RNA–Protein interactions for RNA: ENST00000557433.5

SHMT2-231, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 1 (best)

Gene SHMT2, Length 1,904 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-231ENST00000557433 ITPKBP27987 946 aa14.85□□□□□ -0.03
SHMT2-231ENST00000557433 CLDN12P56749 244 aa14.85□□□□□ -0.03
SHMT2-231ENST00000557433 MAT1AQ00266 395 aaKnown RBP14.85□□□□□ -0.03
SHMT2-231ENST00000557433 EGR3Q06889 387 aa14.85□□□□□ -0.03
SHMT2-231ENST00000557433 BTN1A1Q13410 526 aa14.85□□□□□ -0.03
SHMT2-231ENST00000557433 PCGF3Q3KNV8 242 aa14.85□□□□□ -0.03
SHMT2-231ENST00000557433 PRRT3Q5FWE3 981 aa14.85□□□□□ -0.03
SHMT2-231ENST00000557433 RNF44Q7L0R7 432 aa14.85□□□□□ -0.03
SHMT2-231ENST00000557433 TMPRSS12Q86WS5 348 aa14.85□□□□□ -0.03
SHMT2-231ENST00000557433 COQ8AQ8NI60 647 aa14.85□□□□□ -0.03
SHMT2-231ENST00000557433 CCDC107Q8WV48 283 aa14.85□□□□□ -0.03
SHMT2-231ENST00000557433 ZNRF4Q8WWF5 429 aa14.85□□□□□ -0.03
SHMT2-231ENST00000557433 EDAQ92838 391 aa14.85□□□□□ -0.03
SHMT2-231ENST00000557433 TOE1Q96GM8 510 aaKnown RBP14.85□□□□□ -0.03
SHMT2-231ENST00000557433 FAM221BA6H8Z2 402 aa14.84□□□□□ -0.03
SHMT2-231ENST00000557433 ZNF860A6NHJ4 632 aa14.84□□□□□ -0.03
SHMT2-231ENST00000557433 NARSO43776 548 aaKnown RBP14.84□□□□□ -0.03
SHMT2-231ENST00000557433 OR10H2O60403 315 aa14.84□□□□□ -0.03
SHMT2-231ENST00000557433 ABHD16AO95870 558 aa14.84□□□□□ -0.03
SHMT2-231ENST00000557433 TXNDC12O95881 172 aa14.84□□□□□ -0.03
SHMT2-231ENST00000557433 PNMTP11086 282 aa14.84□□□□□ -0.03
SHMT2-231ENST00000557433 AGTR1P30556 359 aa14.84□□□□□ -0.03
SHMT2-231ENST00000557433 CSF2RBP32927 897 aa14.84□□□□□ -0.03
SHMT2-231ENST00000557433 GRK6P43250 576 aa14.84□□□□□ -0.03
SHMT2-231ENST00000557433 RASGEF1BQ0VAM2 473 aa14.84□□□□□ -0.03
SHMT2-231ENST00000557433 TCEA2Q15560 299 aa14.84□□□□□ -0.03
SHMT2-231ENST00000557433 LEG1Q6P5S2 330 aa14.84□□□□□ -0.03
SHMT2-231ENST00000557433 EXD3Q8N9H8 876 aa14.84□□□□□ -0.03
SHMT2-231ENST00000557433 ZBTB44Q8NCP5 570 aa14.84□□□□□ -0.03
SHMT2-231ENST00000557433 TMEM52Q8NDY8 209 aa14.84□□□□□ -0.03
SHMT2-231ENST00000557433 OR14C36Q8NHC7 312 aa14.84□□□□□ -0.03
SHMT2-231ENST00000557433 TRIM43Q96BQ3 446 aaPredicted RBP14.84□□□□□ -0.03
