□□□ -0.68
TRIM28-212ENST00000597995 DVL1P1P54792 670 aaPredicted RBP10.82□□□□□ -0.68
TRIM28-212ENST00000597995 CDH15P55291 814 aa10.82□□□□□ -0.68
TRIM28-212ENST00000597995 TUBA1BP68363 451 aa10.82□□□□□ -0.68
TRIM28-212ENST00000597995 TUBA4AP68366 448 aa10.82□□□□□ -0.68
TRIM28-212ENST00000597995 SF3A3Q12874 501 aaKnown RBP eCLIP10.82□□□□□ -0.683e-7■■■■■ 27.3
TRIM28-212ENST00000597995 RIN1Q13671 783 aa10.82□□□□□ -0.68
TRIM28-212ENST00000597995 TUBA1AQ71U36 451 aa10.82□□□□□ -0.68
TRIM28-212ENST00000597995 SPATA21Q7Z572 469 aa10.82□□□□□ -0.68
TRIM28-212ENST00000597995 KDM8Q8N371 416 aa10.82□□□□□ -0.68
TRIM28-212ENST00000597995 SVOPLQ8N434 492 aa10.82□□□□□ -0.68
TRIM28-212ENST00000597995 HIPK4Q8NE63 616 aa10.82□□□□□ -0.68
TRIM28-212ENST00000597995 GPR32P1Q8NGA4 272 aa10.82□□□□□ -0.68
TRIM28-212ENST00000597995 UBASH3BQ8TF42 649 aa10.82□□□□□ -0.68
TRIM28-212ENST00000597995 TSPEARQ8WU66 669 aa10.82□□□□□ -0.68
TRIM28-212ENST00000597995 TAAR8Q969N4 342 aa10.82□□□□□ -0.68
TRIM28-212ENST00000597995 SIKE1Q9BRV8 207 aa10.82□□□□□ -0.68
TRIM28-212ENST00000597995 TMEM120AQ9BXJ8 343 aa10.82□□□□□ -0.68
TRIM28-212ENST00000597995 KAT8Q9H7Z6 458 aaKnown RBP10.82□□□□□ -0.68
TRIM28-212ENST00000597995 SEC61A2Q9H9S3 476 aa10.82□□□□□ -0.68
TRIM28-212ENST00000597995 C12orf10Q9HB07 376 aa10.82□□□□□ -0.68
TRIM28-212ENST00000597995 CACYBPQ9HB71 228 aaKnown RBP10.82□□□□□ -0.68
TRIM28-212ENST00000597995 B3GAT1Q9P2W7 334 aa10.82□□□□□ -0.68
TRIM28-212ENST00000597995 TRIM33Q9UPN9 1127 aa10.82□□□□□ -0.68
TRIM28-212ENST00000597995 CORO2BQ9UQ03 480 aa10.82□□□□□ -0.68
TRIM28-212ENST00000597995 A0A0A6YYJ9 748 aa10.81□□□□□ -0.68
TRIM28-212ENST00000597995 IGHV2OR16-5A0A0B4J2B6 119 aa10.81□□□□□ -0.68
TRIM28-212ENST00000597995 OPN1SWP03999 348 aa10.81□□□□□ -0.68
TRIM28-212ENST00000597995 IFNGR1P15260 489 aa10.81□□□□□ -0.68
TRIM28-212ENST00000597995 ZNF43P17038 809 aa10.81□□□□□ -0.68
TRIM28-212ENST00000597995 ITGA2P17301 1181 aa10.81□□□□□ -0.68
TRIM28-212ENST00000597995 IL2RGP31785 369 aa10.81□□□□□ -0.68
TRIM28-212ENST00000597995 CRYBA2P53672 197 aa10.81□□□□□ -0.68
TRIM28-212ENST00000597995 ARF1P84077 181 aaKnown RBP10.81□□□□□ -0.68
TRIM28-212ENST00000597995 NPTX1Q15818 432 aa10.81□□□□□ -0.68
TRIM28-212ENST00000597995 DUSP7Q16829 419 aa10.81□□□□□ -0.68
TRIM28-212ENST00000597995 METTL21CQ5VZV1 264 aa10.81□□□□□ -0.68
TRIM28-212ENST00000597995 DEF8Q6ZN54 512 aa10.81□□□□□ -0.68
TRIM28-212ENST00000597995 NET1Q7Z628 596 aaPredicted RBP10.81□□□□□ -0.68
TRIM28-212ENST00000597995 KRT73Q86Y46 540 aa10.81□□□□□ -0.68
TRIM28-212ENST00000597995 SMYD1Q8NB12 490 aa10.81□□□□□ -0.68
TRIM28-212ENST00000597995 OR4D11Q8NGI4 311 aa10.81□□□□□ -0.68
TRIM28-212ENST00000597995 SLC25A36Q96CQ1 311 aa10.81□□□□□ -0.68
TRIM28-212ENST00000597995 OXGR1Q96P68 337 aa10.81□□□□□ -0.68
TRIM28-212ENST00000597995 SNX18Q96RF0 628 aa10.81□□□□□ -0.68
TRIM28-212ENST00000597995 SPATA5L1Q9BVQ7 753 aa10.81□□□□□ -0.68
TRIM28-212ENST00000597995 DYNLRB1Q9NP97 96 aa10.81□□□□□ -0.68
TRIM28-212ENST00000597995 FGFR1OP2Q9NVK5 253 aa10.81□□□□□ -0.68
TRIM28-212ENST00000597995 A0A0B4J2E0 115 aa10.8□□□□□ -0.68
TRIM28-212ENST00000597995 LOC102725191A0A1B0GVB3 256 aa10.8□□□□□ -0.68
TRIM28-212ENST00000597995 A0A1B0GX12 115 aa10.8□□□□□ -0.68
TRIM28-212ENST00000597995 M0QX08 132 aa10.8□□□□□ -0.68
TRIM28-212ENST00000597995 FXYD1O00168 92 aa10.8□□□□□ -0.68
TRIM28-212ENST00000597995 ANGPT2O15123 496 aa10.8□□□□□ -0.68
TRIM28-212ENST00000597995 SLC43A1O75387 559 aa10.8□□□□□ -0.68
TRIM28-212ENST00000597995 IGFBP1P08833 259 aaPredicted RBP10.8□□□□□ -0.68
TRIM28-212ENST00000597995 CELA3BP08861 270 aa10.8□□□□□ -0.68
TRIM28-212ENST00000597995 EVX1P49640 407 aa10.8□□□□□ -0.68
TRIM28-212ENST00000597995 CLDN17P56750 224 aa10.8□□□□□ -0.68
TRIM28-212ENST00000597995 RBBP4Q09028 425 aa10.8□□□□□ -0.68
TRIM28-212ENST00000597995 NFYCQ13952 458 aa10.8□□□□□ -0.68
TRIM28-212ENST00000597995 OR1Q1Q15612 314 aa10.8□□□□□ -0.68
TRIM28-212ENST00000597995 ALG10BQ5I7T1 473 aa10.8□□□□□ -0.68
TRIM28-212ENST00000597995 MYPOPQ86VE0 399 aaPredicted RBP10.8□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 25.5 ms