RNA–Protein interactions for RNA: ENST00000597618.5

TRIM28-210, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 609 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-210ENST00000597618 MARCOQ9UEW3 520 aaPredicted RBP8.64□□□□□ -1.03
TRIM28-210ENST00000597618 NUP50Q9UKX7 468 aa8.64□□□□□ -1.03
TRIM28-210ENST00000597618 WIPI2Q9Y4P8 454 aa8.64□□□□□ -1.03
TRIM28-210ENST00000597618 PPIAL4EA0A075B759 164 aa8.63□□□□□ -1.03
TRIM28-210ENST00000597618 PPIAL4CA0A0B4J2A2 164 aa8.63□□□□□ -1.03
TRIM28-210ENST00000597618 PRSS51A0A1B0GVH4 220 aa8.63□□□□□ -1.03
TRIM28-210ENST00000597618 SLC22A23A1A5C7 686 aa8.63□□□□□ -1.03
TRIM28-210ENST00000597618 CDHR4A6H8M9 788 aa8.63□□□□□ -1.03
TRIM28-210ENST00000597618 FTCDNL1E5RQL4 147 aa8.63□□□□□ -1.03
TRIM28-210ENST00000597618 PPIAL4DF5H284 164 aa8.63□□□□□ -1.03
TRIM28-210ENST00000597618 M0R3G1 203 aa8.63□□□□□ -1.03
TRIM28-210ENST00000597618 NPHS1O60500 1241 aa8.63□□□□□ -1.03
TRIM28-210ENST00000597618 CPSF4O95639 269 aaKnown RBP8.63□□□□□ -1.03
TRIM28-210ENST00000597618 PPIAL4FP0DN26 164 aa8.63□□□□□ -1.03
TRIM28-210ENST00000597618 PTDSS1P48651 473 aaKnown RBP8.63□□□□□ -1.03
TRIM28-210ENST00000597618 ANXA11P50995 505 aaKnown RBP8.63□□□□□ -1.03
TRIM28-210ENST00000597618 ATP4BP51164 291 aa8.63□□□□□ -1.03
TRIM28-210ENST00000597618 TXNL4AP83876 142 aaKnown RBP8.63□□□□□ -1.03
TRIM28-210ENST00000597618 PIGFQ07326 219 aa8.63□□□□□ -1.03
TRIM28-210ENST00000597618 SYPL1Q16563 259 aa8.63□□□□□ -1.03
TRIM28-210ENST00000597618 ALKBH6Q3KRA9 238 aa8.63□□□□□ -1.03
TRIM28-210ENST00000597618 ANXA8L1Q5VT79 327 aa8.63□□□□□ -1.03
TRIM28-210ENST00000597618 RGS7BPQ6MZT1 257 aaPredicted RBP8.63□□□□□ -1.03
TRIM28-210ENST00000597618 SYT10Q6XYQ8 523 aa8.63□□□□□ -1.03
TRIM28-210ENST00000597618 ZNF813Q6ZN06 617 aa8.63□□□□□ -1.03
TRIM28-210ENST00000597618 ZNF627Q7L945 461 aa8.63□□□□□ -1.03
TRIM28-210ENST00000597618 ANKRD46Q86W74 232 aa8.63□□□□□ -1.03
TRIM28-210ENST00000597618 SNX32Q86XE0 403 aa8.63□□□□□ -1.03
TRIM28-210ENST00000597618 WDFY1Q8IWB7 410 aa8.63□□□□□ -1.03
TRIM28-210ENST00000597618 PEX5LQ8IYB4 626 aa8.63□□□□□ -1.03
TRIM28-210ENST00000597618 TMEM123Q8N131 208 aa8.63□□□□□ -1.03
TRIM28-210ENST00000597618 KDM8Q8N371 416 aa8.63□□□□□ -1.03