SHMT2-231ENST00000557433 CXorf58Q96LI9 332 aa14.84□□□□□ -0.03
SHMT2-231ENST00000557433 ADAD1Q96M93 576 aaKnown RBP14.84□□□□□ -0.03
SHMT2-231ENST00000557433 ZDHHC4Q9NPG8 344 aa14.84□□□□□ -0.03
SHMT2-231ENST00000557433 TMEM74BQ9NUR3 256 aa14.84□□□□□ -0.03
SHMT2-231ENST00000557433 GDE1Q9NZC3 331 aa14.84□□□□□ -0.03
SHMT2-231ENST00000557433 CDV3Q9UKY7 258 aaKnown RBP14.84□□□□□ -0.03
SHMT2-231ENST00000557433 HIF3AQ9Y2N7 669 aa14.84□□□□□ -0.03
SHMT2-231ENST00000557433 YBX2Q9Y2T7 364 aaKnown RBP14.84□□□□□ -0.03
SHMT2-231ENST00000557433 TMEM14AQ9Y6G1 99 aa14.84□□□□□ -0.03
SHMT2-231ENST00000557433 SLC22A23A1A5C7 686 aa14.84□□□□□ -0.03
SHMT2-231ENST00000557433 BLACEA4D250 179 aa14.84□□□□□ -0.03
SHMT2-231ENST00000557433 GGT3PA6NGU5 568 aa14.84□□□□□ -0.03
SHMT2-231ENST00000557433 D6RAR5 112 aa14.84□□□□□ -0.03
SHMT2-231ENST00000557433 SULT1C2O00338 296 aa14.84□□□□□ -0.03
SHMT2-231ENST00000557433 LPLP06858 475 aa14.84□□□□□ -0.03
SHMT2-231ENST00000557433 CD14P08571 375 aa14.84□□□□□ -0.03
SHMT2-231ENST00000557433 ADRA2CP18825 462 aa14.84□□□□□ -0.03
SHMT2-231ENST00000557433 CSRP1P21291 193 aaKnown RBP14.84□□□□□ -0.03
SHMT2-231ENST00000557433 ERVK-25P63136 954 aa14.84□□□□□ -0.03
SHMT2-231ENST00000557433 LIPNQ5VXI9 398 aa14.84□□□□□ -0.03
SHMT2-231ENST00000557433 TSSK4Q6SA08 328 aa14.84□□□□□ -0.03
SHMT2-231ENST00000557433 NUP54Q7Z3B4 507 aa14.84□□□□□ -0.03
SHMT2-231ENST00000557433 CDC20BQ86Y33 519 aa14.84□□□□□ -0.03
SHMT2-231ENST00000557433 OR4C16Q8NGL9 310 aa14.84□□□□□ -0.03
SHMT2-231ENST00000557433 BAHD1Q8TBE0 780 aaPredicted RBP14.84□□□□□ -0.03
SHMT2-231ENST00000557433 GPR148Q8TDV2 347 aa14.84□□□□□ -0.03
SHMT2-231ENST00000557433 TSPAN10Q9H1Z9 355 aaPredicted RBP14.84□□□□□ -0.03
SHMT2-231ENST00000557433 CCDC86Q9H6F5 360 aaKnown RBP14.84□□□□□ -0.03
SHMT2-231ENST00000557433 Q9N2J8 555 aa14.84□□□□□ -0.03
SHMT2-231ENST00000557433 MRM2Q9UI43 246 aaKnown RBP14.84□□□□□ -0.03
SHMT2-231ENST00000557433 FXYD6-FXYD2A0A087WZ82 144 aa14.83□□□□□ -0.04
SHMT2-231ENST00000557433 UBBP0CG47 229 aa14.83□□□□□ -0.04
SHMT2-231ENST00000557433 UBCP0CG48 685 aaKnown RBP14.83□□□□□ -0.04
SHMT2-231ENST00000557433 S1PR1P21453 382 aa14.83□□□□□ -0.04
