RNA–Protein interactions for RNA: ENST00000553837.5

SHMT2-207, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 5

Gene SHMT2, Length 2,152 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-207ENST00000553837 MRPL48Q96GC5 212 aaKnown RBP11.21□□□□□ -0.61
SHMT2-207ENST00000553837 ZDHHC12Q96GR4 267 aa11.21□□□□□ -0.61
SHMT2-207ENST00000553837 CMTM3Q96MX0 182 aa11.21□□□□□ -0.61
SHMT2-207ENST00000553837 PDCD10Q9BUL8 212 aa11.21□□□□□ -0.61
SHMT2-207ENST00000553837 HCAR1Q9BXC0 346 aa11.21□□□□□ -0.61
SHMT2-207ENST00000553837 UBQLN3Q9H347 655 aa11.21□□□□□ -0.61
SHMT2-207ENST00000553837 LYRM4Q9HD34 91 aa11.21□□□□□ -0.61
SHMT2-207ENST00000553837 FAM60AQ9NP50 221 aa11.21□□□□□ -0.61
SHMT2-207ENST00000553837 HRASLS2Q9NWW9 162 aa11.21□□□□□ -0.61
SHMT2-207ENST00000553837 KNL1Q8NG31 2342 aa11.21□□□□□ -0.61
SHMT2-207ENST00000553837 BRWD1Q9NSI6 2320 aa11.21□□□□□ -0.61
SHMT2-207ENST00000553837 TRAV1-2A0A0B4J238 106 aa11.21□□□□□ -0.62
SHMT2-207ENST00000553837 LOC105378220A0A1B0GUY1 285 aaPredicted RBP11.21□□□□□ -0.62
SHMT2-207ENST00000553837 REM1O75628 298 aa11.21□□□□□ -0.62
SHMT2-207ENST00000553837 AGR2O95994 175 aa11.21□□□□□ -0.62
SHMT2-207ENST00000553837 THBS1P07996 1170 aa11.21□□□□□ -0.62
SHMT2-207ENST00000553837 TYRP1P17643 537 aa11.21□□□□□ -0.62
SHMT2-207ENST00000553837 TBXA2RP21731 343 aa11.21□□□□□ -0.62
SHMT2-207ENST00000553837 MAPK3P27361 379 aaPredicted RBP11.21□□□□□ -0.62
SHMT2-207ENST00000553837 DLX5P56178 289 aa11.21□□□□□ -0.62
SHMT2-207ENST00000553837 GMFBP60983 142 aa11.21□□□□□ -0.62
SHMT2-207ENST00000553837 MC2RQ01718 297 aa11.21□□□□□ -0.62
SHMT2-207ENST00000553837 SLC3A1Q07837 685 aa11.21□□□□□ -0.62
SHMT2-207ENST00000553837 OR1Q1Q15612 314 aa11.21□□□□□ -0.62
SHMT2-207ENST00000553837 DEFB110Q30KQ9 67 aa11.21□□□□□ -0.62
SHMT2-207ENST00000553837 ACSM3Q53FZ2 586 aa11.21□□□□□ -0.62
SHMT2-207ENST00000553837 EEF1A1P5Q5VTE0 462 aa11.21□□□□□ -0.62
SHMT2-207ENST00000553837 ZNF626Q68DY1 528 aa11.21□□□□□ -0.62
SHMT2-207ENST00000553837 ZNF660Q6AZW8 331 aaPredicted RBP11.21□□□□□ -0.62
SHMT2-207ENST00000553837 ELP2Q6IA86 826 aa11.21□□□□□ -0.62
SHMT2-207ENST00000553837 MTFR2Q6P444 385 aa11.21□□□□□ -0.62
SHMT2-207ENST00000553837 RNF44Q7L0R7 432 aa11.21□□□□□ -0.62
SHMT2-207ENST00000553837 EID2Q8N6I1 236 aa11.21□□□□□ -0.62
SHMT2-207ENST00000553837 GPBAR1Q8TDU6 330 aa11.21□□□□□ -0.62
SHMT2-207ENST00000553837 HMGB4Q8WW32 186 aa11.21□□□□□ -0.62
SHMT2-207ENST00000553837 TIMP4Q99727 224 aa11.21□□□□□ -0.62
SHMT2-207ENST00000553837 NDC1Q9BTX1 674 aa11.21□□□□□ -0.62
SHMT2-207ENST00000553837 MRPL15Q9P015 296 aaKnown RBP11.21□□□□□ -0.62
SHMT2-207ENST00000553837 MSRAQ9UJ68 235 aa11.21□□□□□ -0.62
SHMT2-207ENST00000553837 CDHR4A6H8M9 788 aa11.2□□□□□ -0.62
SHMT2-207ENST00000553837 DBX1A6NMT0 343 aa11.2□□□□□ -0.62
SHMT2-207ENST00000553837 SC5DO75845 299 aa11.2□□□□□ -0.62
SHMT2-207ENST00000553837 SIX6O95475 246 aa11.2□□□□□ -0.62
SHMT2-207ENST00000553837 GPR75O95800 540 aa11.2□□□□□ -0.62
SHMT2-207ENST00000553837 EPXP11678 715 aa11.2□□□□□ -0.62
SHMT2-207ENST00000553837 GCGRP47871 477 aa11.2□□□□□ -0.62
SHMT2-207ENST00000553837 ERVK-25P63136 954 aa11.2□□□□□ -0.62
SHMT2-207ENST00000553837 E2F1Q01094 437 aa11.2□□□□□ -0.62
SHMT2-207ENST00000553837 ILF3Q12906 894 aaKnown RBP eCLIP11.2□□□□□ -0.62
