RNA–Protein interactions for RNA: ENST00000579558.5

SHMT1-206, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 2

Gene SHMT1, Length 1,077 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-206ENST00000579558 PGGHGQ32M88 737 aa20.9■□□□□ 0.94
SHMT1-206ENST00000579558 ANKRD16Q6P6B7 361 aa20.9■□□□□ 0.94
SHMT1-206ENST00000579558 PRSS57Q6UWY2 283 aa20.9■□□□□ 0.94
SHMT1-206ENST00000579558 PXKQ7Z7A4 578 aa20.9■□□□□ 0.94
SHMT1-206ENST00000579558 DEPDC4Q8N2C3 294 aa20.9■□□□□ 0.94
SHMT1-206ENST00000579558 ANKK1Q8NFD2 765 aa20.9■□□□□ 0.94
SHMT1-206ENST00000579558 LZICQ8WZA0 190 aa20.9■□□□□ 0.94
SHMT1-206ENST00000579558 BCL2L2Q92843 193 aaPredicted RBP20.9■□□□□ 0.94
SHMT1-206ENST00000579558 TXNDC15Q96J42 360 aa20.9■□□□□ 0.94
SHMT1-206ENST00000579558 DLL4Q9NR61 685 aa20.9■□□□□ 0.94
SHMT1-206ENST00000579558 ZNF701Q9NV72 531 aaPredicted RBP20.9■□□□□ 0.94
SHMT1-206ENST00000579558 RIMS3Q9UJD0 308 aa20.9■□□□□ 0.94
SHMT1-206ENST00000579558 A0A096LPE4 126 aa20.89■□□□□ 0.93
SHMT1-206ENST00000579558 A0A1W2PPZ6 126 aa20.89■□□□□ 0.93
SHMT1-206ENST00000579558 SLC35F4A4IF30 521 aa20.89■□□□□ 0.93
SHMT1-206ENST00000579558 UMPSP11172 480 aa20.89■□□□□ 0.93
SHMT1-206ENST00000579558 ARF1P84077 181 aaKnown RBP20.89■□□□□ 0.93
SHMT1-206ENST00000579558 PIN1Q13526 163 aaPredicted RBP20.89■□□□□ 0.93
SHMT1-206ENST00000579558 CEACAM16Q2WEN9 425 aa20.89■□□□□ 0.93
SHMT1-206ENST00000579558 NKAIN4Q8IVV8 208 aa20.89■□□□□ 0.93
SHMT1-206ENST00000579558 MAGEE2Q8TD90 523 aaPredicted RBP20.89■□□□□ 0.93
SHMT1-206ENST00000579558 ALG2Q9H553 416 aa20.89■□□□□ 0.93
SHMT1-206ENST00000579558 CRLF2Q9HC73 371 aa20.89■□□□□ 0.93
SHMT1-206ENST00000579558 FAIMQ9NVQ4 179 aa20.89■□□□□ 0.93
SHMT1-206ENST00000579558 ZNF229Q9UJW7 825 aa20.89■□□□□ 0.93
SHMT1-206ENST00000579558 USF3Q68DE3 2245 aa20.88■□□□□ 0.93
SHMT1-206ENST00000579558 ZNF726A6NNF4 738 aa20.88■□□□□ 0.93
SHMT1-206ENST00000579558 M0R3G1 203 aa20.88■□□□□ 0.93
SHMT1-206ENST00000579558 CXCR6O00574 342 aa20.88■□□□□ 0.93
SHMT1-206ENST00000579558 NDUFAB1O14561 156 aa20.88■□□□□ 0.93
SHMT1-206ENST00000579558 HIST1H2ABP04908 130 aa20.88■□□□□ 0.93
SHMT1-206ENST00000579558 PRDX6P30041 224 aa20.88■□□□□ 0.93
