RNA–Protein interactions for RNA: ENST00000569950.1

VPS35-211, Transcript of VPS35, retromer complex component, humanhuman

TSL 5

Gene VPS35, Length 1,096 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-211ENST00000569950 OR6K3Q8NGY3 331 aa8.22□□□□□ -1.09
VPS35-211ENST00000569950 OR4Q3Q8NH05 313 aa8.22□□□□□ -1.09
VPS35-211ENST00000569950 LILRB4Q8NHJ6 448 aa8.22□□□□□ -1.09
VPS35-211ENST00000569950 NRG4Q8WWG1 115 aa8.22□□□□□ -1.09
VPS35-211ENST00000569950 RND1Q92730 232 aa8.22□□□□□ -1.09
VPS35-211ENST00000569950 GTPBP3Q969Y2 492 aaKnown RBP8.22□□□□□ -1.09
VPS35-211ENST00000569950 TSPAN32Q96QS1 320 aa8.22□□□□□ -1.09
VPS35-211ENST00000569950 OR2M2Q96R28 347 aa8.22□□□□□ -1.09
VPS35-211ENST00000569950 DDOQ99489 341 aa8.22□□□□□ -1.09
VPS35-211ENST00000569950 NAA11Q9BSU3 229 aaPredicted RBP8.22□□□□□ -1.09
VPS35-211ENST00000569950 SFXN3Q9BWM7 321 aa8.22□□□□□ -1.09
VPS35-211ENST00000569950 OSBPL10Q9BXB5 764 aa8.22□□□□□ -1.09
VPS35-211ENST00000569950 ASPNQ9BXN1 380 aa8.22□□□□□ -1.09
VPS35-211ENST00000569950 MRPL13Q9BYD1 178 aaKnown RBP8.22□□□□□ -1.09
VPS35-211ENST00000569950 OR52D1Q9H346 318 aa8.22□□□□□ -1.09
VPS35-211ENST00000569950 NRIP3Q9NQ35 241 aa8.22□□□□□ -1.09
VPS35-211ENST00000569950 ASH1LQ9NR48 2969 aaKnown RBP8.22□□□□□ -1.09
VPS35-211ENST00000569950 PLSCR4Q9NRQ2 329 aa8.22□□□□□ -1.09
VPS35-211ENST00000569950 IL20Q9NYY1 176 aa8.22□□□□□ -1.09
VPS35-211ENST00000569950 KLHL9Q9P2J3 617 aa8.22□□□□□ -1.09
VPS35-211ENST00000569950 ZNF629Q9UEG4 869 aaPredicted RBP8.22□□□□□ -1.09
VPS35-211ENST00000569950 PRSS50Q9UI38 385 aa8.22□□□□□ -1.09
VPS35-211ENST00000569950 TMCC3Q9ULS5 477 aa8.22□□□□□ -1.09
VPS35-211ENST00000569950 MGAT4BQ9UQ53 548 aa8.22□□□□□ -1.09
VPS35-211ENST00000569950 ADAM18Q9Y3Q7 739 aa8.22□□□□□ -1.09
VPS35-211ENST00000569950 ABCA4P78363 2273 aa8.22□□□□□ -1.09
VPS35-211ENST00000569950 SAC3D1A6NKF1 404 aa8.21□□□□□ -1.1
VPS35-211ENST00000569950 HSPB2A8KAH6 182 aa8.21□□□□□ -1.1
VPS35-211ENST00000569950 C11orf98E9PRG8 122 aa8.21□□□□□ -1.1
VPS35-211ENST00000569950 BLOC1S5-TXNDC5H3BN57 136 aa8.21□□□□□ -1.1
VPS35-211ENST00000569950 SOCS2O14508 198 aa8.21□□□□□ -1.1
VPS35-211ENST00000569950 CASQ2O14958 399 aaPredicted RBP8.21□□□□□ -1.1
VPS35-211ENST00000569950 TXNDC12O95881 172 aa8.21□□□□□ -1.1
VPS35-211ENST00000569950 PLGP00747 810 aaPredicted RBP8.21□□□□□ -1.1
VPS35-211ENST00000569950 IL2RAP01589 272 aa8.21□□□□□ -1.1
VPS35-211ENST00000569950 ALPLP05186 524 aa8.21□□□□□ -1.1
VPS35-211ENST00000569950 SAGP10523 405 aaPredicted RBP8.21□□□□□ -1.1
VPS35-211ENST00000569950 CD8BP10966 210 aa8.21□□□□□ -1.1
VPS35-211ENST00000569950 IFNGR1P15260 489 aa8.21□□□□□ -1.1
VPS35-211ENST00000569950 CASP6P55212 293 aa8.21□□□□□ -1.1
VPS35-211ENST00000569950 HSPB2Q16082 182 aa8.21□□□□□ -1.1
VPS35-211ENST00000569950 ACKR1Q16570 336 aa8.21□□□□□ -1.1
VPS35-211ENST00000569950 HIST3H3Q16695 136 aa8.21□□□□□ -1.1
VPS35-211ENST00000569950 RFX4Q33E94 735 aa8.21□□□□□ -1.1
VPS35-211ENST00000569950 FBXL19-AS1Q494R0 122 aa8.21□□□□□ -1.1
VPS35-211ENST00000569950 ANKDD1AQ495B1 522 aa8.21□□□□□ -1.1
VPS35-211ENST00000569950 MESTQ5EB52 335 aa8.21□□□□□ -1.1
VPS35-211ENST00000569950 TSPO2Q5TGU0 170 aa8.21□□□□□ -1.1