SHMT2-207ENST00000553837 ANKRD39Q53RE8 183 aa11.2□□□□□ -0.62
SHMT2-207ENST00000553837 OR7E24Q6IFN5 339 aa11.2□□□□□ -0.62
SHMT2-207ENST00000553837 APOOLQ6UXV4 268 aa11.2□□□□□ -0.62
SHMT2-207ENST00000553837 THSD4Q6ZMP0 1018 aa11.2□□□□□ -0.62
SHMT2-207ENST00000553837 RHOUQ7L0Q8 258 aa11.2□□□□□ -0.62
SHMT2-207ENST00000553837 OR2T33Q8NG76 320 aa11.2□□□□□ -0.62
SHMT2-207ENST00000553837 THEM6Q8WUY1 208 aa11.2□□□□□ -0.62
SHMT2-207ENST00000553837 RERGQ96A58 199 aaPredicted RBP11.2□□□□□ -0.62
SHMT2-207ENST00000553837 ZNF285Q96NJ3 590 aa11.2□□□□□ -0.62
SHMT2-207ENST00000553837 OR52D1Q9H346 318 aa11.2□□□□□ -0.62
SHMT2-207ENST00000553837 AUNIPQ9H7T9 357 aa11.2□□□□□ -0.62
SHMT2-207ENST00000553837 INPP5EQ9NRR6 644 aa11.2□□□□□ -0.62
SHMT2-207ENST00000553837 CLDND1Q9NY35 253 aa11.2□□□□□ -0.62
SHMT2-207ENST00000553837 CD207Q9UJ71 328 aa11.2□□□□□ -0.62
SHMT2-207ENST00000553837 TNRC18O15417 2968 aaPredicted RBP11.2□□□□□ -0.62
SHMT2-207ENST00000553837 TRAPPC13A5PLN9 417 aa11.2□□□□□ -0.62
SHMT2-207ENST00000553837 URADA6NGE7 173 aa11.2□□□□□ -0.62
SHMT2-207ENST00000553837 UNC119BA6NIH7 251 aa11.2□□□□□ -0.62
SHMT2-207ENST00000553837 C2orf74A8MZ97 194 aa11.2□□□□□ -0.62
SHMT2-207ENST00000553837 ZNF749O43361 778 aa11.2□□□□□ -0.62
SHMT2-207ENST00000553837 PRAMEF2O60811 474 aa11.2□□□□□ -0.62
SHMT2-207ENST00000553837 CDC123O75794 336 aaPredicted RBP11.2□□□□□ -0.62
SHMT2-207ENST00000553837 SEMA4FO95754 770 aa11.2□□□□□ -0.62
SHMT2-207ENST00000553837 NID1P14543 1247 aa11.2□□□□□ -0.62
SHMT2-207ENST00000553837 ATF1P18846 271 aa11.2□□□□□ -0.62
SHMT2-207ENST00000553837 DRD1P21728 446 aa11.2□□□□□ -0.62
SHMT2-207ENST00000553837 AKT2P31751 481 aa11.2□□□□□ -0.62
SHMT2-207ENST00000553837 GABRA3P34903 492 aa11.2□□□□□ -0.62
SHMT2-207ENST00000553837 YPEL5P62699 121 aa11.2□□□□□ -0.62
SHMT2-207ENST00000553837 MRPS21P82921 87 aaKnown RBP11.2□□□□□ -0.62
SHMT2-207ENST00000553837 C1orf61Q13536 156 aa11.2□□□□□ -0.62
SHMT2-207ENST00000553837 CCDC157Q569K6 752 aa11.2□□□□□ -0.62
SHMT2-207ENST00000553837 TEX30Q5JUR7 227 aa11.2□□□□□ -0.62
SHMT2-207ENST00000553837 UBE2NLQ5JXB2 153 aa11.2□□□□□ -0.62
SHMT2-207ENST00000553837 PLBD1Q6P4A8 553 aa11.2□□□□□ -0.62
SHMT2-207ENST00000553837 ESPNLQ6ZVH7 1005 aa11.2□□□□□ -0.62
SHMT2-207ENST00000553837 MEPCEQ7L2J0 689 aaKnown RBP11.2□□□□□ -0.62
SHMT2-207ENST00000553837 LINGO2Q7L985 606 aa11.2□□□□□ -0.62
SHMT2-207ENST00000553837 CSNK1A1LQ8N752 337 aa11.2□□□□□ -0.62
SHMT2-207ENST00000553837 COX18Q8N8Q8 333 aa11.2□□□□□ -0.62
SHMT2-207ENST00000553837 OR4D9Q8NGE8 314 aa11.2□□□□□ -0.62
SHMT2-207ENST00000553837 OR6K3Q8NGY3 331 aa11.2□□□□□ -0.62
SHMT2-207ENST00000553837 NANPQ8TBE9 248 aa11.2□□□□□ -0.62
SHMT2-207ENST00000553837 SFT2D1Q8WV19 159 aa11.2□□□□□ -0.62
SHMT2-207ENST00000553837 RSC1A1Q92681 617 aa11.2□□□□□ -0.62
SHMT2-207ENST00000553837 CTHRC1Q96CG8 243 aa11.2□□□□□ -0.62
SHMT2-207ENST00000553837 ORAI1Q96D31 301 aa11.2□□□□□ -0.62
SHMT2-207ENST00000553837 UTP23Q9BRU9 249 aaKnown RBP11.2□□□□□ -0.62
SHMT2-207ENST00000553837 PTDSS2Q9BVG9 487 aa11.2□□□□□ -0.62
SHMT2-207ENST00000553837 CAPN10Q9HC96 672 aa11.2□□□□□ -0.62
SHMT2-207ENST00000553837 EXOSC3Q9NQT5 275 aaKnown RBP11.2□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 64.4 ms