SHMT1-206ENST00000579558 RBM34P42696 430 aaKnown RBP20.88■□□□□ 0.93
SHMT1-206ENST00000579558 GSK3BP49841 420 aa20.88■□□□□ 0.93
SHMT1-206ENST00000579558 ATP5J2P56134 94 aa20.88■□□□□ 0.93
SHMT1-206ENST00000579558 RIPPLY3P57055 190 aa20.88■□□□□ 0.93
SHMT1-206ENST00000579558 NHLRC1Q6VVB1 395 aa20.88■□□□□ 0.93
SHMT1-206ENST00000579558 HIST3H2AQ7L7L0 130 aa20.88■□□□□ 0.93
SHMT1-206ENST00000579558 C20orf196Q8IYI0 205 aa20.88■□□□□ 0.93
SHMT1-206ENST00000579558 LRRC17Q8N6Y2 441 aa20.88■□□□□ 0.93
SHMT1-206ENST00000579558 TMEM255BQ8WV15 326 aa20.88■□□□□ 0.93
SHMT1-206ENST00000579558 HIST1H2ACQ93077 130 aa20.88■□□□□ 0.93
SHMT1-206ENST00000579558 GTPBP3Q969Y2 492 aaKnown RBP20.88■□□□□ 0.93
SHMT1-206ENST00000579558 Q96MF0 132 aa20.88■□□□□ 0.93
SHMT1-206ENST00000579558 NELFAQ9H3P2 528 aa20.88■□□□□ 0.93
SHMT1-206ENST00000579558 MEPEQ9NQ76 525 aaPredicted RBP20.88■□□□□ 0.93
SHMT1-206ENST00000579558 FLNAP21333 2647 aaKnown RBP20.88■□□□□ 0.93
SHMT1-206ENST00000579558 ZNF469Q96JG9 3925 aaPredicted RBP20.87■□□□□ 0.93
SHMT1-206ENST00000579558 ARPC4-TTLL3A0A0A6YYG9 625 aa20.87■□□□□ 0.93
SHMT1-206ENST00000579558 E7EQL1 145 aa20.87■□□□□ 0.93
SHMT1-206ENST00000579558 MT-ND1P03886 318 aa20.87■□□□□ 0.93
SHMT1-206ENST00000579558 FOSL1P15407 271 aa20.87■□□□□ 0.93
SHMT1-206ENST00000579558 UGT2B15P54855 530 aa20.87■□□□□ 0.93
SHMT1-206ENST00000579558 PSME3P61289 254 aa20.87■□□□□ 0.93
SHMT1-206ENST00000579558 TUBA1BP68363 451 aa20.87■□□□□ 0.93
SHMT1-206ENST00000579558 TUBA4AP68366 448 aa20.87■□□□□ 0.93
SHMT1-206ENST00000579558 ZP4Q12836 540 aa20.87■□□□□ 0.93
SHMT1-206ENST00000579558 CAMK2DQ13557 499 aa20.87■□□□□ 0.93
SHMT1-206ENST00000579558 PHYHD1Q5SRE7 291 aa20.87■□□□□ 0.93
SHMT1-206ENST00000579558 TUBA1AQ71U36 451 aa20.87■□□□□ 0.93
SHMT1-206ENST00000579558 SLC46A3Q7Z3Q1 461 aa20.87■□□□□ 0.93
SHMT1-206ENST00000579558 PFN4Q8NHR9 129 aa20.87■□□□□ 0.93
SHMT1-206ENST00000579558 TMEM239Q8WW34 195 aa20.87■□□□□ 0.93
SHMT1-206ENST00000579558 ZNF837Q96EG3 531 aaPredicted RBP20.87■□□□□ 0.93
SHMT1-206ENST00000579558 LRR1Q96L50 414 aa20.87■□□□□ 0.93
SHMT1-206ENST00000579558 B3GAT2Q9NPZ5 323 aa20.87■□□□□ 0.93
