RNA–Protein interactions for RNA: ENST00000552909.5

LIMA1-216, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 2,162 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-216ENST00000552909 LGALS3BPQ08380 585 aa7□□□□□ -1.29
LIMA1-216ENST00000552909 ACSM2AQ08AH3 577 aa7□□□□□ -1.29
LIMA1-216ENST00000552909 ERV3-1Q14264 604 aa7□□□□□ -1.29
LIMA1-216ENST00000552909 GINS1Q14691 196 aa7□□□□□ -1.29
LIMA1-216ENST00000552909 MINDY4Q4G0A6 757 aa7□□□□□ -1.29
LIMA1-216ENST00000552909 ACSM2BQ68CK6 577 aa7□□□□□ -1.29
LIMA1-216ENST00000552909 RHBDD2Q6NTF9 364 aa7□□□□□ -1.29
LIMA1-216ENST00000552909 FIP1L1Q6UN15 594 aaKnown RBP7□□□□□ -1.29
LIMA1-216ENST00000552909 GSG1LQ6UXU4 331 aa7□□□□□ -1.29
LIMA1-216ENST00000552909 Q6ZTK2 550 aa7□□□□□ -1.29
LIMA1-216ENST00000552909 TTLL10Q6ZVT0 673 aa7□□□□□ -1.29
LIMA1-216ENST00000552909 RNF44Q7L0R7 432 aa7□□□□□ -1.29
LIMA1-216ENST00000552909 LHFPL3Q86UP9 236 aa7□□□□□ -1.29
LIMA1-216ENST00000552909 NR2C2APQ86WQ0 139 aa7□□□□□ -1.29
LIMA1-216ENST00000552909 SHISA5Q8N114 240 aa7□□□□□ -1.29
LIMA1-216ENST00000552909 SPICQ8N5J4 248 aa7□□□□□ -1.29
LIMA1-216ENST00000552909 ZNF485Q8NCK3 441 aa7□□□□□ -1.29
LIMA1-216ENST00000552909 PXT1Q8NFP0 134 aa7□□□□□ -1.29
LIMA1-216ENST00000552909 OR5M9Q8NGP3 310 aa7□□□□□ -1.29
LIMA1-216ENST00000552909 SFT2D1Q8WV19 159 aa7□□□□□ -1.29
LIMA1-216ENST00000552909 ZDHHC19Q8WVZ1 309 aaPredicted RBP7□□□□□ -1.29
LIMA1-216ENST00000552909 EXTL1Q92935 676 aa7□□□□□ -1.29
LIMA1-216ENST00000552909 ARL5BQ96KC2 179 aa7□□□□□ -1.29
LIMA1-216ENST00000552909 ZNF285Q96NJ3 590 aa7□□□□□ -1.29
LIMA1-216ENST00000552909 OR2A5Q96R48 311 aa7□□□□□ -1.29
LIMA1-216ENST00000552909 DMRTA2Q96SC8 542 aa7□□□□□ -1.29
LIMA1-216ENST00000552909 ZFYVE21Q9BQ24 234 aa7□□□□□ -1.29
LIMA1-216ENST00000552909 MACROD1Q9BQ69 325 aa7□□□□□ -1.29
LIMA1-216ENST00000552909 ZNF251Q9BRH9 671 aa7□□□□□ -1.29
LIMA1-216ENST00000552909 SLC35A5Q9BS91 424 aa7□□□□□ -1.29
LIMA1-216ENST00000552909 IFT27Q9BW83 186 aa7□□□□□ -1.29
LIMA1-216ENST00000552909 DMRT3Q9NQL9 472 aa7□□□□□ -1.29
LIMA1-216ENST00000552909 NPDC1Q9NQX5 325 aaPredicted RBP7□□□□□ -1.29
LIMA1-216ENST00000552909 GSN-AS1Q9NRJ2 163 aa7□□□□□ -1.29
LIMA1-216ENST00000552909 SLC22A11Q9NSA0 550 aa7□□□□□ -1.29
LIMA1-216ENST00000552909 TEX10Q9NXF1 929 aaPredicted RBP7□□□□□ -1.29
LIMA1-216ENST00000552909 PIPOXQ9P0Z9 390 aa7□□□□□ -1.29
LIMA1-216ENST00000552909 PTGFRNQ9P2B2 879 aa7□□□□□ -1.29
LIMA1-216ENST00000552909 RASD1Q9Y272 281 aa7□□□□□ -1.29
LIMA1-216ENST00000552909 A0A1B0GUH1 482 aa6.99□□□□□ -1.29
LIMA1-216ENST00000552909 LRRN3E7EW58 273 aa6.99□□□□□ -1.29
LIMA1-216ENST00000552909 H0YGG7 62 aa6.99□□□□□ -1.29
LIMA1-216ENST00000552909 RNASET2O00584 256 aaKnown RBP6.99□□□□□ -1.29
LIMA1-216ENST00000552909 GALR3O60755 368 aaPredicted RBP6.99□□□□□ -1.29
LIMA1-216ENST00000552909 UBL3O95164 117 aa6.99□□□□□ -1.29
LIMA1-216ENST00000552909 RECKO95980 971 aa6.99□□□□□ -1.29
LIMA1-216ENST00000552909 GBAP04062 536 aa6.99□□□□□ -1.29
LIMA1-216ENST00000552909 S100A9P06702 114 aaKnown RBP6.99□□□□□ -1.29
LIMA1-216ENST00000552909 KLK3P07288 261 aaPredicted RBP6.99□□□□□ -1.29
LIMA1-216ENST00000552909 H1F0P07305 194 aaKnown RBP6.99□□□□□ -1.29
LIMA1-216ENST00000552909 SMIM6P0DI80 62 aa6.99□□□□□ -1.29
