RNA–Protein interactions for RNA: ENST00000596814.5

VRK3-212, Transcript of vaccinia related kinase 3, humanhuman

TSL 2

Gene VRK3, Length 1,736 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-212ENST00000596814 FAM26EQ8N5C1 309 aa13.09□□□□□ -0.31
VRK3-212ENST00000596814 HDAC2Q92769 488 aaKnown RBP13.09□□□□□ -0.31
VRK3-212ENST00000596814 LRR1Q96L50 414 aa13.09□□□□□ -0.31
VRK3-212ENST00000596814 PRDM14Q9GZV8 571 aa13.09□□□□□ -0.31
VRK3-212ENST00000596814 FN3KQ9H479 309 aa13.09□□□□□ -0.31
VRK3-212ENST00000596814 CLN6Q9NWW5 311 aa13.09□□□□□ -0.31
VRK3-212ENST00000596814 DNAJC27Q9NZQ0 273 aa13.09□□□□□ -0.31
VRK3-212ENST00000596814 KLHL13Q9P2N7 655 aa13.09□□□□□ -0.31
VRK3-212ENST00000596814 MCTS1Q9ULC4 181 aaKnown RBP13.09□□□□□ -0.31
VRK3-212ENST00000596814 A0A1B0GTH9 108 aa13.08□□□□□ -0.32
VRK3-212ENST00000596814 TRAF3IP2O43734 574 aaPredicted RBP13.08□□□□□ -0.32
VRK3-212ENST00000596814 SYNGR4O95473 234 aa13.08□□□□□ -0.32
VRK3-212ENST00000596814 IFNGR1P15260 489 aa13.08□□□□□ -0.32
VRK3-212ENST00000596814 ZNF43P17038 809 aa13.08□□□□□ -0.32
VRK3-212ENST00000596814 KLRB1Q12918 225 aa13.08□□□□□ -0.32
VRK3-212ENST00000596814 CRMP1Q14194 572 aa13.08□□□□□ -0.32
VRK3-212ENST00000596814 POU4F3Q15319 338 aa13.08□□□□□ -0.32
VRK3-212ENST00000596814 MESTQ5EB52 335 aa13.08□□□□□ -0.32
VRK3-212ENST00000596814 TMEM201Q5SNT2 666 aa13.08□□□□□ -0.32
VRK3-212ENST00000596814 LAIR2Q6ISS4 152 aa13.08□□□□□ -0.32
VRK3-212ENST00000596814 SLC35D2Q76EJ3 337 aa13.08□□□□□ -0.32
VRK3-212ENST00000596814 FCRLAQ7L513 359 aa13.08□□□□□ -0.32
VRK3-212ENST00000596814 PM20D2Q8IYS1 436 aa13.08□□□□□ -0.32
VRK3-212ENST00000596814 GHDCQ8N2G8 530 aa13.08□□□□□ -0.32
VRK3-212ENST00000596814 CISD2Q8N5K1 135 aaKnown RBP13.08□□□□□ -0.32
VRK3-212ENST00000596814 ARIH2OSQ8N7S6 290 aa13.08□□□□□ -0.32
VRK3-212ENST00000596814 SLC37A3Q8NCC5 494 aa13.08□□□□□ -0.32
VRK3-212ENST00000596814 ZNF519Q8TB69 540 aa13.08□□□□□ -0.32
VRK3-212ENST00000596814 ASB10Q8WXI3 467 aa13.08□□□□□ -0.32
VRK3-212ENST00000596814 ROBO4Q8WZ75 1007 aa13.08□□□□□ -0.32
VRK3-212ENST00000596814 Q96MT0 163 aa13.08□□□□□ -0.32
VRK3-212ENST00000596814 HINT3Q9NQE9 182 aaKnown RBP13.08□□□□□ -0.32
VRK3-212ENST00000596814 OR14I1A6ND48 311 aa13.08□□□□□ -0.32
VRK3-212ENST00000596814 FAM183AA6NL82 134 aa13.08□□□□□ -0.32
VRK3-212ENST00000596814 PRR23D1E9PI22 279 aaPredicted RBP13.08□□□□□ -0.32
VRK3-212ENST00000596814 NPIPA2E9PIF3 369 aa13.08□□□□□ -0.32
VRK3-212ENST00000596814 NPIPA3F8WFD2 350 aa13.08□□□□□ -0.32
VRK3-212ENST00000596814 ERVH48-1M5A8F1 160 aa13.08□□□□□ -0.32
VRK3-212ENST00000596814 SLC1A7O00341 560 aa13.08□□□□□ -0.32
VRK3-212ENST00000596814 XKRYO14609 159 aa13.08□□□□□ -0.32
VRK3-212ENST00000596814 BCL10O95999 233 aa13.08□□□□□ -0.32
VRK3-212ENST00000596814 PRR23D2P0DMB1 279 aaPredicted RBP13.08□□□□□ -0.32
VRK3-212ENST00000596814 PAICSP22234 425 aaKnown RBP13.08□□□□□ -0.32
VRK3-212ENST00000596814 ACVR1BP36896 505 aa13.08□□□□□ -0.32
VRK3-212ENST00000596814 PON3Q15166 354 aa13.08□□□□□ -0.32
VRK3-212ENST00000596814 OCLNQ16625 522 aa13.08□□□□□ -0.32
VRK3-212ENST00000596814 SMN1Q16637 294 aaKnown RBP13.08□□□□□ -0.32
VRK3-212ENST00000596814 SLC25A30Q5SVS4 291 aa13.08□□□□□ -0.32
VRK3-212ENST00000596814 ZNF362Q5T0B9 420 aaPredicted RBP13.08□□□□□ -0.32
