RNA–Protein interactions for RNA: ENST00000550008.6

CUX1-214, Transcript of cut like homeobox 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CUX1, Length 4,350 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-214ENST00000550008 LTBQ06643 244 aa13.74□□□□□ -0.21
CUX1-214ENST00000550008 ABHD17BQ5VST6 288 aa13.74□□□□□ -0.21
CUX1-214ENST00000550008 SLC22A10Q63ZE4 541 aa13.74□□□□□ -0.21
CUX1-214ENST00000550008 NKX3-1Q99801 234 aaPredicted RBP13.74□□□□□ -0.21
CUX1-214ENST00000550008 OR51J1Q9H342 316 aa13.74□□□□□ -0.21
CUX1-214ENST00000550008 ZNF160Q9HCG1 818 aa13.74□□□□□ -0.21
CUX1-214ENST00000550008 SERTM1A2A2V5 107 aa13.74□□□□□ -0.21
CUX1-214ENST00000550008 OR14I1A6ND48 311 aa13.74□□□□□ -0.21
CUX1-214ENST00000550008 HRKO00198 91 aa13.74□□□□□ -0.21
CUX1-214ENST00000550008 SFTPBP07988 381 aa13.74□□□□□ -0.21
CUX1-214ENST00000550008 PCMT1P22061 227 aa13.74□□□□□ -0.21
CUX1-214ENST00000550008 COL28A1Q2UY09 1125 aa13.74□□□□□ -0.21
CUX1-214ENST00000550008 AGAP7PQ5VUJ5 663 aa13.74□□□□□ -0.21
CUX1-214ENST00000550008 APOOLQ6UXV4 268 aa13.74□□□□□ -0.21
CUX1-214ENST00000550008 THSD4Q6ZMP0 1018 aa13.74□□□□□ -0.21
CUX1-214ENST00000550008 NOXA1Q86UR1 476 aa13.74□□□□□ -0.21
CUX1-214ENST00000550008 THAP6Q8TBB0 222 aa13.74□□□□□ -0.21
CUX1-214ENST00000550008 GABRG3Q99928 467 aa13.74□□□□□ -0.21
CUX1-214ENST00000550008 PARPBPQ9NWS1 579 aa13.74□□□□□ -0.21
CUX1-214ENST00000550008 POLHQ9Y253 713 aa13.74□□□□□ -0.21
CUX1-214ENST00000550008 MMACHCQ9Y4U1 282 aa13.74□□□□□ -0.21
CUX1-214ENST00000550008 NPFFR2Q9Y5X5 522 aa13.74□□□□□ -0.21
CUX1-214ENST00000550008 TRAV36DV7A0A075B6V5 113 aa13.74□□□□□ -0.21
CUX1-214ENST00000550008 IGKV1-8A0A0C4DH67 115 aa13.74□□□□□ -0.21
CUX1-214ENST00000550008 CRTAPO75718 401 aaPredicted RBP13.74□□□□□ -0.21
CUX1-214ENST00000550008 RAB3DO95716 219 aa13.74□□□□□ -0.21
CUX1-214ENST00000550008 SPI1P17947 270 aa13.74□□□□□ -0.21
CUX1-214ENST00000550008 POLR2HP52434 150 aaKnown RBP13.74□□□□□ -0.21
CUX1-214ENST00000550008 ATAD3CQ5T2N8 411 aa13.74□□□□□ -0.21
CUX1-214ENST00000550008 YOD1Q5VVQ6 348 aaPredicted RBP13.74□□□□□ -0.21
CUX1-214ENST00000550008 C1orf140Q5VVS0 124 aa13.74□□□□□ -0.21
CUX1-214ENST00000550008 LRRC69Q6ZNQ3 347 aa13.74□□□□□ -0.21
CUX1-214ENST00000550008 ZAR1Q86SH2 424 aa13.74□□□□□ -0.21
CUX1-214ENST00000550008 OR2L13Q8N349 312 aa13.74□□□□□ -0.21
CUX1-214ENST00000550008 TSPAN10Q9H1Z9 355 aaPredicted RBP13.74□□□□□ -0.21
CUX1-214ENST00000550008 FSCN3Q9NQT6 498 aa13.74□□□□□ -0.21
CUX1-214ENST00000550008 ALG5Q9Y673 324 aa13.74□□□□□ -0.21
CUX1-214ENST00000550008 A0A1W2PNR3 127 aa13.74□□□□□ -0.21
CUX1-214ENST00000550008 LMO7DNF2Z398 122 aa13.74□□□□□ -0.21
CUX1-214ENST00000550008 ALOX12BO75342 701 aa13.74□□□□□ -0.21
CUX1-214ENST00000550008 GATBO75879 557 aaKnown RBP13.74□□□□□ -0.21
CUX1-214ENST00000550008 ELK1P19419 428 aa13.74□□□□□ -0.21
CUX1-214ENST00000550008 AMY2BP19961 511 aa13.74□□□□□ -0.21
CUX1-214ENST00000550008 ERP29P30040 261 aaKnown RBP13.74□□□□□ -0.21
CUX1-214ENST00000550008 GPR85P60893 370 aa13.74□□□□□ -0.21
CUX1-214ENST00000550008 SMAD4Q13485 552 aaKnown RBP13.74□□□□□ -0.21
CUX1-214ENST00000550008 PDSS1Q5T2R2 415 aa13.74□□□□□ -0.21
CUX1-214ENST00000550008 CFAP77Q6ZQR2 320 aa13.74□□□□□ -0.21
CUX1-214ENST00000550008 LANCL3Q6ZV70 420 aa13.74□□□□□ -0.21
