RNA–Protein interactions for RNA: ENST00000569406.5

CLK3-226, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 3,591 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-226ENST00000569406 GOSR1O95249 250 aa9.96□□□□□ -0.82
CLK3-226ENST00000569406 CNOT4O95628 575 aaKnown RBP9.96□□□□□ -0.82
CLK3-226ENST00000569406 CPEP16870 476 aa9.96□□□□□ -0.82
CLK3-226ENST00000569406 TNFRSF1BP20333 461 aa9.96□□□□□ -0.82
CLK3-226ENST00000569406 CD80P33681 288 aa9.96□□□□□ -0.82
CLK3-226ENST00000569406 SPIBQ01892 262 aa9.96□□□□□ -0.82
CLK3-226ENST00000569406 SLC9A3R2Q15599 337 aa9.96□□□□□ -0.82
CLK3-226ENST00000569406 FAAP20Q6NZ36 180 aa9.96□□□□□ -0.82
CLK3-226ENST00000569406 NKAPQ8N5F7 415 aaKnown RBP9.96□□□□□ -0.82
CLK3-226ENST00000569406 POGLUT1Q8NBL1 392 aa9.96□□□□□ -0.82
CLK3-226ENST00000569406 OR14K1Q8NGZ2 314 aa9.96□□□□□ -0.82
CLK3-226ENST00000569406 APOLD1Q96LR9 279 aa9.96□□□□□ -0.82
CLK3-226ENST00000569406 EBPLQ9BY08 206 aa9.96□□□□□ -0.82
CLK3-226ENST00000569406 SLC25A19Q9HC21 320 aa9.96□□□□□ -0.82
CLK3-226ENST00000569406 SPG21Q9NZD8 308 aa9.96□□□□□ -0.82
CLK3-226ENST00000569406 CALML5Q9NZT1 146 aa9.96□□□□□ -0.82
CLK3-226ENST00000569406 A4GNTQ9UNA3 340 aa9.96□□□□□ -0.82
CLK3-226ENST00000569406 PLXNA2O75051 1894 aa9.96□□□□□ -0.82
CLK3-226ENST00000569406 TBC1D3KA0A087X1G2 549 aa9.95□□□□□ -0.82
CLK3-226ENST00000569406 LOC102724200A0A096LPH7 203 aaPredicted RBP9.95□□□□□ -0.82
CLK3-226ENST00000569406 SLC7A9P82251 487 aa9.95□□□□□ -0.82
CLK3-226ENST00000569406 B4GALNT1Q00973 533 aa9.95□□□□□ -0.82
CLK3-226ENST00000569406 C17orf67Q0P5P2 114 aa9.95□□□□□ -0.82
CLK3-226ENST00000569406 RFTN2Q52LD8 501 aaPredicted RBP9.95□□□□□ -0.82
CLK3-226ENST00000569406 GGNBP1Q5YKI7 109 aa9.95□□□□□ -0.82
CLK3-226ENST00000569406 ABLIM2Q6H8Q1 611 aa9.95□□□□□ -0.82
CLK3-226ENST00000569406 GLDNQ6ZMI3 551 aaPredicted RBP9.95□□□□□ -0.82
CLK3-226ENST00000569406 ESPNLQ6ZVH7 1005 aa9.95□□□□□ -0.82
CLK3-226ENST00000569406 DEFB128Q7Z7B8 93 aa9.95□□□□□ -0.82
CLK3-226ENST00000569406 MSRB3Q8IXL7 192 aa9.95□□□□□ -0.82
CLK3-226ENST00000569406 GCNT2Q8N0V5 402 aa9.95□□□□□ -0.82
CLK3-226ENST00000569406 C12orf76Q8N812 135 aaPredicted RBP9.95□□□□□ -0.82
CLK3-226ENST00000569406 OR1L6Q8NGR2 347 aa9.95□□□□□ -0.82
CLK3-226ENST00000569406 OTUB2Q96DC9 234 aa9.95□□□□□ -0.82
CLK3-226ENST00000569406 PANX1Q96RD7 426 aa9.95□□□□□ -0.82
CLK3-226ENST00000569406 CDC6Q99741 560 aa9.95□□□□□ -0.82
CLK3-226ENST00000569406 RHOFQ9HBH0 211 aa9.95□□□□□ -0.82
CLK3-226ENST00000569406 PPT2Q9UMR5 302 aa9.95□□□□□ -0.82
CLK3-226ENST00000569406 COLEC10Q9Y6Z7 277 aa9.95□□□□□ -0.82
CLK3-226ENST00000569406 MYO7AQ13402 2215 aa9.95□□□□□ -0.82
CLK3-226ENST00000569406 FAM183AA6NL82 134 aa9.95□□□□□ -0.82
CLK3-226ENST00000569406 EIF4E2O60573 245 aaKnown RBP9.95□□□□□ -0.82
CLK3-226ENST00000569406 RPA2P15927 270 aa9.95□□□□□ -0.82
CLK3-226ENST00000569406 RBMS1P29558 406 aaKnown RBP9.95□□□□□ -0.82
CLK3-226ENST00000569406 SHC2P98077 582 aa9.95□□□□□ -0.82
CLK3-226ENST00000569406 ARMC12Q5T9G4 340 aa9.95□□□□□ -0.82
CLK3-226ENST00000569406 WDR73Q6P4I2 378 aa9.95□□□□□ -0.82
CLK3-226ENST00000569406 OAFQ86UD1 273 aa9.95□□□□□ -0.82
CLK3-226ENST00000569406 PARGQ86W56 976 aa9.95□□□□□ -0.82
CLK3-226ENST00000569406 FAM129CQ86XR2 697 aa9.95□□□□□ -0.82
