RNA–Protein interactions for RNA: ENST00000569030.5

CLN3-237, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,109 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-237ENST00000569030 ZNF426Q9BUY5 554 aa16.04■□□□□ 0.16
CLN3-237ENST00000569030 GRIP2Q9C0E4 1043 aa16.04■□□□□ 0.16
CLN3-237ENST00000569030 CRLF2Q9HC73 371 aa16.04■□□□□ 0.16
CLN3-237ENST00000569030 OBP2BQ9NPH6 170 aa16.04■□□□□ 0.16
CLN3-237ENST00000569030 CMTM6Q9NX76 183 aa16.04■□□□□ 0.16
CLN3-237ENST00000569030 NOX1Q9Y5S8 564 aa16.04■□□□□ 0.16
CLN3-237ENST00000569030 ATP23Q9Y6H3 246 aa16.04■□□□□ 0.16
CLN3-237ENST00000569030 FN1P02751 2386 aaKnown RBP16.04■□□□□ 0.16
CLN3-237ENST00000569030 ARPC4-TTLL3A0A0A6YYG9 625 aa16.03■□□□□ 0.16
CLN3-237ENST00000569030 IGHV1-18A0A0C4DH31 117 aa16.03■□□□□ 0.16
CLN3-237ENST00000569030 SLC35F4A4IF30 521 aa16.03■□□□□ 0.16
CLN3-237ENST00000569030 FAM220BPB1ANY3 271 aa16.03■□□□□ 0.16
CLN3-237ENST00000569030 M0R3G1 203 aa16.03■□□□□ 0.16
CLN3-237ENST00000569030 KPNA4O00629 521 aaPredicted RBP16.03■□□□□ 0.16
CLN3-237ENST00000569030 CH25HO95992 272 aa16.03■□□□□ 0.16
CLN3-237ENST00000569030 MT-ATP6P00846 226 aa16.03■□□□□ 0.16
CLN3-237ENST00000569030 AHCYP23526 432 aa16.03■□□□□ 0.16
CLN3-237ENST00000569030 KDELR2P33947 212 aa16.03■□□□□ 0.16
CLN3-237ENST00000569030 OR1E2P47887 323 aa16.03■□□□□ 0.16
CLN3-237ENST00000569030 CEACAM16Q2WEN9 425 aa16.03■□□□□ 0.16
CLN3-237ENST00000569030 CYBRD1Q53TN4 286 aa16.03■□□□□ 0.16
CLN3-237ENST00000569030 AGAP6Q5VW22 663 aa16.03■□□□□ 0.16
CLN3-237ENST00000569030 C11orf71Q6IPW1 123 aa16.03■□□□□ 0.16
CLN3-237ENST00000569030 PXKQ7Z7A4 578 aa16.03■□□□□ 0.16
CLN3-237ENST00000569030 C20orf196Q8IYI0 205 aa16.03■□□□□ 0.16
CLN3-237ENST00000569030 DEPDC4Q8N2C3 294 aa16.03■□□□□ 0.16
CLN3-237ENST00000569030 PIK3C3Q8NEB9 887 aa16.03■□□□□ 0.16
CLN3-237ENST00000569030 ANKK1Q8NFD2 765 aa16.03■□□□□ 0.16
CLN3-237ENST00000569030 OR2T12Q8NG77 320 aa16.03■□□□□ 0.16
CLN3-237ENST00000569030 OR5J2Q8NH18 312 aa16.03■□□□□ 0.16
CLN3-237ENST00000569030 MAGEE2Q8TD90 523 aaPredicted RBP16.03■□□□□ 0.16
CLN3-237ENST00000569030 MPP4Q96JB8 637 aa16.03■□□□□ 0.16
CLN3-237ENST00000569030 ALG2Q9H553 416 aa16.03■□□□□ 0.16
CLN3-237ENST00000569030 FAIMQ9NVQ4 179 aa16.03■□□□□ 0.16
CLN3-237ENST00000569030 TAS2R5Q9NYW4 299 aa16.03■□□□□ 0.16
CLN3-237ENST00000569030 GDF2Q9UK05 429 aaPredicted RBP16.03■□□□□ 0.16
CLN3-237ENST00000569030 BAG5Q9UL15 447 aa16.03■□□□□ 0.16
CLN3-237ENST00000569030 MOKQ9UQ07 419 aa16.03■□□□□ 0.16
CLN3-237ENST00000569030 ZNF503-AS2A6NEH8 195 aa16.02■□□□□ 0.16
CLN3-237ENST00000569030 C11orf98E9PRG8 122 aa16.02■□□□□ 0.16
CLN3-237ENST00000569030 ATP6V1G2-DDX39BF2Z307 99 aa16.02■□□□□ 0.16
CLN3-237ENST00000569030 AKAP8O43823 692 aaKnown RBP16.02■□□□□ 0.16
CLN3-237ENST00000569030 CCDC22O60826 627 aa16.02■□□□□ 0.16
CLN3-237ENST00000569030 SERPINI2O75830 405 aa16.02■□□□□ 0.16
CLN3-237ENST00000569030 LY6G6DO95868 133 aa16.02■□□□□ 0.16
CLN3-237ENST00000569030 IGHV4-39P01824 125 aa16.02■□□□□ 0.16
CLN3-237ENST00000569030 ADORA3P0DMS8 318 aa16.02■□□□□ 0.16
CLN3-237ENST00000569030 FABP6P51161 128 aa16.02■□□□□ 0.16
CLN3-237ENST00000569030 SEC24CP53992 1094 aa16.02■□□□□ 0.16