CUX1-214ENST00000550008 COX15Q7KZN9 410 aa13.74□□□□□ -0.21
CUX1-214ENST00000550008 CRIPAKQ8N1N5 446 aa13.74□□□□□ -0.21
CUX1-214ENST00000550008 GCDHQ92947 438 aaPredicted RBP13.74□□□□□ -0.21
CUX1-214ENST00000550008 COA3Q9Y2R0 106 aaPredicted RBP13.74□□□□□ -0.21
CUX1-214ENST00000550008 MED12Q93074 2177 aa13.73□□□□□ -0.21
CUX1-214ENST00000550008 NBASA2RRP1 2371 aa13.73□□□□□ -0.21
CUX1-214ENST00000550008 A0A087WV62 115 aa13.73□□□□□ -0.21
CUX1-214ENST00000550008 KANTRA0A1W2PQU2 76 aa13.73□□□□□ -0.21
CUX1-214ENST00000550008 RPL18Q07020 188 aaKnown RBP13.73□□□□□ -0.21
CUX1-214ENST00000550008 GALEQ14376 348 aa13.73□□□□□ -0.21
CUX1-214ENST00000550008 BAK1Q16611 211 aa13.73□□□□□ -0.21
CUX1-214ENST00000550008 KIAA1143Q96AT1 154 aaPredicted RBP13.73□□□□□ -0.21
CUX1-214ENST00000550008 NAA11Q9BSU3 229 aaPredicted RBP13.73□□□□□ -0.21
CUX1-214ENST00000550008 ZNF350Q9GZX5 532 aa13.73□□□□□ -0.21
CUX1-214ENST00000550008 AKIP1Q9NQ31 210 aa13.73□□□□□ -0.21
CUX1-214ENST00000550008 PCDHGB2Q9Y5G2 931 aa13.73□□□□□ -0.21
CUX1-214ENST00000550008 ARPC5O15511 151 aa13.73□□□□□ -0.21
CUX1-214ENST00000550008 GPRIN2O60269 458 aa13.73□□□□□ -0.21
CUX1-214ENST00000550008 SYNGR4O95473 234 aa13.73□□□□□ -0.21
CUX1-214ENST00000550008 IGHA2P01877 340 aa13.73□□□□□ -0.21
CUX1-214ENST00000550008 PEBP1P30086 187 aaKnown RBP13.73□□□□□ -0.21
CUX1-214ENST00000550008 GDNFP39905 211 aa13.73□□□□□ -0.21
CUX1-214ENST00000550008 LSSP48449 732 aa13.73□□□□□ -0.21
CUX1-214ENST00000550008 CSNK1A1P48729 337 aa13.73□□□□□ -0.21
CUX1-214ENST00000550008 SYT13Q7L8C5 426 aa13.73□□□□□ -0.21
CUX1-214ENST00000550008 GLCCI1Q86VQ1 547 aa13.73□□□□□ -0.21
CUX1-214ENST00000550008 NT5CQ8TCD5 201 aa13.73□□□□□ -0.21
CUX1-214ENST00000550008 ELP5Q8TE02 316 aa13.73□□□□□ -0.21
CUX1-214ENST00000550008 SLC41A2Q96JW4 573 aa13.73□□□□□ -0.21
CUX1-214ENST00000550008 FYTTD1Q96QD9 318 aaKnown RBP13.73□□□□□ -0.21
CUX1-214ENST00000550008 WFDC6Q9BQY6 131 aa13.73□□□□□ -0.21
CUX1-214ENST00000550008 URM1Q9BTM9 101 aaKnown RBP13.73□□□□□ -0.21
CUX1-214ENST00000550008 FBXO8Q9NRD0 319 aa13.73□□□□□ -0.21
CUX1-214ENST00000550008 MED29Q9NX70 200 aa13.73□□□□□ -0.21
CUX1-214ENST00000550008 PDCD11Q14690 1871 aaKnown RBP13.73□□□□□ -0.21
CUX1-214ENST00000550008 A6NIZ1 184 aa13.73□□□□□ -0.21
CUX1-214ENST00000550008 IFNGR1P15260 489 aa13.73□□□□□ -0.21
CUX1-214ENST00000550008 ZNF28P17035 718 aa13.73□□□□□ -0.21
CUX1-214ENST00000550008 S100GP29377 79 aa13.73□□□□□ -0.21
CUX1-214ENST00000550008 HMGA2P52926 109 aa13.73□□□□□ -0.21
CUX1-214ENST00000550008 RAP1BP61224 184 aa13.73□□□□□ -0.21
CUX1-214ENST00000550008 RAP1AP62834 184 aa13.73□□□□□ -0.21
CUX1-214ENST00000550008 SSX1Q16384 188 aa13.73□□□□□ -0.21
CUX1-214ENST00000550008 FAM69AQ5T7M9 428 aa13.73□□□□□ -0.21
CUX1-214ENST00000550008 TCEAL6Q6IPX3 200 aa13.73□□□□□ -0.21
CUX1-214ENST00000550008 KIAA0907Q7Z7F0 614 aaPredicted RBP13.73□□□□□ -0.21
CUX1-214ENST00000550008 NRIP3Q9NQ35 241 aa13.73□□□□□ -0.21
CUX1-214ENST00000550008 RBFOX1Q9NWB1 397 aaKnown RBP13.73□□□□□ -0.21
CUX1-214ENST00000550008 CENPVL1A0A0U1RR11 272 aa13.72□□□□□ -0.21
CUX1-214ENST00000550008 CENPBD1B2RD01 187 aa13.72□□□□□ -0.21
CUX1-214ENST00000550008 CPEP16870 476 aa13.72□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 22.7 ms