VRK3-212ENST00000596814 ARMC4Q5T2S8 1044 aa13.08□□□□□ -0.32
VRK3-212ENST00000596814 MEDAGQ5VYS4 303 aa13.08□□□□□ -0.32
VRK3-212ENST00000596814 FAM205BPQ63HN1 556 aa13.08□□□□□ -0.32
VRK3-212ENST00000596814 ZNF324BQ6AW86 544 aaPredicted RBP13.08□□□□□ -0.32
VRK3-212ENST00000596814 CXXC5Q7LFL8 322 aaKnown RBP13.08□□□□□ -0.32
VRK3-212ENST00000596814 ADCK1Q86TW2 530 aa13.08□□□□□ -0.32
VRK3-212ENST00000596814 CYB561A3Q8NBI2 242 aa13.08□□□□□ -0.32
VRK3-212ENST00000596814 OR9K2Q8NGE7 335 aa13.08□□□□□ -0.32
VRK3-212ENST00000596814 OTULINQ96BN8 352 aa13.08□□□□□ -0.32
VRK3-212ENST00000596814 NMNAT3Q96T66 252 aa13.08□□□□□ -0.32
VRK3-212ENST00000596814 TUBA1CQ9BQE3 449 aa13.08□□□□□ -0.32
VRK3-212ENST00000596814 SF3B5Q9BWJ5 86 aaKnown RBP13.08□□□□□ -0.32
VRK3-212ENST00000596814 MED29Q9NX70 200 aa13.08□□□□□ -0.32
VRK3-212ENST00000596814 MYRFQ9Y2G1 1151 aa13.08□□□□□ -0.32
VRK3-212ENST00000596814 BSNQ9UPA5 3926 aa13.07□□□□□ -0.32
VRK3-212ENST00000596814 SH3D21A4FU49 640 aa13.07□□□□□ -0.32
VRK3-212ENST00000596814 A6NIZ1 184 aa13.07□□□□□ -0.32
VRK3-212ENST00000596814 KDM4EB2RXH2 506 aaPredicted RBP13.07□□□□□ -0.32
VRK3-212ENST00000596814 ARHGEF9O43307 516 aa13.07□□□□□ -0.32
VRK3-212ENST00000596814 CYTIPO60759 359 aa13.07□□□□□ -0.32
VRK3-212ENST00000596814 ENTPD6O75354 484 aa13.07□□□□□ -0.32
VRK3-212ENST00000596814 SMNDC1O75940 238 aaKnown RBP eCLIP13.07□□□□□ -0.32
VRK3-212ENST00000596814 TNFAIP8O95379 198 aa13.07□□□□□ -0.32
VRK3-212ENST00000596814 RPSAP08865 295 aaKnown RBP13.07□□□□□ -0.32
VRK3-212ENST00000596814 ACVR2AP27037 513 aa13.07□□□□□ -0.32
VRK3-212ENST00000596814 NUDT6P53370 316 aa13.07□□□□□ -0.32
VRK3-212ENST00000596814 CXCR4P61073 352 aa13.07□□□□□ -0.32
VRK3-212ENST00000596814 RAP1BP61224 184 aa13.07□□□□□ -0.32
VRK3-212ENST00000596814 RAP1AP62834 184 aa13.07□□□□□ -0.32
VRK3-212ENST00000596814 ITGADQ13349 1161 aa13.07□□□□□ -0.32
VRK3-212ENST00000596814 SLC17A1Q14916 467 aa13.07□□□□□ -0.32
VRK3-212ENST00000596814 KRTCAP3Q53RY4 240 aa13.07□□□□□ -0.32
VRK3-212ENST00000596814 RBM48Q5RL73 367 aaKnown RBP13.07□□□□□ -0.32
VRK3-212ENST00000596814 EEF1A1P5Q5VTE0 462 aa13.07□□□□□ -0.32
VRK3-212ENST00000596814 NXNL2Q5VZ03 156 aa13.07□□□□□ -0.32
VRK3-212ENST00000596814 PLBD1Q6P4A8 553 aa13.07□□□□□ -0.32
VRK3-212ENST00000596814 LEG1Q6P5S2 330 aa13.07□□□□□ -0.32
VRK3-212ENST00000596814 HDDC2Q7Z4H3 204 aa13.07□□□□□ -0.32
VRK3-212ENST00000596814 BCDIN3DQ7Z5W3 292 aaKnown RBP13.07□□□□□ -0.32
VRK3-212ENST00000596814 CPOQ8IVL8 374 aa13.07□□□□□ -0.32
VRK3-212ENST00000596814 NPEPL1Q8NDH3 523 aa13.07□□□□□ -0.32
VRK3-212ENST00000596814 BPIFB6Q8NFQ5 453 aa13.07□□□□□ -0.32
VRK3-212ENST00000596814 FAR1Q8WVX9 515 aa13.07□□□□□ -0.32
VRK3-212ENST00000596814 ZNF566Q969W8 418 aa13.07□□□□□ -0.32
VRK3-212ENST00000596814 ZNF582Q96NG8 517 aaPredicted RBP13.07□□□□□ -0.32
VRK3-212ENST00000596814 SVILO95425 2214 aa13.07□□□□□ -0.32
VRK3-212ENST00000596814 CLCA1A8K7I4 914 aa13.06□□□□□ -0.32
VRK3-212ENST00000596814 H7C1C5 153 aa13.06□□□□□ -0.32
VRK3-212ENST00000596814 M0R3G1 203 aa13.06□□□□□ -0.32
VRK3-212ENST00000596814 FAM20BO75063 409 aa13.06□□□□□ -0.32
VRK3-212ENST00000596814 RENP00797 406 aa13.06□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 51.2 ms