SHMT2-231ENST00000557433 SDHBP21912 280 aa14.83□□□□□ -0.04
SHMT2-231ENST00000557433 H2BFSP57053 126 aa14.83□□□□□ -0.04
SHMT2-231ENST00000557433 RPS27AP62979 156 aaKnown RBP14.83□□□□□ -0.04
SHMT2-231ENST00000557433 UBA52P62987 128 aaKnown RBP14.83□□□□□ -0.04
SHMT2-231ENST00000557433 FGL1Q08830 312 aa14.83□□□□□ -0.04
SHMT2-231ENST00000557433 EIF2B5Q13144 721 aaKnown RBP14.83□□□□□ -0.04
SHMT2-231ENST00000557433 ALKAL2Q6UX46 152 aa14.83□□□□□ -0.04
SHMT2-231ENST00000557433 NHLRC1Q6VVB1 395 aa14.83□□□□□ -0.04
SHMT2-231ENST00000557433 DOK4Q8TEW6 326 aa14.83□□□□□ -0.04
SHMT2-231ENST00000557433 ZDHHC1Q8WTX9 485 aa14.83□□□□□ -0.04
SHMT2-231ENST00000557433 RASD2Q96D21 266 aa14.83□□□□□ -0.04
SHMT2-231ENST00000557433 VSTM2LQ96N03 204 aa14.83□□□□□ -0.04
SHMT2-231ENST00000557433 FXYD6Q9H0Q3 95 aa14.83□□□□□ -0.04
SHMT2-231ENST00000557433 C1orf198Q9H425 327 aa14.83□□□□□ -0.04
SHMT2-231ENST00000557433 FBRSQ9HAH7 460 aa14.83□□□□□ -0.04
SHMT2-231ENST00000557433 APMAPQ9HDC9 416 aa14.83□□□□□ -0.04
SHMT2-231ENST00000557433 MYOZ1Q9NP98 299 aaPredicted RBP14.83□□□□□ -0.04
SHMT2-231ENST00000557433 FRRS1LQ9P0K9 344 aa14.83□□□□□ -0.04
SHMT2-231ENST00000557433 MRPS2Q9Y399 296 aaKnown RBP14.83□□□□□ -0.04
SHMT2-231ENST00000557433 SCN3AQ9NY46 2000 aa14.83□□□□□ -0.04
SHMT2-231ENST00000557433 A0A0D9SG52 128 aa14.82□□□□□ -0.04
SHMT2-231ENST00000557433 SERINC4A6NH21 518 aa14.82□□□□□ -0.04
SHMT2-231ENST00000557433 RFPL4AA6NLU0 287 aa14.82□□□□□ -0.04
SHMT2-231ENST00000557433 OR4C45A6NMZ5 311 aa14.82□□□□□ -0.04
SHMT2-231ENST00000557433 A8MUA0 341 aa14.82□□□□□ -0.04
SHMT2-231ENST00000557433 C2orf74A8MZ97 194 aa14.82□□□□□ -0.04
SHMT2-231ENST00000557433 IDSB3KWA1 339 aa14.82□□□□□ -0.04
SHMT2-231ENST00000557433 RFPL4AL1F8VTS6 287 aa14.82□□□□□ -0.04
SHMT2-231ENST00000557433 CDC40O60508 579 aaKnown RBP eCLIP14.82□□□□□ -0.04
SHMT2-231ENST00000557433 SRPX2O60687 465 aaPredicted RBP14.82□□□□□ -0.04
SHMT2-231ENST00000557433 SDC3O75056 442 aa14.82□□□□□ -0.04
SHMT2-231ENST00000557433 PMS2P2O95744 297 aa14.82□□□□□ -0.04
SHMT2-231ENST00000557433 EML2O95834 649 aa14.82□□□□□ -0.04
SHMT2-231ENST00000557433 CSTAP01040 98 aa14.82□□□□□ -0.04
Retrieved 100 of 20,778 RNA–protein pairs in 47.8 ms