RNA–Protein interactions for RNA: ENST00000594090.5

VRK3-206, Transcript of vaccinia related kinase 3, humanhuman

TSL 1 (best)

Gene VRK3, Length 1,448 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-206ENST00000594090 C17orf78Q8N4C9 275 aa12.79□□□□□ -0.36
VRK3-206ENST00000594090 OR52N5Q8NH56 324 aa12.79□□□□□ -0.36
VRK3-206ENST00000594090 ACOT11Q8WXI4 607 aaPredicted RBP12.79□□□□□ -0.36
VRK3-206ENST00000594090 BPIFA2Q96DR5 249 aa12.79□□□□□ -0.36
VRK3-206ENST00000594090 TXNDC15Q96J42 360 aa12.79□□□□□ -0.36
VRK3-206ENST00000594090 MUC13Q9H3R2 512 aa12.79□□□□□ -0.36
VRK3-206ENST00000594090 ANKRD19PQ9H560 264 aa12.79□□□□□ -0.36
VRK3-206ENST00000594090 ST6GALNAC2Q9UJ37 374 aa12.79□□□□□ -0.36
VRK3-206ENST00000594090 FAM32AQ9Y421 112 aaKnown RBP12.79□□□□□ -0.36
VRK3-206ENST00000594090 SLC25A15Q9Y619 301 aa12.79□□□□□ -0.36
VRK3-206ENST00000594090 A0A087WUU8 490 aa12.78□□□□□ -0.36
VRK3-206ENST00000594090 HTR3EA5X5Y0 456 aa12.78□□□□□ -0.36
VRK3-206ENST00000594090 BLOC1S5-TXNDC5H3BN57 136 aa12.78□□□□□ -0.36
VRK3-206ENST00000594090 DIRAS1O95057 198 aa12.78□□□□□ -0.36
VRK3-206ENST00000594090 H1F0P07305 194 aaKnown RBP12.78□□□□□ -0.36
VRK3-206ENST00000594090 TSPAN19P0C672 248 aa12.78□□□□□ -0.36
VRK3-206ENST00000594090 ITGA2P17301 1181 aa12.78□□□□□ -0.36
VRK3-206ENST00000594090 CDH2P19022 906 aaPredicted RBP12.78□□□□□ -0.36
VRK3-206ENST00000594090 ATP6V1B2P21281 511 aa12.78□□□□□ -0.36
VRK3-206ENST00000594090 IQCCQ4KMZ1 466 aa12.78□□□□□ -0.36
VRK3-206ENST00000594090 NCMAPQ5T1S8 102 aa12.78□□□□□ -0.36
VRK3-206ENST00000594090 CARD17Q5XLA6 110 aa12.78□□□□□ -0.36
VRK3-206ENST00000594090 HMBOX1Q6NT76 420 aa12.78□□□□□ -0.36
VRK3-206ENST00000594090 NINJ1Q92982 152 aa12.78□□□□□ -0.36
VRK3-206ENST00000594090 BOD1Q96IK1 185 aa12.78□□□□□ -0.36
VRK3-206ENST00000594090 LRR1Q96L50 414 aa12.78□□□□□ -0.36
VRK3-206ENST00000594090 TMEM204Q9BSN7 226 aa12.78□□□□□ -0.36
VRK3-206ENST00000594090 SLC17A5Q9NRA2 495 aa12.78□□□□□ -0.36
VRK3-206ENST00000594090 NPAP1Q9NZP6 1156 aa12.78□□□□□ -0.36
VRK3-206ENST00000594090 A0A1W2PR80 420 aa12.77□□□□□ -0.37
VRK3-206ENST00000594090 A0A1W2PRQ8 180 aa12.77□□□□□ -0.37
VRK3-206ENST00000594090 ZNF726A6NNF4 738 aa12.77□□□□□ -0.37
VRK3-206ENST00000594090 RPL36A-HNRNPH2H7BZ11 118 aa12.77□□□□□ -0.37
VRK3-206ENST00000594090 M0R3G1 203 aa12.77□□□□□ -0.37
VRK3-206ENST00000594090 MAKP20794 623 aa12.77□□□□□ -0.37
VRK3-206ENST00000594090 HOXC12P31275 282 aa12.77□□□□□ -0.37
VRK3-206ENST00000594090 SH3BGRP55822 239 aaPredicted RBP12.77□□□□□ -0.37
VRK3-206ENST00000594090 BIDP55957 195 aa12.77□□□□□ -0.37
VRK3-206ENST00000594090 PRKCDQ05655 676 aa12.77□□□□□ -0.37
VRK3-206ENST00000594090 CAMK2DQ13557 499 aa12.77□□□□□ -0.37
VRK3-206ENST00000594090 DGCR6Q14129 220 aa12.77□□□□□ -0.37
VRK3-206ENST00000594090 MELKQ14680 651 aa12.77□□□□□ -0.37
VRK3-206ENST00000594090 MTX3Q5HYI7 312 aa12.77□□□□□ -0.37
VRK3-206ENST00000594090 FGD3Q5JSP0 725 aa12.77□□□□□ -0.37
VRK3-206ENST00000594090 PHYHD1Q5SRE7 291 aa12.77□□□□□ -0.37
VRK3-206ENST00000594090 LCN8Q6JVE9 175 aa12.77□□□□□ -0.37
VRK3-206ENST00000594090 TBPL2Q6SJ96 375 aa12.77□□□□□ -0.37
VRK3-206ENST00000594090 KLHL24Q6TFL4 600 aa12.77□□□□□ -0.37
VRK3-206ENST00000594090 CYP2R1Q6VVX0 501 aa12.77□□□□□ -0.37
