RNA–Protein interactions for RNA: ENST00000568784.6

VPS35-210, Transcript of VPS35, retromer complex component, humanhuman

TSL 1 (best)

Gene VPS35, Length 4,017 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-210ENST00000568784 SLC22A7Q9Y694 548 aa13.26□□□□□ -0.29
VPS35-210ENST00000568784 C5AR1P21730 350 aa13.25□□□□□ -0.29
VPS35-210ENST00000568784 DIO1P49895 249 aa13.25□□□□□ -0.29
VPS35-210ENST00000568784 PPP1CAP62136 330 aa13.25□□□□□ -0.29
VPS35-210ENST00000568784 GK2Q14410 553 aaPredicted RBP13.25□□□□□ -0.29
VPS35-210ENST00000568784 ARHGAP40Q5TG30 622 aa13.25□□□□□ -0.29
VPS35-210ENST00000568784 GLDNQ6ZMI3 551 aaPredicted RBP13.25□□□□□ -0.29
VPS35-210ENST00000568784 KRT77Q7Z794 578 aa13.25□□□□□ -0.29
VPS35-210ENST00000568784 TAF8Q7Z7C8 310 aa13.25□□□□□ -0.29
VPS35-210ENST00000568784 HGDQ93099 445 aa13.25□□□□□ -0.29
VPS35-210ENST00000568784 PTDSS2Q9BVG9 487 aa13.25□□□□□ -0.29
VPS35-210ENST00000568784 THAP10Q9P2Z0 257 aaPredicted RBP13.25□□□□□ -0.29
VPS35-210ENST00000568784 A0A0B4J2E0 115 aa13.25□□□□□ -0.29
VPS35-210ENST00000568784 A0A1B0GX12 115 aa13.25□□□□□ -0.29
VPS35-210ENST00000568784 AMY2AP04746 511 aa13.25□□□□□ -0.29
VPS35-210ENST00000568784 SPARCP09486 303 aa13.25□□□□□ -0.29
VPS35-210ENST00000568784 ACHEP22303 614 aa13.25□□□□□ -0.29
VPS35-210ENST00000568784 GRM7Q14831 915 aa13.25□□□□□ -0.29
VPS35-210ENST00000568784 ZNF425Q6IV72 752 aa13.25□□□□□ -0.29
VPS35-210ENST00000568784 DGAT2L6Q6ZPD8 337 aa13.25□□□□□ -0.29
VPS35-210ENST00000568784 USP53Q70EK8 1073 aa13.25□□□□□ -0.29
VPS35-210ENST00000568784 KCTD9Q7L273 389 aa13.25□□□□□ -0.29
VPS35-210ENST00000568784 BEST3Q8N1M1 668 aa13.25□□□□□ -0.29
VPS35-210ENST00000568784 OR4C3Q8NH37 302 aa13.25□□□□□ -0.29
VPS35-210ENST00000568784 FBXW5Q969U6 566 aa13.25□□□□□ -0.29
VPS35-210ENST00000568784 SYT4Q9H2B2 425 aa13.25□□□□□ -0.29
VPS35-210ENST00000568784 RANBP2P49792 3224 aaKnown RBP13.25□□□□□ -0.29
VPS35-210ENST00000568784 A0A1B0GUH1 482 aa13.25□□□□□ -0.29
VPS35-210ENST00000568784 NAP1L6A6NFF2 107 aa13.25□□□□□ -0.29
VPS35-210ENST00000568784 J3QRE1 110 aa13.25□□□□□ -0.29
VPS35-210ENST00000568784 TIMP1P01033 207 aa13.25□□□□□ -0.29
VPS35-210ENST00000568784 IGF2P01344 180 aa13.25□□□□□ -0.29
VPS35-210ENST00000568784 HNRNPA1P09651 372 aaKnown RBP eCLIP13.25□□□□□ -0.29
VPS35-210ENST00000568784 ALG10Q5BKT4 473 aa13.25□□□□□ -0.29
VPS35-210ENST00000568784 SLC35F3Q8IY50 421 aa13.25□□□□□ -0.29
VPS35-210ENST00000568784 OR51A4Q8NGJ6 313 aa13.25□□□□□ -0.29
VPS35-210ENST00000568784 HERVK_113Q902F9 699 aa13.25□□□□□ -0.29
VPS35-210ENST00000568784 VWCEQ96DN2 955 aa13.25□□□□□ -0.29
VPS35-210ENST00000568784 ASB16Q96NS5 453 aa13.25□□□□□ -0.29
VPS35-210ENST00000568784 CMKLR1Q99788 373 aa13.25□□□□□ -0.29
VPS35-210ENST00000568784 SLC6A5Q9Y345 797 aa13.25□□□□□ -0.29
VPS35-210ENST00000568784 CDC14CA4D256 554 aa13.24□□□□□ -0.29
VPS35-210ENST00000568784 MCRIP1C9JLW8 97 aa13.24□□□□□ -0.29
VPS35-210ENST00000568784 EIF1AYO14602 144 aaKnown RBP13.24□□□□□ -0.29
VPS35-210ENST00000568784 XKRYO14609 159 aa13.24□□□□□ -0.29
VPS35-210ENST00000568784 BRINP1O60477 761 aa13.24□□□□□ -0.29
VPS35-210ENST00000568784 SC5DO75845 299 aa13.24□□□□□ -0.29
VPS35-210ENST00000568784 HLXQ14774 488 aaPredicted RBP13.24□□□□□ -0.29
VPS35-210ENST00000568784 Q499Y3 187 aa13.24□□□□□ -0.29