LIMA1-216ENST00000552909 OR12D1P0DN82 309 aa6.99□□□□□ -1.29
LIMA1-216ENST00000552909 RFC3P40938 356 aa6.99□□□□□ -1.29
LIMA1-216ENST00000552909 MMP15P51511 669 aa6.99□□□□□ -1.29
LIMA1-216ENST00000552909 PCBP3P57721 371 aaKnown RBP6.99□□□□□ -1.29
LIMA1-216ENST00000552909 ARF3P61204 181 aaPredicted RBP6.99□□□□□ -1.29
LIMA1-216ENST00000552909 DGCR2P98153 550 aa6.99□□□□□ -1.29
LIMA1-216ENST00000552909 REEP5Q00765 189 aa6.99□□□□□ -1.29
LIMA1-216ENST00000552909 EEF1A2Q05639 463 aaKnown RBP6.99□□□□□ -1.29
LIMA1-216ENST00000552909 ACSM1Q08AH1 577 aa6.99□□□□□ -1.29
LIMA1-216ENST00000552909 DYRK1AQ13627 763 aa6.99□□□□□ -1.29
LIMA1-216ENST00000552909 CAMKMTQ7Z624 323 aa6.99□□□□□ -1.29
LIMA1-216ENST00000552909 KLHL36Q8N4N3 616 aa6.99□□□□□ -1.29
LIMA1-216ENST00000552909 C12orf45Q8N5I9 185 aaPredicted RBP6.99□□□□□ -1.29
LIMA1-216ENST00000552909 METTL27Q8N6F8 245 aaPredicted RBP6.99□□□□□ -1.29
LIMA1-216ENST00000552909 FAM71CQ8NEG0 241 aa6.99□□□□□ -1.29
LIMA1-216ENST00000552909 TRMT10AQ8TBZ6 339 aaKnown RBP6.99□□□□□ -1.29
LIMA1-216ENST00000552909 LRFN5Q96NI6 719 aa6.99□□□□□ -1.29
LIMA1-216ENST00000552909 ZFP3Q96NJ6 502 aa6.99□□□□□ -1.29
LIMA1-216ENST00000552909 F2RL3Q96RI0 385 aa6.99□□□□□ -1.29
LIMA1-216ENST00000552909 FAIM2Q9BWQ8 316 aa6.99□□□□□ -1.29
LIMA1-216ENST00000552909 BCL2L14Q9BZR8 327 aa6.99□□□□□ -1.29
LIMA1-216ENST00000552909 TINAGL1Q9GZM7 467 aaPredicted RBP6.99□□□□□ -1.29
LIMA1-216ENST00000552909 ARL6Q9H0F7 186 aa6.99□□□□□ -1.29
LIMA1-216ENST00000552909 RHBGQ9H310 441 aa6.99□□□□□ -1.29
LIMA1-216ENST00000552909 MRTO4Q9UKD2 239 aaKnown RBP6.99□□□□□ -1.29
LIMA1-216ENST00000552909 MAP4K5Q9Y4K4 846 aa6.99□□□□□ -1.29
LIMA1-216ENST00000552909 FASNP49327 2511 aaKnown RBP6.99□□□□□ -1.29
LIMA1-216ENST00000552909 NUP214P35658 2090 aaPredicted RBP6.99□□□□□ -1.29
LIMA1-216ENST00000552909 HMSDA8MTL9 139 aa6.99□□□□□ -1.29
LIMA1-216ENST00000552909 P2RX6O15547 441 aa6.99□□□□□ -1.29
LIMA1-216ENST00000552909 SRPX2O60687 465 aaPredicted RBP6.99□□□□□ -1.29
LIMA1-216ENST00000552909 PRAMEF2O60811 474 aa6.99□□□□□ -1.29
LIMA1-216ENST00000552909 NME6O75414 186 aaPredicted RBP6.99□□□□□ -1.29
LIMA1-216ENST00000552909 ITGA10O75578 1167 aa6.99□□□□□ -1.29
LIMA1-216ENST00000552909 EIF3GO75821 320 aaKnown RBP eCLIP6.99□□□□□ -1.29
LIMA1-216ENST00000552909 GATBO75879 557 aaKnown RBP6.99□□□□□ -1.29
LIMA1-216ENST00000552909 HIST1H2ABP04908 130 aa6.99□□□□□ -1.29
LIMA1-216ENST00000552909 ACAA1P09110 424 aaPredicted RBP6.99□□□□□ -1.29
LIMA1-216ENST00000552909 ANXA4P09525 319 aaPredicted RBP6.99□□□□□ -1.29
LIMA1-216ENST00000552909 CPN1P15169 458 aa6.99□□□□□ -1.29
LIMA1-216ENST00000552909 THBS2P35442 1172 aa6.99□□□□□ -1.29
LIMA1-216ENST00000552909 CD96P40200 585 aa6.99□□□□□ -1.29
LIMA1-216ENST00000552909 OR1D4P47884 311 aa6.99□□□□□ -1.29
LIMA1-216ENST00000552909 GIPRP48546 466 aa6.99□□□□□ -1.29
LIMA1-216ENST00000552909 VEGFCP49767 419 aa6.99□□□□□ -1.29
LIMA1-216ENST00000552909 ARHGDIBP52566 201 aa6.99□□□□□ -1.29
LIMA1-216ENST00000552909 PSMA6P60900 246 aaKnown RBP6.99□□□□□ -1.29
LIMA1-216ENST00000552909 SSTP61278 116 aa6.99□□□□□ -1.29
LIMA1-216ENST00000552909 HBA1P69905 142 aa6.99□□□□□ -1.29
Retrieved 100 of 20,778 RNA–protein pairs in 41.8 ms