RNA–Protein interactions for RNA: ENST00000555774.5

SHMT2-222, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 1 (best)

Gene SHMT2, Length 2,311 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-222ENST00000555774 PIAS4Q8N2W9 510 aaPredicted RBP12.28□□□□□ -0.44
SHMT2-222ENST00000555774 OR11G2Q8NGC1 345 aa12.28□□□□□ -0.44
SHMT2-222ENST00000555774 OR11H4Q8NGC9 324 aa12.28□□□□□ -0.44
SHMT2-222ENST00000555774 NXPE2Q96DL1 559 aa12.28□□□□□ -0.44
SHMT2-222ENST00000555774 MMABQ96EY8 250 aaPredicted RBP12.28□□□□□ -0.44
SHMT2-222ENST00000555774 KLHDC7BQ96G42 594 aa12.28□□□□□ -0.44
SHMT2-222ENST00000555774 MED30Q96HR3 178 aa12.28□□□□□ -0.44
SHMT2-222ENST00000555774 SLC46A1Q96NT5 459 aa12.28□□□□□ -0.44
SHMT2-222ENST00000555774 GAS2L1Q99501 681 aaPredicted RBP12.28□□□□□ -0.44
SHMT2-222ENST00000555774 MAP3K3Q99759 626 aa12.28□□□□□ -0.44
SHMT2-222ENST00000555774 UTP23Q9BRU9 249 aaKnown RBP12.28□□□□□ -0.44
SHMT2-222ENST00000555774 LRRC61Q9BV99 259 aa12.28□□□□□ -0.44
SHMT2-222ENST00000555774 LDHAL6BQ9BYZ2 381 aaPredicted RBP12.28□□□□□ -0.44
SHMT2-222ENST00000555774 ZNF436Q9C0F3 470 aaPredicted RBP12.28□□□□□ -0.44
SHMT2-222ENST00000555774 GRHPRQ9UBQ7 328 aa12.28□□□□□ -0.44
SHMT2-222ENST00000555774 GMEB2Q9UKD1 530 aa12.28□□□□□ -0.44
SHMT2-222ENST00000555774 MMACHCQ9Y4U1 282 aa12.28□□□□□ -0.44
SHMT2-222ENST00000555774 AUP1Q9Y679 476 aa12.28□□□□□ -0.44
SHMT2-222ENST00000555774 TMEM72A0PK05 275 aa12.27□□□□□ -0.44
SHMT2-222ENST00000555774 FITM1A5D6W6 292 aa12.27□□□□□ -0.44
SHMT2-222ENST00000555774 C17orf105B2RV13 164 aa12.27□□□□□ -0.44
SHMT2-222ENST00000555774 ZNF254O75437 659 aa12.27□□□□□ -0.44
SHMT2-222ENST00000555774 KHDRBS3O75525 346 aaKnown RBP12.27□□□□□ -0.44
SHMT2-222ENST00000555774 RENP00797 406 aa12.27□□□□□ -0.44
SHMT2-222ENST00000555774 PROS1P07225 676 aa12.27□□□□□ -0.44
SHMT2-222ENST00000555774 OR8G3PP0DMU2 310 aa12.27□□□□□ -0.44
SHMT2-222ENST00000555774 CFPP27918 469 aa12.27□□□□□ -0.44
SHMT2-222ENST00000555774 ZNF511Q8NB15 262 aa12.27□□□□□ -0.44
SHMT2-222ENST00000555774 C7orf57Q8NEG2 295 aa12.27□□□□□ -0.44
SHMT2-222ENST00000555774 ZNF680Q8NEM1 530 aa12.27□□□□□ -0.44
SHMT2-222ENST00000555774 PHOSPHO1Q8TCT1 267 aa12.27□□□□□ -0.44
