RNA–Protein interactions for RNA: ENST00000572809.1

NUP88-205, Transcript of nucleoporin 88, humanhuman

TSL 3

Gene NUP88, Length 771 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-205ENST00000572809 ITGA5P08648 1049 aa6.52□□□□□ -1.37
NUP88-205ENST00000572809 VIMP08670 466 aaKnown RBP6.52□□□□□ -1.37
NUP88-205ENST00000572809 INHBBP09529 407 aa6.52□□□□□ -1.37
NUP88-205ENST00000572809 DANCRP0C864 163 aa6.52□□□□□ -1.37
NUP88-205ENST00000572809 PAX1P15863 534 aa6.52□□□□□ -1.37
NUP88-205ENST00000572809 PTAFRP25105 342 aa6.52□□□□□ -1.37
NUP88-205ENST00000572809 HTR2AP28223 471 aa6.52□□□□□ -1.37
NUP88-205ENST00000572809 GTF2E2P29084 291 aaKnown RBP6.52□□□□□ -1.37
NUP88-205ENST00000572809 MPGP29372 298 aa6.52□□□□□ -1.37
NUP88-205ENST00000572809 PTH2RP49190 550 aa6.52□□□□□ -1.37
NUP88-205ENST00000572809 ZNF83P51522 516 aa6.52□□□□□ -1.37
NUP88-205ENST00000572809 RGS8P57771 180 aaPredicted RBP6.52□□□□□ -1.37
NUP88-205ENST00000572809 MTPNP58546 118 aa6.52□□□□□ -1.37
NUP88-205ENST00000572809 NCALDP61601 193 aa6.52□□□□□ -1.37
NUP88-205ENST00000572809 DMTNQ08495 405 aa6.52□□□□□ -1.37
NUP88-205ENST00000572809 SELPLGQ14242 412 aa6.52□□□□□ -1.37
NUP88-205ENST00000572809 OR1Q1Q15612 314 aa6.52□□□□□ -1.37
NUP88-205ENST00000572809 DUSP7Q16829 419 aa6.52□□□□□ -1.37
NUP88-205ENST00000572809 CYP51A1Q16850 503 aa6.52□□□□□ -1.37
NUP88-205ENST00000572809 MMEL1Q495T6 779 aa6.52□□□□□ -1.37
NUP88-205ENST00000572809 ALG10BQ5I7T1 473 aa6.52□□□□□ -1.37
NUP88-205ENST00000572809 Q5PR19 223 aa6.52□□□□□ -1.37
NUP88-205ENST00000572809 FAM69AQ5T7M9 428 aa6.52□□□□□ -1.37
NUP88-205ENST00000572809 FAM91A1Q658Y4 838 aa6.52□□□□□ -1.37
NUP88-205ENST00000572809 NANOGP8Q6NSW7 305 aa6.52□□□□□ -1.37
NUP88-205ENST00000572809 KLHL17Q6TDP4 642 aa6.52□□□□□ -1.37
NUP88-205ENST00000572809 C5orf46Q6UWT4 87 aa6.52□□□□□ -1.37
NUP88-205ENST00000572809 C6orf89Q6UWU4 347 aa6.52□□□□□ -1.37
NUP88-205ENST00000572809 TMEM108Q6UXF1 575 aa6.52□□□□□ -1.37
NUP88-205ENST00000572809 ABHD12BQ7Z5M8 362 aaPredicted RBP6.52□□□□□ -1.37
NUP88-205ENST00000572809 YTHDF3Q7Z739 585 aaKnown RBP6.52□□□□□ -1.37
NUP88-205ENST00000572809 COMTD1Q86VU5 262 aa6.52□□□□□ -1.37
NUP88-205ENST00000572809 PTOV1Q86YD1 416 aa6.52□□□□□ -1.37
NUP88-205ENST00000572809 EPHX4Q8IUS5 362 aa6.52□□□□□ -1.37
NUP88-205ENST00000572809 SMYD1Q8NB12 490 aa6.52□□□□□ -1.37
NUP88-205ENST00000572809 C11orf65Q8NCR3 313 aa6.52□□□□□ -1.37
NUP88-205ENST00000572809 KBTBD8Q8NFY9 601 aa6.52□□□□□ -1.37
NUP88-205ENST00000572809 OR10A6Q8NH74 314 aa6.52□□□□□ -1.37
NUP88-205ENST00000572809 NEUROG1Q92886 237 aa6.52□□□□□ -1.37
NUP88-205ENST00000572809 SLC38A4Q969I6 547 aa6.52□□□□□ -1.37
NUP88-205ENST00000572809 TAAR8Q969N4 342 aa6.52□□□□□ -1.37
NUP88-205ENST00000572809 TRMT61AQ96FX7 289 aaKnown RBP6.52□□□□□ -1.37
NUP88-205ENST00000572809 RADILQ96JH8 1075 aa6.52□□□□□ -1.37
NUP88-205ENST00000572809 OXGR1Q96P68 337 aa6.52□□□□□ -1.37
NUP88-205ENST00000572809 WFDC6Q9BQY6 131 aa6.52□□□□□ -1.37
NUP88-205ENST00000572809 BDH2Q9BUT1 245 aa6.52□□□□□ -1.37
NUP88-205ENST00000572809 PTDSS2Q9BVG9 487 aa6.52□□□□□ -1.37
NUP88-205ENST00000572809 C1QTNF6Q9BXI9 259 aa6.52□□□□□ -1.37
NUP88-205ENST00000572809 SLCO5A1Q9H2Y9 848 aa6.52□□□□□ -1.37
NUP88-205ENST00000572809 KAT8Q9H7Z6 458 aaKnown RBP6.52□□□□□ -1.37
