RNA–Protein interactions for RNA: ENST00000568191.1

VPS35-207, Transcript of VPS35, retromer complex component, humanhuman

TSL 4

Gene VPS35, Length 520 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-207ENST00000568191 HTD2P86397 168 aa1.35□□□□□ -2.19
VPS35-207ENST00000568191 ASPHQ12797 758 aa1.35□□□□□ -2.19
VPS35-207ENST00000568191 FZD2Q14332 565 aa1.35□□□□□ -2.19
VPS35-207ENST00000568191 MICBQ29980 383 aa1.35□□□□□ -2.19
VPS35-207ENST00000568191 DMRTC1Q5HYR2 192 aa1.35□□□□□ -2.19
VPS35-207ENST00000568191 HSDL2Q6YN16 418 aa1.35□□□□□ -2.19
VPS35-207ENST00000568191 ZNF546Q86UE3 836 aa1.35□□□□□ -2.19
VPS35-207ENST00000568191 SLC35F2Q8IXU6 374 aa1.35□□□□□ -2.19
VPS35-207ENST00000568191 ACOT4Q8N9L9 421 aa1.35□□□□□ -2.19
VPS35-207ENST00000568191 OR52H1Q8NGJ2 320 aa1.35□□□□□ -2.19
VPS35-207ENST00000568191 OR4D5Q8NGN0 318 aa1.35□□□□□ -2.19
VPS35-207ENST00000568191 OR2T34Q8NGX1 318 aa1.35□□□□□ -2.19
VPS35-207ENST00000568191 OR2G3Q8NGZ4 309 aa1.35□□□□□ -2.19
VPS35-207ENST00000568191 TM4SF19Q96DZ7 209 aa1.35□□□□□ -2.19
VPS35-207ENST00000568191 NAP1L5Q96NT1 182 aaPredicted RBP1.35□□□□□ -2.19
VPS35-207ENST00000568191 THUMPD2Q9BTF0 503 aaKnown RBP1.35□□□□□ -2.19
VPS35-207ENST00000568191 LIN28AQ9H9Z2 209 aaKnown RBP1.35□□□□□ -2.19
VPS35-207ENST00000568191 NOX3Q9HBY0 568 aa1.35□□□□□ -2.19
VPS35-207ENST00000568191 TAS2R3Q9NYW6 316 aa1.35□□□□□ -2.19
VPS35-207ENST00000568191 KCNIP1Q9NZI2 227 aa1.35□□□□□ -2.19
VPS35-207ENST00000568191 PCSK1NQ9UHG2 260 aa1.35□□□□□ -2.19
VPS35-207ENST00000568191 ZNF222Q9UK12 451 aa1.35□□□□□ -2.19
VPS35-207ENST00000568191 AURKCQ9UQB9 309 aa1.35□□□□□ -2.19
VPS35-207ENST00000568191 TIMM10BQ9Y5J6 103 aa1.35□□□□□ -2.19
VPS35-207ENST00000568191 COL27A1Q8IZC6 1860 aaPredicted RBP1.35□□□□□ -2.19
VPS35-207ENST00000568191 TCRBV9S1A1TA0A576 114 aa1.34□□□□□ -2.19
VPS35-207ENST00000568191 METTL21EPA6NDL7 271 aa1.34□□□□□ -2.19
VPS35-207ENST00000568191 CCDC182A6NF36 153 aa1.34□□□□□ -2.19
VPS35-207ENST00000568191 ZNF705GA8MUZ8 300 aaPredicted RBP1.34□□□□□ -2.19
VPS35-207ENST00000568191 NPIPA7E9PJI5 369 aa1.34□□□□□ -2.19
VPS35-207ENST00000568191 CLDN3O15551 220 aa1.34□□□□□ -2.19
VPS35-207ENST00000568191 ATP5LO75964 103 aa1.34□□□□□ -2.19
VPS35-207ENST00000568191 DIRAS1O95057 198 aa1.34□□□□□ -2.19
VPS35-207ENST00000568191 OXSR1O95747 527 aaPredicted RBP1.34□□□□□ -2.19
VPS35-207ENST00000568191 NPIPA8P0DM63 369 aa1.34□□□□□ -2.19
VPS35-207ENST00000568191 KRT13P13646 458 aa1.34□□□□□ -2.19
VPS35-207ENST00000568191 NCK1P16333 377 aa1.34□□□□□ -2.19
VPS35-207ENST00000568191 ZNF30P17039 623 aa1.34□□□□□ -2.19
VPS35-207ENST00000568191 OMGP23515 440 aa1.34□□□□□ -2.19
VPS35-207ENST00000568191 DDOSTP39656 456 aa1.34□□□□□ -2.19
VPS35-207ENST00000568191 NCBP2P52298 156 aaKnown RBP eCLIP1.34□□□□□ -2.19
VPS35-207ENST00000568191 KRTAP12-3P60328 96 aa1.34□□□□□ -2.19
VPS35-207ENST00000568191 POLR2FP61218 127 aaKnown RBP1.34□□□□□ -2.19
VPS35-207ENST00000568191 SGCAQ16586 387 aa1.34□□□□□ -2.19
VPS35-207ENST00000568191 DUSP7Q16829 419 aa1.34□□□□□ -2.19
VPS35-207ENST00000568191 VAX1Q5SQQ9 334 aa1.34□□□□□ -2.19
VPS35-207ENST00000568191 AFTPHQ6ULP2 937 aa1.34□□□□□ -2.19
VPS35-207ENST00000568191 UQCC3Q6UW78 93 aa1.34□□□□□ -2.19