CLK3-226ENST00000569406 ARL14EPQ8N8R7 260 aaPredicted RBP9.95□□□□□ -0.82
CLK3-226ENST00000569406 HSPA12BQ96MM6 686 aa9.95□□□□□ -0.82
CLK3-226ENST00000569406 SULT4A1Q9BR01 284 aa9.95□□□□□ -0.82
CLK3-226ENST00000569406 ZNF2Q9BSG1 426 aaPredicted RBP9.95□□□□□ -0.82
CLK3-226ENST00000569406 TMEM45AQ9NWC5 275 aa9.95□□□□□ -0.82
CLK3-226ENST00000569406 ZNF346Q9UL40 294 aaKnown RBP9.95□□□□□ -0.82
CLK3-226ENST00000569406 LOC100509620A0A075B734 347 aa9.95□□□□□ -0.82
CLK3-226ENST00000569406 CCDC187A0A096LP49 1063 aa9.95□□□□□ -0.82
CLK3-226ENST00000569406 SOX14O95416 240 aa9.95□□□□□ -0.82
CLK3-226ENST00000569406 SELEP16581 610 aa9.95□□□□□ -0.82
CLK3-226ENST00000569406 CELP19835 753 aa9.95□□□□□ -0.82
CLK3-226ENST00000569406 FGF8P55075 233 aaPredicted RBP9.95□□□□□ -0.82
CLK3-226ENST00000569406 DEFB103AP81534 67 aa9.95□□□□□ -0.82
CLK3-226ENST00000569406 PCBP2Q15366 365 aaKnown RBP eCLIP9.95□□□□□ -0.82
CLK3-226ENST00000569406 RTL6Q6ICC9 239 aa9.95□□□□□ -0.82
CLK3-226ENST00000569406 ZNF774Q6NX45 483 aa9.95□□□□□ -0.82
CLK3-226ENST00000569406 DOK6Q6PKX4 331 aa9.95□□□□□ -0.82
CLK3-226ENST00000569406 CXXC5Q7LFL8 322 aaKnown RBP9.95□□□□□ -0.82
CLK3-226ENST00000569406 SLC16A14Q7RTX9 510 aa9.95□□□□□ -0.82
CLK3-226ENST00000569406 BAP18Q8IXM2 172 aa9.95□□□□□ -0.82
CLK3-226ENST00000569406 THAP4Q8WY91 577 aa9.95□□□□□ -0.82
CLK3-226ENST00000569406 AUNIPQ9H7T9 357 aa9.95□□□□□ -0.82
CLK3-226ENST00000569406 LPAR2Q9HBW0 351 aa9.95□□□□□ -0.82
CLK3-226ENST00000569406 ARL15Q9NXU5 204 aa9.95□□□□□ -0.82
CLK3-226ENST00000569406 RASD1Q9Y272 281 aa9.95□□□□□ -0.82
CLK3-226ENST00000569406 EXOGQ9Y2C4 368 aaKnown RBP9.95□□□□□ -0.82
CLK3-226ENST00000569406 MTCL1Q9Y4B5 1905 aaKnown RBP9.94□□□□□ -0.82
CLK3-226ENST00000569406 FAM220BPB1ANY3 271 aa9.94□□□□□ -0.82
CLK3-226ENST00000569406 OR2J2O76002 312 aa9.94□□□□□ -0.82
CLK3-226ENST00000569406 PAX1P15863 534 aa9.94□□□□□ -0.82
CLK3-226ENST00000569406 S1PR1P21453 382 aa9.94□□□□□ -0.82
CLK3-226ENST00000569406 NAA10P41227 235 aaPredicted RBP9.94□□□□□ -0.82
CLK3-226ENST00000569406 PTGER3P43115 390 aa9.94□□□□□ -0.82
CLK3-226ENST00000569406 TFPI2P48307 235 aa9.94□□□□□ -0.82
CLK3-226ENST00000569406 SMAD3P84022 425 aaKnown RBP9.94□□□□□ -0.82
CLK3-226ENST00000569406 HGFACQ04756 655 aa9.94□□□□□ -0.82
CLK3-226ENST00000569406 ZNF234Q14588 700 aa9.94□□□□□ -0.82
CLK3-226ENST00000569406 ARSIQ5FYB1 569 aa9.94□□□□□ -0.82
CLK3-226ENST00000569406 ASTLQ6HA08 431 aaPredicted RBP9.94□□□□□ -0.82
CLK3-226ENST00000569406 RFLNAQ6ZTI6 216 aa9.94□□□□□ -0.82
CLK3-226ENST00000569406 TCEAL8Q8IYN2 117 aa9.94□□□□□ -0.82
CLK3-226ENST00000569406 HSD17B11Q8NBQ5 300 aa9.94□□□□□ -0.82
CLK3-226ENST00000569406 SMAP2Q8WU79 429 aaPredicted RBP9.94□□□□□ -0.82
CLK3-226ENST00000569406 WDR92Q96MX6 357 aa9.94□□□□□ -0.82
CLK3-226ENST00000569406 RNF2Q99496 336 aa9.94□□□□□ -0.82
CLK3-226ENST00000569406 NKX3-1Q99801 234 aaPredicted RBP9.94□□□□□ -0.82
CLK3-226ENST00000569406 MFRPQ9BY79 579 aa9.94□□□□□ -0.82
CLK3-226ENST00000569406 UBQLN3Q9H347 655 aa9.94□□□□□ -0.82
CLK3-226ENST00000569406 MIEF1Q9NQG6 463 aa9.94□□□□□ -0.82
CLK3-226ENST00000569406 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP9.94□□□□□ -0.824e-6■■■□□ 18.6
Retrieved 100 of 20,778 RNA–protein pairs in 57.3 ms