VPS35-210ENST00000568784 OR10K2Q6IF99 312 aa13.24□□□□□ -0.29
VPS35-210ENST00000568784 FAM199XQ6PEV8 388 aaPredicted RBP13.24□□□□□ -0.29
VPS35-210ENST00000568784 ZNF550Q7Z398 422 aa13.24□□□□□ -0.29
VPS35-210ENST00000568784 CD163Q86VB7 1156 aa13.24□□□□□ -0.29
VPS35-210ENST00000568784 TRPV4Q9HBA0 871 aa13.24□□□□□ -0.29
VPS35-210ENST00000568784 TDRD6O60522 2096 aaKnown RBP13.24□□□□□ -0.29
VPS35-210ENST00000568784 MPDZO75970 2070 aa13.24□□□□□ -0.29
VPS35-210ENST00000568784 GPRIN2O60269 458 aa13.24□□□□□ -0.29
VPS35-210ENST00000568784 CD3DP04234 171 aa13.24□□□□□ -0.29
VPS35-210ENST00000568784 GPR143P51810 404 aa13.24□□□□□ -0.29
VPS35-210ENST00000568784 PWWP2BQ6NUJ5 590 aa13.24□□□□□ -0.29
VPS35-210ENST00000568784 TSSK4Q6SA08 328 aa13.24□□□□□ -0.29
VPS35-210ENST00000568784 PNO1Q9NRX1 252 aaKnown RBP13.24□□□□□ -0.29
VPS35-210ENST00000568784 FOXJ3Q9UPW0 622 aa13.24□□□□□ -0.29
VPS35-210ENST00000568784 BRWD1Q9NSI6 2320 aa13.24□□□□□ -0.29
VPS35-210ENST00000568784 CTNSO60931 367 aa13.24□□□□□ -0.29
VPS35-210ENST00000568784 MAOBP27338 520 aa13.24□□□□□ -0.29
VPS35-210ENST00000568784 PRSS3P35030 304 aa13.24□□□□□ -0.29
VPS35-210ENST00000568784 B3GNTL1Q67FW5 361 aaPredicted RBP13.24□□□□□ -0.29
VPS35-210ENST00000568784 ZNF707Q96C28 371 aaPredicted RBP13.24□□□□□ -0.29
VPS35-210ENST00000568784 TOX2Q96NM4 488 aa13.24□□□□□ -0.29
VPS35-210ENST00000568784 OR2A5Q96R48 311 aa13.24□□□□□ -0.29
VPS35-210ENST00000568784 ARPC5LQ9BPX5 153 aa13.24□□□□□ -0.29
VPS35-210ENST00000568784 OR8D2Q9GZM6 311 aa13.24□□□□□ -0.29
VPS35-210ENST00000568784 KIR3DX1Q9H7L2 352 aa13.24□□□□□ -0.29
VPS35-210ENST00000568784 SOHLH2Q9NX45 425 aa13.24□□□□□ -0.29
VPS35-210ENST00000568784 ATXN7L1Q9ULK2 861 aaPredicted RBP13.24□□□□□ -0.29
VPS35-210ENST00000568784 A0A1B0GW55 424 aa13.23□□□□□ -0.29
VPS35-210ENST00000568784 SUSD5O60279 629 aa13.23□□□□□ -0.29
VPS35-210ENST00000568784 ADH1BP00325 375 aa13.23□□□□□ -0.29
VPS35-210ENST00000568784 GIPP09681 153 aaPredicted RBP13.23□□□□□ -0.29
VPS35-210ENST00000568784 DUX4L2P0CJ85 424 aa13.23□□□□□ -0.29
VPS35-210ENST00000568784 DUX4L3P0CJ86 424 aa13.23□□□□□ -0.29
VPS35-210ENST00000568784 DUX4L4P0CJ87 422 aa13.23□□□□□ -0.29
VPS35-210ENST00000568784 DUX4L5P0CJ88 424 aa13.23□□□□□ -0.29
VPS35-210ENST00000568784 DUX4L6P0CJ89 424 aa13.23□□□□□ -0.29
VPS35-210ENST00000568784 DUX4L7P0CJ90 424 aa13.23□□□□□ -0.29
VPS35-210ENST00000568784 CTSEP14091 401 aa13.23□□□□□ -0.29
VPS35-210ENST00000568784 HOXB2P14652 356 aa13.23□□□□□ -0.29
VPS35-210ENST00000568784 CD53P19397 219 aa13.23□□□□□ -0.29
VPS35-210ENST00000568784 EIF1AXP47813 144 aaKnown RBP13.23□□□□□ -0.29
VPS35-210ENST00000568784 POU3F4P49335 361 aa13.23□□□□□ -0.29
VPS35-210ENST00000568784 DCAF12L2Q5VW00 463 aa13.23□□□□□ -0.29
VPS35-210ENST00000568784 ZNF546Q86UE3 836 aa13.23□□□□□ -0.29
VPS35-210ENST00000568784 RCBTB1Q8NDN9 531 aa13.23□□□□□ -0.29
VPS35-210ENST00000568784 DGAT2Q96PD7 388 aa13.23□□□□□ -0.29
VPS35-210ENST00000568784 CHST6Q9GZX3 395 aa13.23□□□□□ -0.29
VPS35-210ENST00000568784 DUX4Q9UBX2 424 aa13.23□□□□□ -0.29
VPS35-210ENST00000568784 DTX4Q9Y2E6 619 aa13.23□□□□□ -0.29
VPS35-210ENST00000568784 MTCL1Q9Y4B5 1905 aaKnown RBP13.23□□□□□ -0.29
VPS35-210ENST00000568784 C13orf42A0A1B0GVH6 325 aa13.23□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 29.4 ms