SHMT1-206ENST00000579558 TAS2R5Q9NYW4 299 aa20.87■□□□□ 0.93
SHMT1-206ENST00000579558 HEATR1Q9H583 2144 aaKnown RBP20.87■□□□□ 0.93
SHMT1-206ENST00000579558 ACANP16112 2415 aa20.86■□□□□ 0.93
SHMT1-206ENST00000579558 OVOL3O00110 214 aa20.86■□□□□ 0.93
SHMT1-206ENST00000579558 RNF13O43567 381 aa20.86■□□□□ 0.93
SHMT1-206ENST00000579558 ZNF682O95780 498 aa20.86■□□□□ 0.93
SHMT1-206ENST00000579558 ASAH2BP0C7U1 165 aa20.86■□□□□ 0.93
SHMT1-206ENST00000579558 THRBP10828 461 aa20.86■□□□□ 0.93
SHMT1-206ENST00000579558 HOXB1P14653 301 aaPredicted RBP20.86■□□□□ 0.93
SHMT1-206ENST00000579558 IFNGR1P15260 489 aa20.86■□□□□ 0.93
SHMT1-206ENST00000579558 PAX7P23759 505 aa20.86■□□□□ 0.93
SHMT1-206ENST00000579558 CDKN1AP38936 164 aa20.86■□□□□ 0.93
SHMT1-206ENST00000579558 B3GLCTQ6Y288 498 aa20.86■□□□□ 0.93
SHMT1-206ENST00000579558 NANOGNBQ7Z5D8 188 aa20.86■□□□□ 0.93
SHMT1-206ENST00000579558 VTCN1Q7Z7D3 282 aa20.86■□□□□ 0.93
SHMT1-206ENST00000579558 WDFY1Q8IWB7 410 aa20.86■□□□□ 0.93
SHMT1-206ENST00000579558 OR6N1Q8NGY5 312 aa20.86■□□□□ 0.93
SHMT1-206ENST00000579558 TRMT61AQ96FX7 289 aaKnown RBP20.86■□□□□ 0.93
SHMT1-206ENST00000579558 PRRC1Q96M27 445 aa20.86■□□□□ 0.93
SHMT1-206ENST00000579558 DHRS9Q9BPW9 319 aa20.86■□□□□ 0.93
SHMT1-206ENST00000579558 KCTD14Q9BQ13 255 aaPredicted RBP20.86■□□□□ 0.93
SHMT1-206ENST00000579558 TRAF4Q9BUZ4 470 aaPredicted RBP20.86■□□□□ 0.93
SHMT1-206ENST00000579558 ATP23Q9Y6H3 246 aa20.86■□□□□ 0.93
SHMT1-206ENST00000579558 VPS13CQ709C8 3753 aa20.85■□□□□ 0.93
SHMT1-206ENST00000579558 ZNF99A8MXY4 864 aaPredicted RBP20.85■□□□□ 0.93
SHMT1-206ENST00000579558 IFNA8P32881 189 aa20.85■□□□□ 0.93
SHMT1-206ENST00000579558 BIDP55957 195 aa20.85■□□□□ 0.93
SHMT1-206ENST00000579558 AGAP6Q5VW22 663 aa20.85■□□□□ 0.93
SHMT1-206ENST00000579558 SLC35D2Q76EJ3 337 aa20.85■□□□□ 0.93
SHMT1-206ENST00000579558 DTX2Q86UW9 622 aa20.85■□□□□ 0.93
SHMT1-206ENST00000579558 SGTBQ96EQ0 304 aa20.85■□□□□ 0.93
SHMT1-206ENST00000579558 C18orf12Q96KH6 178 aa20.85■□□□□ 0.93
SHMT1-206ENST00000579558 HS6ST2Q96MM7 605 aa20.85■□□□□ 0.93
SHMT1-206ENST00000579558 SLC38A2Q96QD8 506 aa20.85■□□□□ 0.93
Retrieved 100 of 20,778 RNA–protein pairs in 58.2 ms