RNA–Protein interactions for RNA: ENST00000562078.5

CLK3-206, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 2,455 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-206ENST00000562078 MAT2AP31153 395 aaKnown RBP12.18□□□□□ -0.46
CLK3-206ENST00000562078 STAT5AP42229 794 aa12.18□□□□□ -0.46
CLK3-206ENST00000562078 TDGQ13569 410 aa12.18□□□□□ -0.46
CLK3-206ENST00000562078 PDE7AQ13946 482 aa12.18□□□□□ -0.46
CLK3-206ENST00000562078 PRSS53Q2L4Q9 553 aa12.18□□□□□ -0.46
CLK3-206ENST00000562078 PYY3Q5JQD4 70 aa12.18□□□□□ -0.46
CLK3-206ENST00000562078 PRPF38BQ5VTL8 546 aaKnown RBP12.18□□□□□ -0.46
CLK3-206ENST00000562078 FAM71E1Q6IPT2 247 aa12.18□□□□□ -0.46
CLK3-206ENST00000562078 CDC73Q6P1J9 531 aa12.18□□□□□ -0.46
CLK3-206ENST00000562078 PLBD1Q6P4A8 553 aa12.18□□□□□ -0.46
CLK3-206ENST00000562078 CD300LDQ6UXZ3 194 aa12.18□□□□□ -0.46
CLK3-206ENST00000562078 CXXC5Q7LFL8 322 aaKnown RBP12.18□□□□□ -0.46
CLK3-206ENST00000562078 SSX6Q7RTT6 188 aa12.18□□□□□ -0.46
CLK3-206ENST00000562078 SLC36A1Q7Z2H8 476 aa12.18□□□□□ -0.46
CLK3-206ENST00000562078 ZSCAN2Q7Z7L9 614 aaPredicted RBP12.18□□□□□ -0.46
CLK3-206ENST00000562078 OR4A4PQ8NGN8 299 aa12.18□□□□□ -0.46
CLK3-206ENST00000562078 PAQR8Q8TEZ7 354 aa12.18□□□□□ -0.46
CLK3-206ENST00000562078 TNFAIP8L1Q8WVP5 186 aa12.18□□□□□ -0.46
CLK3-206ENST00000562078 FAM3CQ92520 227 aa12.18□□□□□ -0.46
CLK3-206ENST00000562078 SEC11CQ9BY50 192 aa12.18□□□□□ -0.46
CLK3-206ENST00000562078 EGLN1Q9GZT9 426 aa12.18□□□□□ -0.46
CLK3-206ENST00000562078 PLEKHA1Q9HB21 404 aa12.18□□□□□ -0.46
CLK3-206ENST00000562078 MEPEQ9NQ76 525 aaPredicted RBP12.18□□□□□ -0.46
CLK3-206ENST00000562078 UQCC1Q9NVA1 299 aa12.18□□□□□ -0.46
CLK3-206ENST00000562078 CNIH4Q9P003 139 aa12.18□□□□□ -0.46
CLK3-206ENST00000562078 EXOGQ9Y2C4 368 aaKnown RBP12.18□□□□□ -0.46
CLK3-206ENST00000562078 FAM96BQ9Y3D0 163 aa12.18□□□□□ -0.46
CLK3-206ENST00000562078 ARHGEF17Q96PE2 2063 aaPredicted RBP12.17□□□□□ -0.46
CLK3-206ENST00000562078 A0A1W2PQU0 124 aa12.17□□□□□ -0.46
CLK3-206ENST00000562078 URADA6NGE7 173 aa12.17□□□□□ -0.46
CLK3-206ENST00000562078 RTCAO00442 366 aaKnown RBP12.17□□□□□ -0.46
CLK3-206ENST00000562078 FADS1O60427 444 aa12.17□□□□□ -0.46
CLK3-206ENST00000562078 KRT33AO76009 404 aa12.17□□□□□ -0.46
CLK3-206ENST00000562078 SERPIND1P05546 499 aa12.17□□□□□ -0.46
CLK3-206ENST00000562078 SRFP11831 508 aa12.17□□□□□ -0.46
CLK3-206ENST00000562078 IL9P15248 144 aa12.17□□□□□ -0.46
CLK3-206ENST00000562078 ITGA3P26006 1051 aa12.17□□□□□ -0.46
CLK3-206ENST00000562078 TRHRP34981 398 aaPredicted RBP12.17□□□□□ -0.46
CLK3-206ENST00000562078 AP3S2P59780 193 aa12.17□□□□□ -0.46
CLK3-206ENST00000562078 RNF4P78317 190 aa12.17□□□□□ -0.46
CLK3-206ENST00000562078 FOXK2Q01167 660 aa12.17□□□□□ -0.46
CLK3-206ENST00000562078 POU4F2Q12837 409 aa12.17□□□□□ -0.46
CLK3-206ENST00000562078 SGCGQ13326 291 aa12.17□□□□□ -0.46
CLK3-206ENST00000562078 ARHGAP19Q14CB8 494 aa12.17□□□□□ -0.46
CLK3-206ENST00000562078 AGERQ15109 404 aa12.17□□□□□ -0.46
CLK3-206ENST00000562078 ZNF561Q8N587 486 aa12.17□□□□□ -0.46
CLK3-206ENST00000562078 POMGNT2Q8NAT1 580 aa12.17□□□□□ -0.46
CLK3-206ENST00000562078 DNAAF1Q8NEP3 725 aa12.17□□□□□ -0.46
CLK3-206ENST00000562078 OR5J2Q8NH18 312 aa12.17□□□□□ -0.46