TRIM28-210ENST00000597618 VPS37AQ8NEZ2 397 aa8.63□□□□□ -1.03
TRIM28-210ENST00000597618 RAB1CQ92928 201 aa8.63□□□□□ -1.03
TRIM28-210ENST00000597618 SLC25A36Q96CQ1 311 aa8.63□□□□□ -1.03
TRIM28-210ENST00000597618 TUBGCP3Q96CW5 907 aa8.63□□□□□ -1.03
TRIM28-210ENST00000597618 C1orf147Q96MC9 270 aaPredicted RBP8.63□□□□□ -1.03
TRIM28-210ENST00000597618 ZNF75AQ96N20 296 aa8.63□□□□□ -1.03
TRIM28-210ENST00000597618 OR2M2Q96R28 347 aa8.63□□□□□ -1.03
TRIM28-210ENST00000597618 PKP2Q99959 881 aa8.63□□□□□ -1.03
TRIM28-210ENST00000597618 GAL3ST1Q99999 423 aa8.63□□□□□ -1.03
TRIM28-210ENST00000597618 SLC35A5Q9BS91 424 aa8.63□□□□□ -1.03
TRIM28-210ENST00000597618 B3GAT2Q9NPZ5 323 aa8.63□□□□□ -1.03
TRIM28-210ENST00000597618 ASIC5Q9NY37 505 aa8.63□□□□□ -1.03
TRIM28-210ENST00000597618 SLCO1C1Q9NYB5 712 aa8.63□□□□□ -1.03
TRIM28-210ENST00000597618 NKIRAS2Q9NYR9 191 aa8.63□□□□□ -1.03
TRIM28-210ENST00000597618 PLEK2Q9NYT0 353 aa8.63□□□□□ -1.03
TRIM28-210ENST00000597618 NOP53Q9NZM5 478 aaKnown RBP8.63□□□□□ -1.03
TRIM28-210ENST00000597618 TAAR3PQ9P1P4 343 aa8.63□□□□□ -1.03
TRIM28-210ENST00000597618 AIM2O14862 343 aa8.62□□□□□ -1.03
TRIM28-210ENST00000597618 TPD52L2O43399 206 aaKnown RBP8.62□□□□□ -1.03
TRIM28-210ENST00000597618 FZD7O75084 574 aa8.62□□□□□ -1.03
TRIM28-210ENST00000597618 UBL3O95164 117 aa8.62□□□□□ -1.03
TRIM28-210ENST00000597618 GKN3PP0CG01 181 aa8.62□□□□□ -1.03
TRIM28-210ENST00000597618 B4GALT1P15291 398 aa8.62□□□□□ -1.03
TRIM28-210ENST00000597618 NCF2P19878 526 aaPredicted RBP8.62□□□□□ -1.03
TRIM28-210ENST00000597618 MDKP21741 143 aaPredicted RBP8.62□□□□□ -1.03
TRIM28-210ENST00000597618 ACAA2P42765 397 aaKnown RBP8.62□□□□□ -1.03
TRIM28-210ENST00000597618 RPS5P46782 204 aaKnown RBP8.62□□□□□ -1.03
TRIM28-210ENST00000597618 GIPRP48546 466 aa8.62□□□□□ -1.03
TRIM28-210ENST00000597618 KLF3P57682 345 aaPredicted RBP8.62□□□□□ -1.03
TRIM28-210ENST00000597618 LCN2P80188 198 aa8.62□□□□□ -1.03
TRIM28-210ENST00000597618 EMX2Q04743 252 aa8.62□□□□□ -1.03
TRIM28-210ENST00000597618 HFEQ30201 348 aa8.62□□□□□ -1.03
TRIM28-210ENST00000597618 LIN52Q52LA3 116 aa8.62□□□□□ -1.03
TRIM28-210ENST00000597618 LEG1Q6P5S2 330 aa8.62□□□□□ -1.03