VPS35-207ENST00000568191 LYPD2Q6UXB3 125 aa1.34□□□□□ -2.19
VPS35-207ENST00000568191 LINC00173Q6ZV60 143 aa1.34□□□□□ -2.19
VPS35-207ENST00000568191 ZDHHC21Q8IVQ6 265 aa1.34□□□□□ -2.19
VPS35-207ENST00000568191 ZNF679Q8IYX0 411 aa1.34□□□□□ -2.19
VPS35-207ENST00000568191 LINC00304Q8N9R0 145 aa1.34□□□□□ -2.19
VPS35-207ENST00000568191 ACTRT1Q8TDG2 376 aa1.34□□□□□ -2.19
VPS35-207ENST00000568191 NEURL3Q96EH8 262 aa1.34□□□□□ -2.19
VPS35-207ENST00000568191 OR2A5Q96R48 311 aa1.34□□□□□ -2.19
VPS35-207ENST00000568191 CCT7Q99832 543 aa1.34□□□□□ -2.19
VPS35-207ENST00000568191 UGT1A7Q9HAW7 530 aa1.34□□□□□ -2.19
VPS35-207ENST00000568191 UGT1A10Q9HAW8 530 aa1.34□□□□□ -2.19
VPS35-207ENST00000568191 UGT1A8Q9HAW9 530 aa1.34□□□□□ -2.19
VPS35-207ENST00000568191 SLC40A1Q9NP59 571 aa1.34□□□□□ -2.19
VPS35-207ENST00000568191 NPIPA1Q9UND3 350 aa1.34□□□□□ -2.19
VPS35-207ENST00000568191 POLDIP2Q9Y2S7 368 aa1.34□□□□□ -2.19
VPS35-207ENST00000568191 RPL36Q9Y3U8 105 aaKnown RBP1.34□□□□□ -2.19
VPS35-207ENST00000568191 OR10H1Q9Y4A9 318 aa1.34□□□□□ -2.19
VPS35-207ENST00000568191 TMEM14AQ9Y6G1 99 aa1.34□□□□□ -2.19
VPS35-207ENST00000568191 FANCIQ9NVI1 1328 aa1.34□□□□□ -2.2
VPS35-207ENST00000568191 KDRP35968 1356 aa1.34□□□□□ -2.2
VPS35-207ENST00000568191 IGKV1D-13A0A0B4J2D9 117 aa1.33□□□□□ -2.2
VPS35-207ENST00000568191 IGHV3-66A0A0C4DH42 116 aa1.33□□□□□ -2.2
VPS35-207ENST00000568191 LOC110117498-PIK3R3F6TDL0 507 aa1.33□□□□□ -2.2
VPS35-207ENST00000568191 K7EM74 188 aa1.33□□□□□ -2.2
VPS35-207ENST00000568191 HSD17B6O14756 317 aa1.33□□□□□ -2.2
VPS35-207ENST00000568191 ALDOBP05062 364 aa1.33□□□□□ -2.2
VPS35-207ENST00000568191 IL4P05112 153 aa1.33□□□□□ -2.2
VPS35-207ENST00000568191 ADRA2AP08913 450 aa1.33□□□□□ -2.2
VPS35-207ENST00000568191 IQCF3P0C7M6 154 aa1.33□□□□□ -2.2
VPS35-207ENST00000568191 IGKV1-13P0DP09 117 aa1.33□□□□□ -2.2
VPS35-207ENST00000568191 SOX6P35712 828 aa1.33□□□□□ -2.2
VPS35-207ENST00000568191 TDO2P48775 406 aa1.33□□□□□ -2.2
VPS35-207ENST00000568191 OXA1LQ15070 435 aa1.33□□□□□ -2.2
VPS35-207ENST00000568191 INAQ16352 499 aa1.33□□□□□ -2.2
VPS35-207ENST00000568191 ZBED5Q49AG3 693 aa1.33□□□□□ -2.2
VPS35-207ENST00000568191 CES3Q6UWW8 571 aa1.33□□□□□ -2.2
VPS35-207ENST00000568191 FAM43BQ6ZT52 329 aaPredicted RBP1.33□□□□□ -2.2
VPS35-207ENST00000568191 CCDC80Q76M96 950 aa1.33□□□□□ -2.2
VPS35-207ENST00000568191 NLRP9Q7RTR0 991 aa1.33□□□□□ -2.2
VPS35-207ENST00000568191 CCDC65Q8IXS2 484 aa1.33□□□□□ -2.2
VPS35-207ENST00000568191 PIANPQ8IYJ0 282 aa1.33□□□□□ -2.2
VPS35-207ENST00000568191 IPMKQ8NFU5 416 aa1.33□□□□□ -2.2
VPS35-207ENST00000568191 RBMXL1Q96E39 390 aaKnown RBP1.33□□□□□ -2.2
VPS35-207ENST00000568191 DTNBP1Q96EV8 351 aa1.33□□□□□ -2.2
VPS35-207ENST00000568191 RIOK2Q9BVS4 552 aaKnown RBP1.33□□□□□ -2.2
VPS35-207ENST00000568191 LINC00597Q9H2U6 94 aa1.33□□□□□ -2.2
VPS35-207ENST00000568191 REEP4Q9H6H4 257 aa1.33□□□□□ -2.2
VPS35-207ENST00000568191 CTPS2Q9NRF8 586 aa1.33□□□□□ -2.2
VPS35-207ENST00000568191 ZNF355PQ9NSJ1 428 aa1.33□□□□□ -2.2
VPS35-207ENST00000568191 ZNRD1Q9P1U0 126 aa1.33□□□□□ -2.2
VPS35-207ENST00000568191 LAMP5Q9UJQ1 280 aa1.33□□□□□ -2.2
VPS35-207ENST00000568191 TUBGCP6Q96RT7 1819 aa1.32□□□□□ -2.2
Retrieved 100 of 20,778 RNA–protein pairs in 81.7 ms