CLK3-206ENST00000562078 RAB8BQ92930 207 aa12.17□□□□□ -0.46
CLK3-206ENST00000562078 RFKQ969G6 155 aa12.17□□□□□ -0.46
CLK3-206ENST00000562078 TMEM19Q96HH6 336 aa12.17□□□□□ -0.46
CLK3-206ENST00000562078 LURAP1Q96LR2 239 aa12.17□□□□□ -0.46
CLK3-206ENST00000562078 MOGAT1Q96PD6 335 aa12.17□□□□□ -0.46
CLK3-206ENST00000562078 UTP23Q9BRU9 249 aaKnown RBP12.17□□□□□ -0.46
CLK3-206ENST00000562078 OR51I1Q9H343 314 aa12.17□□□□□ -0.46
CLK3-206ENST00000562078 KLHL9Q9P2J3 617 aa12.17□□□□□ -0.46
CLK3-206ENST00000562078 H7BY64 318 aa12.17□□□□□ -0.46
CLK3-206ENST00000562078 PLPP1O14494 284 aa12.17□□□□□ -0.46
CLK3-206ENST00000562078 TBX6O95947 436 aaPredicted RBP12.17□□□□□ -0.46
CLK3-206ENST00000562078 COL9A1P20849 921 aa12.17□□□□□ -0.46
CLK3-206ENST00000562078 ADH6P28332 368 aa12.17□□□□□ -0.46
CLK3-206ENST00000562078 F2RL1P55085 397 aa12.17□□□□□ -0.46
CLK3-206ENST00000562078 RPS21P63220 83 aaKnown RBP12.17□□□□□ -0.46
CLK3-206ENST00000562078 MRPS21P82921 87 aaKnown RBP12.17□□□□□ -0.46
CLK3-206ENST00000562078 MLF2Q15773 248 aaPredicted RBP12.17□□□□□ -0.46
CLK3-206ENST00000562078 CDNFQ49AH0 187 aa12.17□□□□□ -0.46
CLK3-206ENST00000562078 ACSM3Q53FZ2 586 aa12.17□□□□□ -0.46
CLK3-206ENST00000562078 ENTPD8Q5MY95 495 aa12.17□□□□□ -0.46
CLK3-206ENST00000562078 C1orf94Q6P1W5 598 aa12.17□□□□□ -0.46
CLK3-206ENST00000562078 PXKQ7Z7A4 578 aa12.17□□□□□ -0.46
CLK3-206ENST00000562078 TMEM99Q8N816 258 aa12.17□□□□□ -0.46
CLK3-206ENST00000562078 LINC01555Q8NAE3 123 aa12.17□□□□□ -0.46
CLK3-206ENST00000562078 MORN4Q8NDC4 146 aa12.17□□□□□ -0.46
CLK3-206ENST00000562078 SMPDL3AQ92484 453 aa12.17□□□□□ -0.46
CLK3-206ENST00000562078 SLC25A38Q96DW6 304 aa12.17□□□□□ -0.46
CLK3-206ENST00000562078 PRAP1Q96NZ9 151 aa12.17□□□□□ -0.46
CLK3-206ENST00000562078 DERL3Q96Q80 235 aa12.17□□□□□ -0.46
CLK3-206ENST00000562078 AIF1LQ9BQI0 150 aa12.17□□□□□ -0.46
CLK3-206ENST00000562078 FNDC11Q9BVV2 318 aa12.17□□□□□ -0.46
CLK3-206ENST00000562078 MIEF1Q9NQG6 463 aa12.17□□□□□ -0.46
CLK3-206ENST00000562078 AK6Q9Y3D8 172 aaKnown RBP12.17□□□□□ -0.46
CLK3-206ENST00000562078 NPFFR2Q9Y5X5 522 aa12.17□□□□□ -0.46
CLK3-206ENST00000562078 A0A0D9SG52 128 aa12.16□□□□□ -0.46
CLK3-206ENST00000562078 A0A1W2PPV9 198 aa12.16□□□□□ -0.46
CLK3-206ENST00000562078 A0A1W2PRQ8 180 aa12.16□□□□□ -0.46
CLK3-206ENST00000562078 ANKRD20A5PA0PJZ0 165 aa12.16□□□□□ -0.46
CLK3-206ENST00000562078 ANKRD61A6NGH8 418 aa12.16□□□□□ -0.46
CLK3-206ENST00000562078 ZNF879B4DU55 563 aa12.16□□□□□ -0.46
CLK3-206ENST00000562078 GABARAPH6UMI1 98 aa12.16□□□□□ -0.46
CLK3-206ENST00000562078 SMAD9O15198 467 aaKnown RBP12.16□□□□□ -0.46
CLK3-206ENST00000562078 RCC1P18754 421 aaPredicted RBP12.16□□□□□ -0.46
CLK3-206ENST00000562078 IGFALSP35858 605 aa12.16□□□□□ -0.46
CLK3-206ENST00000562078 MECP2P51608 486 aaKnown RBP12.16□□□□□ -0.46
CLK3-206ENST00000562078 TFF2Q03403 129 aa12.16□□□□□ -0.46
CLK3-206ENST00000562078 ATXN7L3Q14CW9 347 aaPredicted RBP12.16□□□□□ -0.46
CLK3-206ENST00000562078 NDUFA9Q16795 377 aa12.16□□□□□ -0.46
CLK3-206ENST00000562078 OLFML2AQ68BL7 652 aa12.16□□□□□ -0.46
CLK3-206ENST00000562078 BAIAP2L2Q6UXY1 529 aa12.16□□□□□ -0.46
CLK3-206ENST00000562078 MAMDC2Q7Z304 686 aaPredicted RBP12.16□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 43.8 ms