VRK3-206ENST00000594090 ZNF704Q6ZNC4 412 aaPredicted RBP12.77□□□□□ -0.37
VRK3-206ENST00000594090 MBOAT2Q6ZWT7 520 aa12.77□□□□□ -0.37
VRK3-206ENST00000594090 SLC35D2Q76EJ3 337 aa12.77□□□□□ -0.37
VRK3-206ENST00000594090 MEX3DQ86XN8 651 aaKnown RBP12.77□□□□□ -0.37
VRK3-206ENST00000594090 C20orf196Q8IYI0 205 aa12.77□□□□□ -0.37
VRK3-206ENST00000594090 RNF113BQ8IZP6 322 aaKnown RBP12.77□□□□□ -0.37
VRK3-206ENST00000594090 WDR31Q8NA23 367 aa12.77□□□□□ -0.37
VRK3-206ENST00000594090 OR1K1Q8NGR3 316 aa12.77□□□□□ -0.37
VRK3-206ENST00000594090 SLC7A13Q8TCU3 470 aa12.77□□□□□ -0.37
VRK3-206ENST00000594090 MCUR1Q96AQ8 359 aa12.77□□□□□ -0.37
VRK3-206ENST00000594090 CLPTM1LQ96KA5 538 aa12.77□□□□□ -0.37
VRK3-206ENST00000594090 DHRS1Q96LJ7 313 aa12.77□□□□□ -0.37
VRK3-206ENST00000594090 ADAD1Q96M93 576 aaKnown RBP12.77□□□□□ -0.37
VRK3-206ENST00000594090 PIP5K1AQ99755 562 aa12.77□□□□□ -0.37
VRK3-206ENST00000594090 ESRP2Q9H6T0 727 aaKnown RBP12.77□□□□□ -0.37
VRK3-206ENST00000594090 CRLF2Q9HC73 371 aa12.77□□□□□ -0.37
VRK3-206ENST00000594090 GPR35Q9HC97 309 aa12.77□□□□□ -0.37
VRK3-206ENST00000594090 PLEKHA6Q9Y2H5 1048 aa12.77□□□□□ -0.37
VRK3-206ENST00000594090 HIF3AQ9Y2N7 669 aa12.77□□□□□ -0.37
VRK3-206ENST00000594090 AMDHD2Q9Y303 409 aa12.77□□□□□ -0.37
VRK3-206ENST00000594090 RAI1Q7Z5J4 1906 aaPredicted RBP12.77□□□□□ -0.37
VRK3-206ENST00000594090 PLAUP00749 431 aa12.76□□□□□ -0.37
VRK3-206ENST00000594090 F13BP05160 661 aa12.76□□□□□ -0.37
VRK3-206ENST00000594090 SAGP10523 405 aaPredicted RBP12.76□□□□□ -0.37
VRK3-206ENST00000594090 AQP2P41181 271 aa12.76□□□□□ -0.37
VRK3-206ENST00000594090 RPS4XP62701 263 aaKnown RBP12.76□□□□□ -0.37
VRK3-206ENST00000594090 BSPH1Q075Z2 132 aa12.76□□□□□ -0.37
VRK3-206ENST00000594090 TRIM25Q14258 630 aaKnown RBP12.76□□□□□ -0.37
VRK3-206ENST00000594090 CEACAM16Q2WEN9 425 aa12.76□□□□□ -0.37
VRK3-206ENST00000594090 TBRG1Q3YBR2 411 aa12.76□□□□□ -0.37
VRK3-206ENST00000594090 HIKESHIQ53FT3 197 aa12.76□□□□□ -0.37
VRK3-206ENST00000594090 PODNL1Q6PEZ8 512 aa12.76□□□□□ -0.37
VRK3-206ENST00000594090 DHFR2Q86XF0 187 aa12.76□□□□□ -0.37
VRK3-206ENST00000594090 OR6X1Q8NH79 312 aa12.76□□□□□ -0.37
VRK3-206ENST00000594090 MOSPD2Q8NHP6 518 aa12.76□□□□□ -0.37
VRK3-206ENST00000594090 CCDC124Q96CT7 223 aaKnown RBP12.76□□□□□ -0.37
VRK3-206ENST00000594090 THTPAQ9BU02 230 aa12.76□□□□□ -0.37
VRK3-206ENST00000594090 NELFAQ9H3P2 528 aa12.76□□□□□ -0.37
VRK3-206ENST00000594090 UBTD1Q9HAC8 227 aa12.76□□□□□ -0.37
VRK3-206ENST00000594090 IL1RAPQ9NPH3 570 aa12.76□□□□□ -0.37
VRK3-206ENST00000594090 B3GAT2Q9NPZ5 323 aa12.76□□□□□ -0.37
VRK3-206ENST00000594090 INIPQ9NRY2 104 aa12.76□□□□□ -0.37
VRK3-206ENST00000594090 RNF115Q9Y4L5 304 aa12.76□□□□□ -0.37
VRK3-206ENST00000594090 NOTCH2Q04721 2471 aa12.76□□□□□ -0.37
VRK3-206ENST00000594090 PRR14LQ5THK1 2151 aa12.76□□□□□ -0.37
VRK3-206ENST00000594090 MAST4O15021 2626 aa12.76□□□□□ -0.37
VRK3-206ENST00000594090 NAV2Q8IVL1 2488 aa12.75□□□□□ -0.37
VRK3-206ENST00000594090 LRBAP50851 2863 aa12.75□□□□□ -0.37
VRK3-206ENST00000594090 A0A1W2PRG6 482 aa12.75□□□□□ -0.37
VRK3-206ENST00000594090 TCRBV5S2A0A599 114 aa12.75□□□□□ -0.37
VRK3-206ENST00000594090 DPRXA6NFQ7 191 aa12.75□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 38.4 ms