RNA–Protein interactions for RNA: ENST00000568357.1

VPS39-210, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 2

Gene VPS39, Length 593 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-210ENST00000568357 PRPS1P60891 318 aa13.15□□□□□ -0.3
VPS39-210ENST00000568357 POU3F1Q03052 451 aaPredicted RBP13.15□□□□□ -0.3
VPS39-210ENST00000568357 SPOCK1Q08629 439 aa13.15□□□□□ -0.3
VPS39-210ENST00000568357 TBRG1Q3YBR2 411 aa13.15□□□□□ -0.3
VPS39-210ENST00000568357 CARD17Q5XLA6 110 aa13.15□□□□□ -0.3
VPS39-210ENST00000568357 HMBOX1Q6NT76 420 aa13.15□□□□□ -0.3
VPS39-210ENST00000568357 CBLL1Q75N03 491 aa13.15□□□□□ -0.3
VPS39-210ENST00000568357 PFN4Q8NHR9 129 aa13.15□□□□□ -0.3
VPS39-210ENST00000568357 POLR2J2Q9GZM3 115 aaKnown RBP13.15□□□□□ -0.3
VPS39-210ENST00000568357 POLR2J3Q9H1A7 115 aaKnown RBP13.15□□□□□ -0.3
VPS39-210ENST00000568357 FKRPQ9H9S5 495 aa13.15□□□□□ -0.3
VPS39-210ENST00000568357 GPR35Q9HC97 309 aa13.15□□□□□ -0.3
VPS39-210ENST00000568357 NANSQ9NR45 359 aa13.15□□□□□ -0.3
VPS39-210ENST00000568357 ARL8BQ9NVJ2 186 aa13.15□□□□□ -0.3
VPS39-210ENST00000568357 A4GNTQ9UNA3 340 aa13.15□□□□□ -0.3
VPS39-210ENST00000568357 LAMP3Q9UQV4 416 aa13.15□□□□□ -0.3
VPS39-210ENST00000568357 AMDHD2Q9Y303 409 aa13.15□□□□□ -0.3
VPS39-210ENST00000568357 NOX1Q9Y5S8 564 aa13.15□□□□□ -0.3
VPS39-210ENST00000568357 MAP1AP78559 2803 aaPredicted RBP13.15□□□□□ -0.3
VPS39-210ENST00000568357 NSD1Q96L73 2696 aaPredicted RBP13.15□□□□□ -0.31
VPS39-210ENST00000568357 C11orf98E9PRG8 122 aa13.14□□□□□ -0.31
VPS39-210ENST00000568357 M0R3G1 203 aa13.14□□□□□ -0.31
VPS39-210ENST00000568357 ZNF682O95780 498 aa13.14□□□□□ -0.31
VPS39-210ENST00000568357 SERPINA1P01009 418 aa13.14□□□□□ -0.31
VPS39-210ENST00000568357 MT-ND1P03886 318 aa13.14□□□□□ -0.31
VPS39-210ENST00000568357 SOD3P08294 240 aa13.14□□□□□ -0.31
VPS39-210ENST00000568357 IFNGR1P15260 489 aa13.14□□□□□ -0.31
VPS39-210ENST00000568357 LSM11P83369 360 aaKnown RBP eCLIP13.14□□□□□ -0.31
VPS39-210ENST00000568357 ARF1P84077 181 aaKnown RBP13.14□□□□□ -0.31
VPS39-210ENST00000568357 ZP4Q12836 540 aa13.14□□□□□ -0.31
VPS39-210ENST00000568357 PGGHGQ32M88 737 aa13.14□□□□□ -0.31
VPS39-210ENST00000568357 KLHL17Q6TDP4 642 aa13.14□□□□□ -0.31
VPS39-210ENST00000568357 TMEM108Q6UXF1 575 aa13.14□□□□□ -0.31
VPS39-210ENST00000568357 SLC46A3Q7Z3Q1 461 aa13.14□□□□□ -0.31
VPS39-210ENST00000568357 C20orf196Q8IYI0 205 aa13.14□□□□□ -0.31
VPS39-210ENST00000568357 LRRC75A-AS1Q8N1F1 130 aa13.14□□□□□ -0.31
VPS39-210ENST00000568357 GPR137CQ8N3F9 429 aa13.14□□□□□ -0.31
VPS39-210ENST00000568357 PIK3C3Q8NEB9 887 aa13.14□□□□□ -0.31
VPS39-210ENST00000568357 ANKK1Q8NFD2 765 aa13.14□□□□□ -0.31
VPS39-210ENST00000568357 SMAP2Q8WU79 429 aaPredicted RBP13.14□□□□□ -0.31
VPS39-210ENST00000568357 TMEM239Q8WW34 195 aa13.14□□□□□ -0.31
VPS39-210ENST00000568357 LZICQ8WZA0 190 aa13.14□□□□□ -0.31
VPS39-210ENST00000568357 FBXW5Q969U6 566 aa13.14□□□□□ -0.31
VPS39-210ENST00000568357 KCTD14Q9BQ13 255 aaPredicted RBP13.14□□□□□ -0.31
VPS39-210ENST00000568357 NELFAQ9H3P2 528 aa13.14□□□□□ -0.31
VPS39-210ENST00000568357 CRLF2Q9HC73 371 aa13.14□□□□□ -0.31
VPS39-210ENST00000568357 C20orf141Q9NUB4 165 aa13.14□□□□□ -0.31
VPS39-210ENST00000568357 CISD1Q9NZ45 108 aaKnown RBP13.14□□□□□ -0.31