CLN3-237ENST00000569030 SH3BGRP55822 239 aaPredicted RBP16.02■□□□□ 0.16
CLN3-237ENST00000569030 UBE2NP61088 152 aaKnown RBP16.02■□□□□ 0.16
CLN3-237ENST00000569030 PIN1Q13526 163 aaPredicted RBP16.02■□□□□ 0.16
CLN3-237ENST00000569030 CAMK2DQ13557 499 aa16.02■□□□□ 0.16
CLN3-237ENST00000569030 CLEC9AQ6UXN8 241 aa16.02■□□□□ 0.16
CLN3-237ENST00000569030 SLC15A3Q8IY34 581 aa16.02■□□□□ 0.16
CLN3-237ENST00000569030 MICU2Q8IYU8 434 aa16.02■□□□□ 0.16
CLN3-237ENST00000569030 MUC15Q8N387 334 aa16.02■□□□□ 0.16
CLN3-237ENST00000569030 SLC38A2Q96QD8 506 aa16.02■□□□□ 0.16
CLN3-237ENST00000569030 ELAC2Q9BQ52 826 aaKnown RBP16.02■□□□□ 0.16
CLN3-237ENST00000569030 FKRPQ9H9S5 495 aa16.02■□□□□ 0.16
CLN3-237ENST00000569030 MEPEQ9NQ76 525 aaPredicted RBP16.02■□□□□ 0.16
CLN3-237ENST00000569030 ELOVL7A1L3X0 281 aa16.01■□□□□ 0.15
CLN3-237ENST00000569030 SEC14L2O76054 403 aa16.01■□□□□ 0.15
CLN3-237ENST00000569030 HOXB1P14653 301 aaPredicted RBP16.01■□□□□ 0.15
CLN3-237ENST00000569030 ACVR1BP36896 505 aa16.01■□□□□ 0.15
CLN3-237ENST00000569030 TNK1Q13470 666 aa16.01■□□□□ 0.15
CLN3-237ENST00000569030 CLEC12BQ2HXU8 276 aa16.01■□□□□ 0.15
CLN3-237ENST00000569030 LRRC23Q53EV4 343 aaPredicted RBP16.01■□□□□ 0.15
CLN3-237ENST00000569030 DEF8Q6ZN54 512 aa16.01■□□□□ 0.15
CLN3-237ENST00000569030 NKAIN4Q8IVV8 208 aa16.01■□□□□ 0.15
CLN3-237ENST00000569030 FBXL14Q8N1E6 418 aa16.01■□□□□ 0.15
CLN3-237ENST00000569030 LRR1Q96L50 414 aa16.01■□□□□ 0.15
CLN3-237ENST00000569030 SLC19A3Q9BZV2 496 aa16.01■□□□□ 0.15
CLN3-237ENST00000569030 SEC61A2Q9H9S3 476 aa16.01■□□□□ 0.15
CLN3-237ENST00000569030 NANSQ9NR45 359 aa16.01■□□□□ 0.15
CLN3-237ENST00000569030 CBLN4Q9NTU7 201 aa16.01■□□□□ 0.15
CLN3-237ENST00000569030 CRNNQ9UBG3 495 aaPredicted RBP16.01■□□□□ 0.15
CLN3-237ENST00000569030 RIMS3Q9UJD0 308 aa16.01■□□□□ 0.15
CLN3-237ENST00000569030 ABCA1O95477 2261 aa16■□□□□ 0.15
CLN3-237ENST00000569030 ZNF726A6NNF4 738 aa16■□□□□ 0.15
CLN3-237ENST00000569030 ZNF99A8MXY4 864 aaPredicted RBP16■□□□□ 0.15
CLN3-237ENST00000569030 OR6A2O95222 327 aa16■□□□□ 0.15
CLN3-237ENST00000569030 IFNA14P01570 189 aa16■□□□□ 0.15
CLN3-237ENST00000569030 ASAH2BP0C7U1 165 aa16■□□□□ 0.15
CLN3-237ENST00000569030 IFNGR1P15260 489 aa16■□□□□ 0.15
CLN3-237ENST00000569030 HOXB4P17483 251 aaPredicted RBP16■□□□□ 0.15
CLN3-237ENST00000569030 UGT2B15P54855 530 aa16■□□□□ 0.15
CLN3-237ENST00000569030 TAS2R41P59536 307 aa16■□□□□ 0.15
CLN3-237ENST00000569030 LIPEQ05469 1076 aa16■□□□□ 0.15
CLN3-237ENST00000569030 ZP4Q12836 540 aa16■□□□□ 0.15
CLN3-237ENST00000569030 ZNF544Q6NX49 715 aa16■□□□□ 0.15
CLN3-237ENST00000569030 C8orf82Q6P1X6 216 aaPredicted RBP16■□□□□ 0.15
CLN3-237ENST00000569030 SLC46A3Q7Z3Q1 461 aa16■□□□□ 0.15
CLN3-237ENST00000569030 SPATA21Q7Z572 469 aa16■□□□□ 0.15
CLN3-237ENST00000569030 MYPOPQ86VE0 399 aaPredicted RBP16■□□□□ 0.15
CLN3-237ENST00000569030 PFN4Q8NHR9 129 aa16■□□□□ 0.15
CLN3-237ENST00000569030 TMEM255BQ8WV15 326 aa16■□□□□ 0.15
CLN3-237ENST00000569030 TPD52L3Q96J77 140 aa16■□□□□ 0.15
CLN3-237ENST00000569030 CACNG6Q9BXT2 260 aa16■□□□□ 0.15
CLN3-237ENST00000569030 RTTNQ86VV8 2226 aa16■□□□□ 0.15
Retrieved 100 of 20,778 RNA–protein pairs in 24.2 ms