SHMT2-222ENST00000555774 TOE1Q96GM8 510 aaKnown RBP12.27□□□□□ -0.44
SHMT2-222ENST00000555774 KLHL15Q96M94 604 aa12.27□□□□□ -0.44
SHMT2-222ENST00000555774 MOGAT1Q96PD6 335 aa12.27□□□□□ -0.44
SHMT2-222ENST00000555774 LAT2Q9GZY6 243 aa12.27□□□□□ -0.44
SHMT2-222ENST00000555774 COMMD4Q9H0A8 199 aa12.27□□□□□ -0.44
SHMT2-222ENST00000555774 HEXA-AS1Q9H8Q6 139 aa12.27□□□□□ -0.44
SHMT2-222ENST00000555774 WDR76Q9H967 626 aa12.27□□□□□ -0.44
SHMT2-222ENST00000555774 FKRPQ9H9S5 495 aa12.27□□□□□ -0.44
SHMT2-222ENST00000555774 FKBP7Q9Y680 259 aa12.27□□□□□ -0.44
SHMT2-222ENST00000555774 TRBV5-7A0A0A0MS05 114 aa12.27□□□□□ -0.45
SHMT2-222ENST00000555774 FRG2CA6NGY1 282 aa12.27□□□□□ -0.45
SHMT2-222ENST00000555774 TMEM212A6NML5 194 aa12.27□□□□□ -0.45
SHMT2-222ENST00000555774 SERPINI2O75830 405 aa12.27□□□□□ -0.45
SHMT2-222ENST00000555774 UTS2O95399 124 aa12.27□□□□□ -0.45
SHMT2-222ENST00000555774 CPN1P15169 458 aa12.27□□□□□ -0.45
SHMT2-222ENST00000555774 GRPRP30550 384 aa12.27□□□□□ -0.45
SHMT2-222ENST00000555774 MECP2P51608 486 aaKnown RBP12.27□□□□□ -0.45
SHMT2-222ENST00000555774 DNM1P46Q6ZS02 220 aa12.27□□□□□ -0.45
SHMT2-222ENST00000555774 LRRTM1Q86UE6 522 aa12.27□□□□□ -0.45
SHMT2-222ENST00000555774 DND1Q8IYX4 353 aaKnown RBP12.27□□□□□ -0.45
SHMT2-222ENST00000555774 SDR16C5Q8N3Y7 309 aa12.27□□□□□ -0.45
SHMT2-222ENST00000555774 BMPERQ8N8U9 685 aa12.27□□□□□ -0.45
SHMT2-222ENST00000555774 C1orf216Q8TAB5 229 aa12.27□□□□□ -0.45
SHMT2-222ENST00000555774 ZNF417Q8TAU3 575 aa12.27□□□□□ -0.45
SHMT2-222ENST00000555774 CITED4Q96RK1 184 aa12.27□□□□□ -0.45
SHMT2-222ENST00000555774 LPAR4Q99677 370 aa12.27□□□□□ -0.45
SHMT2-222ENST00000555774 TSPAN10Q9H1Z9 355 aaPredicted RBP12.27□□□□□ -0.45
SHMT2-222ENST00000555774 FRRS1LQ9P0K9 344 aa12.27□□□□□ -0.45
SHMT2-222ENST00000555774 EPHA6Q9UF33 1036 aa12.27□□□□□ -0.45
SHMT2-222ENST00000555774 LAMP5Q9UJQ1 280 aa12.27□□□□□ -0.45
SHMT2-222ENST00000555774 KLHDC2Q9Y2U9 406 aa12.27□□□□□ -0.45
SHMT2-222ENST00000555774 ARHGEF17Q96PE2 2063 aaPredicted RBP12.26□□□□□ -0.45
SHMT2-222ENST00000555774 A0A1W2PPC4 97 aa12.26□□□□□ -0.45
SHMT2-222ENST00000555774 FAM171A2A8MVW0 826 aa12.26□□□□□ -0.45
SHMT2-222ENST00000555774 CHURC1-FNTBB4DL54 471 aa12.26□□□□□ -0.45