NUP88-205ENST00000572809 NANOGQ9H9S0 305 aa6.52□□□□□ -1.37
NUP88-205ENST00000572809 MRGBPQ9NV56 204 aa6.52□□□□□ -1.37
NUP88-205ENST00000572809 ZNF701Q9NV72 531 aaPredicted RBP6.52□□□□□ -1.37
NUP88-205ENST00000572809 ZNF446Q9NWS9 450 aa6.52□□□□□ -1.37
NUP88-205ENST00000572809 NPAP1Q9NZP6 1156 aa6.52□□□□□ -1.37
NUP88-205ENST00000572809 TESQ9UGI8 421 aaKnown RBP6.52□□□□□ -1.37
NUP88-205ENST00000572809 PRR14LQ5THK1 2151 aa6.52□□□□□ -1.37
NUP88-205ENST00000572809 MAP1AP78559 2803 aaPredicted RBP6.52□□□□□ -1.37
NUP88-205ENST00000572809 CELSR1Q9NYQ6 3014 aa6.51□□□□□ -1.37
NUP88-205ENST00000572809 RAI1Q7Z5J4 1906 aaPredicted RBP6.51□□□□□ -1.37
NUP88-205ENST00000572809 TRAV36DV7A0A075B6V5 113 aa6.51□□□□□ -1.37
NUP88-205ENST00000572809 A0A087WUJ7 227 aa6.51□□□□□ -1.37
NUP88-205ENST00000572809 A0A0B4J2E0 115 aa6.51□□□□□ -1.37
NUP88-205ENST00000572809 LOC100653049A0A140TA62 436 aa6.51□□□□□ -1.37
NUP88-205ENST00000572809 A0A1B0GX12 115 aa6.51□□□□□ -1.37
NUP88-205ENST00000572809 OR6C65A6NJZ3 312 aa6.51□□□□□ -1.37
NUP88-205ENST00000572809 SHISA9B4DS77 424 aa6.51□□□□□ -1.37
NUP88-205ENST00000572809 M0R1B8 84 aa6.51□□□□□ -1.37
NUP88-205ENST00000572809 OVOL3O00110 214 aa6.51□□□□□ -1.37
NUP88-205ENST00000572809 FBP2O00757 339 aa6.51□□□□□ -1.37
NUP88-205ENST00000572809 ABCD4O14678 606 aa6.51□□□□□ -1.37
NUP88-205ENST00000572809 AIM2O14862 343 aa6.51□□□□□ -1.37
NUP88-205ENST00000572809 KRT34O76011 436 aa6.51□□□□□ -1.37
NUP88-205ENST00000572809 NPPAP01160 153 aa6.51□□□□□ -1.37
NUP88-205ENST00000572809 OPN1SWP03999 348 aa6.51□□□□□ -1.37
NUP88-205ENST00000572809 SOD3P08294 240 aa6.51□□□□□ -1.37
NUP88-205ENST00000572809 ZNF43P17038 809 aa6.51□□□□□ -1.37
NUP88-205ENST00000572809 CDH2P19022 906 aaPredicted RBP6.51□□□□□ -1.37
NUP88-205ENST00000572809 CBLP22681 906 aa6.51□□□□□ -1.37
NUP88-205ENST00000572809 CD40P25942 277 aa6.51□□□□□ -1.37
NUP88-205ENST00000572809 SELENOPP49908 381 aa6.51□□□□□ -1.37
NUP88-205ENST00000572809 ATP5J2P56134 94 aa6.51□□□□□ -1.37
NUP88-205ENST00000572809 CLDN17P56750 224 aa6.51□□□□□ -1.37
NUP88-205ENST00000572809 PRPS1P60891 318 aa6.51□□□□□ -1.37
NUP88-205ENST00000572809 RPS4XP62701 263 aaKnown RBP6.51□□□□□ -1.37
NUP88-205ENST00000572809 SF3A3Q12874 501 aaKnown RBP eCLIP6.51□□□□□ -1.37
NUP88-205ENST00000572809 KLF10Q13118 480 aa6.51□□□□□ -1.37
NUP88-205ENST00000572809 IKZF1Q13422 519 aa6.51□□□□□ -1.37
NUP88-205ENST00000572809 C1DQ13901 141 aaKnown RBP6.51□□□□□ -1.37
NUP88-205ENST00000572809 MFSD13AQ14CX5 517 aa6.51□□□□□ -1.37
NUP88-205ENST00000572809 HSP90B2PQ58FF3 399 aa6.51□□□□□ -1.37
NUP88-205ENST00000572809 C1QTNF12Q5T7M4 302 aa6.51□□□□□ -1.37
NUP88-205ENST00000572809 INTS11Q5TA45 600 aaKnown RBP6.51□□□□□ -1.37
NUP88-205ENST00000572809 NIPAL3Q6P499 406 aa6.51□□□□□ -1.37
NUP88-205ENST00000572809 SLC22A25Q6T423 547 aa6.51□□□□□ -1.37
NUP88-205ENST00000572809 H1FNTQ75WM6 255 aaPredicted RBP6.51□□□□□ -1.37
NUP88-205ENST00000572809 PATL1Q86TB9 770 aaKnown RBP6.51□□□□□ -1.37
NUP88-205ENST00000572809 BIVMQ86UB2 503 aa6.51□□□□□ -1.37
NUP88-205ENST00000572809 RANBP3LQ86VV4 465 aaPredicted RBP6.51□□□□□ -1.37
NUP88-205ENST00000572809 SLC30A8Q8IWU4 369 aa6.51□□□□□ -1.37
Retrieved 100 of 20,778 RNA–protein pairs in 41.3 ms