TRIM28-210ENST00000597618 USP51Q70EK9 711 aa8.62□□□□□ -1.03
TRIM28-210ENST00000597618 RNF130Q86XS8 419 aa8.62□□□□□ -1.03
TRIM28-210ENST00000597618 PTDSS2Q9BVG9 487 aa8.62□□□□□ -1.03
TRIM28-210ENST00000597618 MMP27Q9H306 513 aa8.62□□□□□ -1.03
TRIM28-210ENST00000597618 SAP30LQ9HAJ7 183 aa8.62□□□□□ -1.03
TRIM28-210ENST00000597618 DECR2Q9NUI1 292 aa8.62□□□□□ -1.03
TRIM28-210ENST00000597618 RLIMQ9NVW2 624 aa8.62□□□□□ -1.03
TRIM28-210ENST00000597618 ZNF69Q9UC07 566 aa8.62□□□□□ -1.03
TRIM28-210ENST00000597618 POFUT2Q9Y2G5 429 aa8.62□□□□□ -1.03
TRIM28-210ENST00000597618 MMP24Q9Y5R2 645 aa8.62□□□□□ -1.03
TRIM28-210ENST00000597618 IGLV3-9A0A075B6K5 115 aa8.61□□□□□ -1.03
TRIM28-210ENST00000597618 A0A1B0GUS0 222 aa8.61□□□□□ -1.03
TRIM28-210ENST00000597618 LOC102725191A0A1B0GVB3 256 aa8.61□□□□□ -1.03
TRIM28-210ENST00000597618 M0QZ24 198 aa8.61□□□□□ -1.03
TRIM28-210ENST00000597618 TRAF3IP2O43734 574 aaPredicted RBP8.61□□□□□ -1.03
TRIM28-210ENST00000597618 FOXH1O75593 365 aa8.61□□□□□ -1.03
TRIM28-210ENST00000597618 MT-ND5P03915 603 aa8.61□□□□□ -1.03
TRIM28-210ENST00000597618 NR2F1P10589 423 aa8.61□□□□□ -1.03
TRIM28-210ENST00000597618 KRT4P19013 534 aa8.61□□□□□ -1.03
TRIM28-210ENST00000597618 RAB1AP62820 205 aa8.61□□□□□ -1.03
TRIM28-210ENST00000597618 CAMK2DQ13557 499 aa8.61□□□□□ -1.03
TRIM28-210ENST00000597618 MFSD13AQ14CX5 517 aa8.61□□□□□ -1.03
TRIM28-210ENST00000597618 SLC9A3R2Q15599 337 aa8.61□□□□□ -1.03
TRIM28-210ENST00000597618 CHI3L2Q15782 390 aa8.61□□□□□ -1.03
TRIM28-210ENST00000597618 WHAMMP3Q1A5X7 153 aa8.61□□□□□ -1.03
TRIM28-210ENST00000597618 SMU1Q2TAY7 513 aa8.61□□□□□ -1.03
TRIM28-210ENST00000597618 PHYHD1Q5SRE7 291 aa8.61□□□□□ -1.03
TRIM28-210ENST00000597618 RNF220Q5VTB9 566 aa8.61□□□□□ -1.03
TRIM28-210ENST00000597618 CARD17Q5XLA6 110 aa8.61□□□□□ -1.03
TRIM28-210ENST00000597618 ATG16L1Q676U5 607 aa8.61□□□□□ -1.03
TRIM28-210ENST00000597618 ZNF836Q6ZNA1 936 aa8.61□□□□□ -1.03
TRIM28-210ENST00000597618 C17orf107Q6ZR85 190 aa8.61□□□□□ -1.03
TRIM28-210ENST00000597618 C20orf196Q8IYI0 205 aa8.61□□□□□ -1.03
TRIM28-210ENST00000597618 TRIML2Q8N7C3 387 aa8.61□□□□□ -1.03
Retrieved 100 of 20,778 RNA–protein pairs in 34.1 ms