VPS35-211ENST00000569950 TMEM225Q6GV28 225 aa8.21□□□□□ -1.1
VPS35-211ENST00000569950 TMEM211Q6ICI0 200 aa8.21□□□□□ -1.1
VPS35-211ENST00000569950 PPP4R4Q6NUP7 873 aa8.21□□□□□ -1.1
VPS35-211ENST00000569950 C22orf34Q6ZV56 151 aa8.21□□□□□ -1.1
VPS35-211ENST00000569950 ZNF771Q7L3S4 317 aaPredicted RBP8.21□□□□□ -1.1
VPS35-211ENST00000569950 CHMP1BQ7LBR1 199 aa8.21□□□□□ -1.1
VPS35-211ENST00000569950 GPAT4Q86UL3 456 aa8.21□□□□□ -1.1
VPS35-211ENST00000569950 GABRG1Q8N1C3 465 aa8.21□□□□□ -1.1
VPS35-211ENST00000569950 CLDN22Q8N7P3 220 aa8.21□□□□□ -1.1
VPS35-211ENST00000569950 ANKK1Q8NFD2 765 aa8.21□□□□□ -1.1
VPS35-211ENST00000569950 GNPDA2Q8TDQ7 276 aa8.21□□□□□ -1.1
VPS35-211ENST00000569950 ASB10Q8WXI3 467 aa8.21□□□□□ -1.1
VPS35-211ENST00000569950 ZHX1-C8orf76Q96EF9 292 aa8.21□□□□□ -1.1
VPS35-211ENST00000569950 ZNF837Q96EG3 531 aaPredicted RBP8.21□□□□□ -1.1
VPS35-211ENST00000569950 SAMD8Q96LT4 415 aa8.21□□□□□ -1.1
VPS35-211ENST00000569950 CIB1Q99828 191 aa8.21□□□□□ -1.1
VPS35-211ENST00000569950 BDH2Q9BUT1 245 aa8.21□□□□□ -1.1
VPS35-211ENST00000569950 EMC6Q9BV81 110 aa8.21□□□□□ -1.1
VPS35-211ENST00000569950 KATNB1Q9BVA0 655 aa8.21□□□□□ -1.1
VPS35-211ENST00000569950 UCK2Q9BZX2 261 aa8.21□□□□□ -1.1
VPS35-211ENST00000569950 OPN3Q9H1Y3 402 aaPredicted RBP8.21□□□□□ -1.1
VPS35-211ENST00000569950 NPDC1Q9NQX5 325 aaPredicted RBP8.21□□□□□ -1.1
VPS35-211ENST00000569950 GLRX2Q9NS18 164 aa8.21□□□□□ -1.1
VPS35-211ENST00000569950 STX18Q9P2W9 335 aaKnown RBP8.21□□□□□ -1.1
VPS35-211ENST00000569950 RCE1Q9Y256 329 aa8.21□□□□□ -1.1
VPS35-211ENST00000569950 NOX1Q9Y5S8 564 aa8.21□□□□□ -1.1
VPS35-211ENST00000569950 CDH10Q9Y6N8 788 aa8.21□□□□□ -1.1
VPS35-211ENST00000569950 LRBAP50851 2863 aa8.21□□□□□ -1.1
VPS35-211ENST00000569950 ROS1P08922 2347 aa8.2□□□□□ -1.1
VPS35-211ENST00000569950 PLCE1Q9P212 2302 aa8.2□□□□□ -1.1
VPS35-211ENST00000569950 NBPF19A0A087WUL8 3843 aa8.2□□□□□ -1.1
VPS35-211ENST00000569950 ITPR2Q14571 2701 aa8.2□□□□□ -1.1
VPS35-211ENST00000569950 IGKV1D-43A0A0B4J1Z2 117 aa8.2□□□□□ -1.1
VPS35-211ENST00000569950 SLC35F4A4IF30 521 aa8.2□□□□□ -1.1
VPS35-211ENST00000569950 NKX2-6A6NCS4 301 aa8.2□□□□□ -1.1
VPS35-211ENST00000569950 A8MXE2 369 aa8.2□□□□□ -1.1
VPS35-211ENST00000569950 G3V2T6 193 aa8.2□□□□□ -1.1
VPS35-211ENST00000569950 C19orf84I3L1E1 186 aa8.2□□□□□ -1.1
VPS35-211ENST00000569950 GNGT2O14610 69 aa8.2□□□□□ -1.1
VPS35-211ENST00000569950 EI24O14681 340 aa8.2□□□□□ -1.1
VPS35-211ENST00000569950 E2F6O75461 281 aa8.2□□□□□ -1.1
VPS35-211ENST00000569950 UPK3AO75631 287 aa8.2□□□□□ -1.1
VPS35-211ENST00000569950 NDUFB2O95178 105 aa8.2□□□□□ -1.1
VPS35-211ENST00000569950 SOX14O95416 240 aa8.2□□□□□ -1.1
VPS35-211ENST00000569950 CD14P08571 375 aa8.2□□□□□ -1.1
VPS35-211ENST00000569950 PGA4P0DJD7 388 aa8.2□□□□□ -1.1
VPS35-211ENST00000569950 PGA3P0DJD8 388 aa8.2□□□□□ -1.1
VPS35-211ENST00000569950 ANXA8P13928 327 aa8.2□□□□□ -1.1
VPS35-211ENST00000569950 IGFBP2P18065 325 aa8.2□□□□□ -1.1
VPS35-211ENST00000569950 AGAP20933 346 aa8.2□□□□□ -1.1
VPS35-211ENST00000569950 BMP5P22003 454 aa8.2□□□□□ -1.1
VPS35-211ENST00000569950 PEX2P28328 305 aa8.2□□□□□ -1.1
Retrieved 100 of 20,778 RNA–protein pairs in 29.9 ms