SHMT2-222ENST00000555774 OIP5O43482 229 aa12.26□□□□□ -0.45
SHMT2-222ENST00000555774 GMDSO60547 372 aa12.26□□□□□ -0.45
SHMT2-222ENST00000555774 IFNA7P01567 189 aa12.26□□□□□ -0.45
SHMT2-222ENST00000555774 HIST1H2ABP04908 130 aa12.26□□□□□ -0.45
SHMT2-222ENST00000555774 RORAP35398 523 aa12.26□□□□□ -0.45
SHMT2-222ENST00000555774 FNTBP49356 437 aa12.26□□□□□ -0.45
SHMT2-222ENST00000555774 P2RX1P51575 399 aa12.26□□□□□ -0.45
SHMT2-222ENST00000555774 CCR4P51679 360 aa12.26□□□□□ -0.45
SHMT2-222ENST00000555774 MAZP56270 477 aaKnown RBP12.26□□□□□ -0.45
SHMT2-222ENST00000555774 SLC37A1P57057 533 aa12.26□□□□□ -0.45
SHMT2-222ENST00000555774 EGR4Q05215 589 aa12.26□□□□□ -0.45
SHMT2-222ENST00000555774 RPL18Q07020 188 aaKnown RBP12.26□□□□□ -0.45
SHMT2-222ENST00000555774 DLX2Q07687 328 aaPredicted RBP12.26□□□□□ -0.45
SHMT2-222ENST00000555774 RASGEF1BQ0VAM2 473 aa12.26□□□□□ -0.45
SHMT2-222ENST00000555774 GRM7Q14831 915 aa12.26□□□□□ -0.45
SHMT2-222ENST00000555774 MESTQ5EB52 335 aa12.26□□□□□ -0.45
SHMT2-222ENST00000555774 EEF1A1P5Q5VTE0 462 aa12.26□□□□□ -0.45
SHMT2-222ENST00000555774 SFRP4Q6FHJ7 346 aaPredicted RBP12.26□□□□□ -0.45
SHMT2-222ENST00000555774 HIST3H2AQ7L7L0 130 aa12.26□□□□□ -0.45
SHMT2-222ENST00000555774 SPICQ8N5J4 248 aa12.26□□□□□ -0.45
SHMT2-222ENST00000555774 GATSQ8NAP1 163 aa12.26□□□□□ -0.45
SHMT2-222ENST00000555774 HIST1H2ACQ93077 130 aa12.26□□□□□ -0.45
SHMT2-222ENST00000555774 CCDC74AQ96AQ1 378 aa12.26□□□□□ -0.45
SHMT2-222ENST00000555774 TSPAN32Q96QS1 320 aa12.26□□□□□ -0.45
SHMT2-222ENST00000555774 ADAM19Q9H013 955 aa12.26□□□□□ -0.45
SHMT2-222ENST00000555774 CLEC4MQ9H2X3 399 aaPredicted RBP12.26□□□□□ -0.45
SHMT2-222ENST00000555774 TAS2R10Q9NYW0 307 aa12.26□□□□□ -0.45
SHMT2-222ENST00000555774 CYP8B1Q9UNU6 501 aa12.26□□□□□ -0.45
SHMT2-222ENST00000555774 SCN2AQ99250 2005 aa12.26□□□□□ -0.45
SHMT2-222ENST00000555774 LAMA3Q16787 3333 aa12.26□□□□□ -0.45
SHMT2-222ENST00000555774 OR4C45A6NMZ5 311 aa12.26□□□□□ -0.45
SHMT2-222ENST00000555774 LEUTXA8MZ59 168 aa12.26□□□□□ -0.45
SHMT2-222ENST00000555774 PSMD9O00233 223 aa12.26□□□□□ -0.45
SHMT2-222ENST00000555774 RPP14O95059 124 aaKnown RBP12.26□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 61 ms