VPS39-210ENST00000568357 ZNF229Q9UJW7 825 aa13.14□□□□□ -0.31
VPS39-210ENST00000568357 ROS1P08922 2347 aa13.14□□□□□ -0.31
VPS39-210ENST00000568357 ZNF726A6NNF4 738 aa13.13□□□□□ -0.31
VPS39-210ENST00000568357 J3KTA2 159 aa13.13□□□□□ -0.31
VPS39-210ENST00000568357 NDUFAB1O14561 156 aa13.13□□□□□ -0.31
VPS39-210ENST00000568357 FFAR1O14842 300 aa13.13□□□□□ -0.31
VPS39-210ENST00000568357 OR6A2O95222 327 aa13.13□□□□□ -0.31
VPS39-210ENST00000568357 THRBP10828 461 aa13.13□□□□□ -0.31
VPS39-210ENST00000568357 FOSL1P15407 271 aa13.13□□□□□ -0.31
VPS39-210ENST00000568357 FUT1P19526 365 aa13.13□□□□□ -0.31
VPS39-210ENST00000568357 RBM34P42696 430 aaKnown RBP13.13□□□□□ -0.31
VPS39-210ENST00000568357 CAMK2DQ13557 499 aa13.13□□□□□ -0.31
VPS39-210ENST00000568357 CEACAM16Q2WEN9 425 aa13.13□□□□□ -0.31
VPS39-210ENST00000568357 ANKRD16Q6P6B7 361 aa13.13□□□□□ -0.31
VPS39-210ENST00000568357 TSEN54Q7Z6J9 526 aaKnown RBP13.13□□□□□ -0.31
VPS39-210ENST00000568357 RNF148Q8N7C7 305 aa13.13□□□□□ -0.31
VPS39-210ENST00000568357 TMEM171Q8WVE6 324 aa13.13□□□□□ -0.31
VPS39-210ENST00000568357 PERPQ96FX8 193 aa13.13□□□□□ -0.31
VPS39-210ENST00000568357 RADILQ96JH8 1075 aa13.13□□□□□ -0.31
VPS39-210ENST00000568357 LRR1Q96L50 414 aa13.13□□□□□ -0.31
VPS39-210ENST00000568357 HS6ST2Q96MM7 605 aa13.13□□□□□ -0.31
VPS39-210ENST00000568357 LRRC37BQ96QE4 947 aa13.13□□□□□ -0.31
VPS39-210ENST00000568357 CCT8L2Q96SF2 557 aa13.13□□□□□ -0.31
VPS39-210ENST00000568357 SPAG4Q9NPE6 437 aa13.13□□□□□ -0.31
VPS39-210ENST00000568357 ADA2Q9NZK5 511 aa13.13□□□□□ -0.31
VPS39-210ENST00000568357 RHCGQ9UBD6 479 aa13.13□□□□□ -0.31
VPS39-210ENST00000568357 EGFL7Q9UHF1 273 aa13.13□□□□□ -0.31
VPS39-210ENST00000568357 RAI1Q7Z5J4 1906 aaPredicted RBP13.13□□□□□ -0.31
VPS39-210ENST00000568357 FN1P02751 2386 aaKnown RBP13.12□□□□□ -0.31
VPS39-210ENST00000568357 E7EQL1 145 aa13.12□□□□□ -0.31
VPS39-210ENST00000568357 BLOC1S5-TXNDC5H3BN57 136 aa13.12□□□□□ -0.31
VPS39-210ENST00000568357 RNF13O43567 381 aa13.12□□□□□ -0.31
VPS39-210ENST00000568357 AKAP8O43823 692 aaKnown RBP13.12□□□□□ -0.31
VPS39-210ENST00000568357 WNT11O96014 354 aa13.12□□□□□ -0.31
VPS39-210ENST00000568357 CD8AP01732 235 aa13.12□□□□□ -0.31
VPS39-210ENST00000568357 HIST1H2ABP04908 130 aa13.12□□□□□ -0.31
VPS39-210ENST00000568357 IFNW1P05000 195 aa13.12□□□□□ -0.31
VPS39-210ENST00000568357 UMPSP11172 480 aa13.12□□□□□ -0.31
VPS39-210ENST00000568357 PAX1P15863 534 aa13.12□□□□□ -0.31
VPS39-210ENST00000568357 BIDP55957 195 aa13.12□□□□□ -0.31
VPS39-210ENST00000568357 TUBA1BP68363 451 aa13.12□□□□□ -0.31
VPS39-210ENST00000568357 TUBA4AP68366 448 aa13.12□□□□□ -0.31
VPS39-210ENST00000568357 ST3GAL3Q11203 375 aa13.12□□□□□ -0.31
VPS39-210ENST00000568357 IFI44LQ53G44 452 aa13.12□□□□□ -0.31
VPS39-210ENST00000568357 C1QTNF12Q5T7M4 302 aa13.12□□□□□ -0.31
VPS39-210ENST00000568357 SHEQ5VZ18 495 aa13.12□□□□□ -0.31
VPS39-210ENST00000568357 GLYATQ6IB77 296 aa13.12□□□□□ -0.31
VPS39-210ENST00000568357 SLC22A25Q6T423 547 aa13.12□□□□□ -0.31
VPS39-210ENST00000568357 KLHL24Q6TFL4 600 aa13.12□□□□□ -0.31
VPS39-210ENST00000568357 TUBA1AQ71U36 451 aa13.12□□□□□ -0.31
VPS39-210ENST00000568357 SLC35D2Q76EJ3 337 aa13.12□□□□□ -0.31
VPS39-210ENST00000568357 HIST3H2AQ7L7L0 130 aa13.12□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 37.5 ms